RNA–Protein interactions for RNA: ENST00000491581.5

HDAC3-211, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 777 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-211ENST00000491581 CDC42BPBQ9Y5S2 1711 aa14.66□□□□□ -0.06
HDAC3-211ENST00000491581 PLPPR3Q6T4P5 718 aa14.65□□□□□ -0.06
HDAC3-211ENST00000491581 PLCH2O75038 1416 aa14.64□□□□□ -0.07
HDAC3-211ENST00000491581 ARID4BQ4LE39 1312 aaPredicted RBP14.64□□□□□ -0.07
HDAC3-211ENST00000491581 PTPRMP28827 1452 aa14.63□□□□□ -0.07
HDAC3-211ENST00000491581 PHLDB1Q86UU1 1377 aa14.63□□□□□ -0.07
HDAC3-211ENST00000491581 SCAPERQ9BY12 1400 aa14.63□□□□□ -0.07
HDAC3-211ENST00000491581 ZMYM4Q5VZL5 1548 aa14.62□□□□□ -0.07
HDAC3-211ENST00000491581 ZFYVE16Q7Z3T8 1539 aa14.62□□□□□ -0.07
HDAC3-211ENST00000491581 TROQ12816 1431 aaPredicted RBP14.62□□□□□ -0.07
HDAC3-211ENST00000491581 ARHGAP5Q13017 1502 aa14.61□□□□□ -0.07
HDAC3-211ENST00000491581 CDC42BPAQ5VT25 1732 aa14.61□□□□□ -0.07
HDAC3-211ENST00000491581 POGZQ7Z3K3 1410 aa14.6□□□□□ -0.07
HDAC3-211ENST00000491581 MLECQ14165 292 aa14.6□□□□□ -0.07
HDAC3-211ENST00000491581 PREX2Q70Z35 1606 aa14.59□□□□□ -0.07
HDAC3-211ENST00000491581 CLIP1P30622 1438 aa14.58□□□□□ -0.07
HDAC3-211ENST00000491581 CASKIN1Q8WXD9 1431 aa14.58□□□□□ -0.07
HDAC3-211ENST00000491581 ARHGEF12Q9NZN5 1544 aa14.57□□□□□ -0.08
HDAC3-211ENST00000491581 AFAP1Q8N556 730 aa14.57□□□□□ -0.08
HDAC3-211ENST00000491581 FER1L4A9Z1Z3 1794 aa14.57□□□□□ -0.08
HDAC3-211ENST00000491581 ITSN2Q9NZM3 1697 aa14.55□□□□□ -0.08
HDAC3-211ENST00000491581 ABCA6Q8N139 1617 aa14.55□□□□□ -0.08
HDAC3-211ENST00000491581 EFCAB2Q5VUJ9 269 aa14.54□□□□□ -0.08
HDAC3-211ENST00000491581 FYCO1Q9BQS8 1478 aa14.53□□□□□ -0.08
HDAC3-211ENST00000491581 TRAPPC8Q9Y2L5 1435 aa14.53□□□□□ -0.08
HDAC3-211ENST00000491581 ILDR1Q86SU0 546 aaPredicted RBP14.53□□□□□ -0.08
HDAC3-211ENST00000491581 CDK11AQ9UQ88 783 aaPredicted RBP14.53□□□□□ -0.08
HDAC3-211ENST00000491581 KDM5CP41229 1560 aa14.52□□□□□ -0.08
HDAC3-211ENST00000491581 DIP2CQ9Y2E4 1556 aa14.52□□□□□ -0.08
HDAC3-211ENST00000491581 ABCC1P33527 1531 aa14.52□□□□□ -0.08
HDAC3-211ENST00000491581 CCDC18Q5T9S5 1454 aa14.52□□□□□ -0.08
HDAC3-211ENST00000491581 SAMD9LQ8IVG5 1584 aa14.51□□□□□ -0.09
HDAC3-211ENST00000491581 LMTK3Q96Q04 1460 aa14.51□□□□□ -0.09
HDAC3-211ENST00000491581 HSPA2P54652 639 aa14.5□□□□□ -0.09
HDAC3-211ENST00000491581 ATP10AO60312 1499 aa14.5□□□□□ -0.09
HDAC3-211ENST00000491581 LOC105371045A0A1W2PR82 267 aa14.49□□□□□ -0.09
HDAC3-211ENST00000491581 CEBPAP49715 358 aaPredicted RBP14.49□□□□□ -0.09
HDAC3-211ENST00000491581 KIDINS220Q9ULH0 1771 aa14.49□□□□□ -0.09
HDAC3-211ENST00000491581 MAGI2Q86UL8 1455 aa14.49□□□□□ -0.09
HDAC3-211ENST00000491581 MYT1LQ9UL68 1186 aa14.48□□□□□ -0.09
HDAC3-211ENST00000491581 ZNF777Q9ULD5 760 aaPredicted RBP14.48□□□□□ -0.09
HDAC3-211ENST00000491581 ZNF518AQ6AHZ1 1483 aa14.48□□□□□ -0.09
HDAC3-211ENST00000491581 C9orf84Q5VXU9 1444 aa14.48□□□□□ -0.09
HDAC3-211ENST00000491581 SYCP2Q9BX26 1530 aa14.47□□□□□ -0.09
HDAC3-211ENST00000491581 GPATCH8Q9UKJ3 1502 aaKnown RBP14.46□□□□□ -0.09
HDAC3-211ENST00000491581 CEP162Q5TB80 1403 aa14.46□□□□□ -0.09
HDAC3-211ENST00000491581 HNRNPMP52272 730 aaKnown RBP eCLIP14.44□□□□□ -0.1
HDAC3-211ENST00000491581 PIAS4Q8N2W9 510 aaPredicted RBP14.44□□□□□ -0.1
HDAC3-211ENST00000491581 SUPT6HQ7KZ85 1726 aaKnown RBP14.43□□□□□ -0.1
HDAC3-211ENST00000491581 TIAM1Q13009 1591 aa14.43□□□□□ -0.1
HDAC3-211ENST00000491581 C3P01024 1663 aa14.42□□□□□ -0.1
HDAC3-211ENST00000491581 ZNF644Q9H582 1327 aaPredicted RBP14.42□□□□□ -0.1
HDAC3-211ENST00000491581 MLