RNA–Protein interactions for RNA: ENST00000491967.1

SMARCB1-207, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 605 nt, Biotype processed transcript, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-207ENST00000491967 SCAPERQ9BY12 1400 aa13.72□□□□□ -0.21
SMARCB1-207ENST00000491967 ATP1B4Q9UN42 357 aaPredicted RBP13.71□□□□□ -0.21
SMARCB1-207ENST00000491967 CCDC18Q5T9S5 1454 aa13.71□□□□□ -0.21
SMARCB1-207ENST00000491967 YEATS2Q9ULM3 1422 aa13.7□□□□□ -0.22
SMARCB1-207ENST00000491967 PCF11O94913 1555 aaKnown RBP13.7□□□□□ -0.22
SMARCB1-207ENST00000491967 SIGLEC1Q9BZZ2 1709 aa13.7□□□□□ -0.22
SMARCB1-207ENST00000491967 ZFYVE16Q7Z3T8 1539 aa13.69□□□□□ -0.22
SMARCB1-207ENST00000491967 CLIP1P30622 1438 aa13.69□□□□□ -0.22
SMARCB1-207ENST00000491967 CDC42BPBQ9Y5S2 1711 aa13.69□□□□□ -0.22
SMARCB1-207ENST00000491967 FYCO1Q9BQS8 1478 aa13.68□□□□□ -0.22
SMARCB1-207ENST00000491967 MADDQ8WXG6 1647 aa13.67□□□□□ -0.22
SMARCB1-207ENST00000491967 KDM5CP41229 1560 aa13.66□□□□□ -0.22
SMARCB1-207ENST00000491967 ATP10AO60312 1499 aa13.66□□□□□ -0.22
SMARCB1-207ENST00000491967 ZNF518AQ6AHZ1 1483 aa13.65□□□□□ -0.22
SMARCB1-207ENST00000491967 ARID4BQ4LE39 1312 aaPredicted RBP13.64□□□□□ -0.23
SMARCB1-207ENST00000491967 PREX2Q70Z35 1606 aa13.64□□□□□ -0.23
SMARCB1-207ENST00000491967 ARHGAP5Q13017 1502 aa13.64□□□□□ -0.23
SMARCB1-207ENST00000491967 AFAP1Q8N556 730 aa13.63□□□□□ -0.23
SMARCB1-207ENST00000491967 MLH3Q9UHC1 1453 aa13.62□□□□□ -0.23
SMARCB1-207ENST00000491967 CDC42BPAQ5VT25 1732 aa13.62□□□□□ -0.23
SMARCB1-207ENST00000491967 ARHGEF12Q9NZN5 1544 aa13.62□□□□□ -0.23
SMARCB1-207ENST00000491967 C9orf84Q5VXU9 1444 aa13.62□□□□□ -0.23
SMARCB1-207ENST00000491967 ABCC1P33527 1531 aa13.61□□□□□ -0.23
SMARCB1-207ENST00000491967 RIMS1Q86UR5 1692 aaKnown RBP13.61□□□□□ -0.23
SMARCB1-207ENST00000491967 REREQ9P2R6 1566 aa13.61□□□□□ -0.23
SMARCB1-207ENST00000491967 LMTK3Q96Q04 1460 aa13.6□□□□□ -0.23
SMARCB1-207ENST00000491967 TRAPPC8Q9Y2L5 1435 aa13.59□□□□□ -0.23
SMARCB1-207ENST00000491967 GPATCH8Q9UKJ3 1502 aaKnown RBP13.59□□□□□ -0.23
SMARCB1-207ENST00000491967 ITSN2Q9NZM3 1697 aa13.58□□□□□ -0.24
SMARCB1-207ENST00000491967 DIP2CQ9Y2E4 1556 aa13.58□□□□□ -0.24
SMARCB1-207ENST00000491967 FER1L4A9Z1Z3 1794 aa13.57□□□□□ -0.24
SMARCB1-207ENST00000491967 AGLP35573 1532 aa13.56□□□□□ -0.24
SMARCB1-207ENST00000491967 KIAA1107Q9UPP5 1409 aa13.56□□□□□ -0.24
SMARCB1-207ENST00000491967 KIDINS220Q9ULH0 1771 aa13.55□□□□□ -0.24
SMARCB1-207ENST00000491967 ABCA6Q8N139 1617 aa13.55□□□□□ -0.24
SMARCB1-207ENST00000491967 SAMD9LQ8IVG5 1584 aa13.54□□□□□ -0.24
SMARCB1-207ENST00000491967 SETD1BQ9UPS6 1966 aaKnown RBP13.54□□□□□ -0.24
SMARCB1-207ENST00000491967 CEP162Q5TB80 1403 aa13.54□□□□□ -0.24
SMARCB1-207ENST00000491967 PLEKHH2Q8IVE3 1493 aa13.51□□□□□ -0.25
SMARCB1-207ENST00000491967 MLECQ14165 292 aa13.51□□□□□ -0.25
SMARCB1-207ENST00000491967 SYCP2Q9BX26 1530 aa13.49□□□□□ -0.25
SMARCB1-207ENST00000491967 MTUS2Q5JR59 1369 aa13.49□□□□□ -0.25
SMARCB1-207ENST00000491967 CCNB3Q8WWL7 1395 aa13.49□□□□□ -0.25
SMARCB1-207ENST00000491967 CFDP1Q9UEE9 299 aaPredicted RBP13.49□□□□□ -0.25
SMARCB1-207ENST00000491967 EHBP1L1Q8N3D4 1523 aa13.49□□□□□ -0.25
SMARCB1-207ENST00000491967 HNRNPMP52272 730 aaKnown RBP eCLIP13.48□□□□□ -0.25
SMARCB1-207ENST00000491967 TIAM1Q13009 1591 aa13.48□□□□□ -0.25
SMARCB1-207ENST00000491967 INO80Q9ULG1 1556 aaPredicted RBP13.47□□□□□ -0.25
SMARCB1-207ENST00000491967 FBXO41Q8TF61 875 aa13.47□□□□□ -0.25
SMARCB1-207ENST00000491967 MBD5Q9P267 1494 aa13.47□□□□□ -0.25
SMARCB1-207ENST00000491967 PREX1Q8TCU6 1659 aa13.47□□□□□ -0.25
SMARCB1-207ENST00000491967 SPAG9O60271 1321 aaKnown RBP13.46□□□□□ -0.25
SMARCB1-207ENST00000491967 ZNF777Q9ULD5 760 aaPredicted RBP13.46□□□□□ -0.25
SMARCB1-207ENST00000491967 PLXNC1O60486 1568 aa13.45□□□□□ -0.26
SMARCB1-207ENST00000491967 CEBPAP49715 358 aaPredicted RBP13.45□□□□□ -0.26
SMARCB1-207ENST00000491967 HSPA2P54652 639 aa13.45□□□□□ -0.26
SMARCB1-207ENST00000491967 ATP7AQ04656 1500 aa13.44□□□□□ -0.26
SMARCB1-207ENST00000491967 C3P01024 1663 aa13.44□□□□□ -0.26
SMARCB1-207ENST00000491967 MYT1LQ9UL68 1186 aa13.44□□□□□ -0.26
SMARCB1-207ENST00000491967 CNTLNQ9NXG0 1405 aa13.44□□□□□ -0.26
SMARCB1-207ENST00000491967 ZNF644Q9H582 1327 aaPredicted RBP13.43□□□□□ -0.26
SMARCB1-207ENST00000491967 LOC105371045A0A1W2PR82 267 aa13.43□□□□□ -0.26
SMARCB1-207ENST00000491967 RTEL1-TNFRSF6BF6WH68 1400 aa13.43□□□□□ -0.26
SMARCB1-207ENST00000491967 NCOA2Q15596 1464 aa13.42□□□□□ -0.26
SMARCB1-207ENST00000491967 MROH2AA6NES4 1674 aa13.41□□□□□ -0.26
SMARCB1-207ENST00000491967 VPS8Q8N3P4 1428 aa13.41□□□□□ -0.26
SMARCB1-207ENST00000491967 MAP3K1Q13233 1512 aa13.41□□□□□ -0.26
SMARCB1-207ENST00000491967 SUPT6HQ7KZ85 1726 aaKnown RBP13.41□□□□□ -0.26
SMARCB1-207ENST00000491967 A2MP01023 1474 aa13.41□□□□□ -0.26
SMARCB1-207ENST00000491967 STRCQ7RTU9 1775 aa13.4□□□□□ -0.26
SMARCB1-207ENST00000491967 PPP6R1Q9UPN7 881 aa13.4□□□□□ -0.26
SMARCB1-207ENST00000491967 ADGBQ8N7X0 1667 aa13.4□□□□□ -0.26
SMARCB1-207ENST00000491967 NPATQ14207 1427 aa13.39□□□□□ -0.27
SMARCB1-207ENST00000491967 RSPH4AQ5TD94 716 aa13.39□□□□□ -0.27
SMARCB1-207ENST00000491967 PLPPR3Q6T4P5 718 aa13.39□□□□□ -0.27
SMARCB1-207ENST00000491967 LRRC9Q6ZRR7 1453 aa13.38□□□□□ -0.27
SMARCB1-207ENST00000491967 ZMYM3Q14202 1370 aa13.38□□□□□ -0.27
SMARCB1-207ENST00000491967 UHRF1BP1Q6BDS2 1440 aa13.38□□□□□ -0.27
SMARCB1-207ENST00000491967 ESF1Q9H501 851 aaKnown RBP13.36□□□□□ -0.27
SMARCB1-207ENST00000491967 DHX29Q7Z478 1369 aaKnown RBP13.35□□□□□ -0.27
SMARCB1-207ENST00000491967 ARHGEF5Q12774 1597 aa13.35□□□□□ -0.27
SMARCB1-207ENST00000491967 CAMSAP2Q08AD1 1489 aa13.35□□□□□ -0.27
SMARCB1-207ENST00000491967 CCDC141Q6ZP82 1450 aa13.35□□□□□ -0.27
SMARCB1-207ENST00000491967 DMRT2Q9Y5R5 561 aa13.34□□□□□ -0.27
SMARCB1-207ENST00000491967 PTPRKQ15262 1439 aa13.33□□□□□ -0.28
SMARCB1-207ENST00000491967 KANK4Q5T7N3 995 aaPredicted RBP13.33□□□□□ -0.28
SMARCB1-207ENST00000491967 CLTCQ00610 1675 aaKnown RBP13.33□□□□□ -0.28
SMARCB1-207ENST00000491967 PTPRTO14522 1441 aa13.32□□□□□ -0.28
SMARCB1-207ENST00000491967 NCOA1Q15788 1441 aa13.3□□□□□ -0.28
SMARCB1-207ENST00000491967 MIA2Q96PC5 1412 aa13.3□□□□□ -0.28
SMARCB1-207ENST00000491967 FAM135AQ9P2D6 1515 aa13.3□□□□□ -0.28
SMARCB1-207ENST00000491967 GGT6Q6P531 493 aa13.3□□□□□ -0.28
SMARCB1-207ENST00000491967 CERKQ8TCT0 537 aa13.3□□□□□ -0.28
SMARCB1-207ENST00000491967 MAST1Q9Y2H9 1570 aa13.29□□□□□ -0.28
SMARCB1-207ENST00000491967 ZNF142P52746 1687 aaPredicted RBP13.28□□□□□ -0.28
SMARCB1-207ENST00000491967 MYOM3Q5VTT5 1437 aa13.28□□□□□ -0.28
SMARCB1-207ENST00000491967 KIF3BO15066 747 aa13.26□□□□□ -0.29
SMARCB1-207ENST00000491967 TSPY4P0CV99 314 aa13.26□□□□□ -0.29
SMARCB1-207ENST00000491967 TSPY10P0CW01 314 aa13.26□□□□□ -0.29
SMARCB1-207ENST00000491967 CAMSAP1Q5T5Y3 1602 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 98.1 ms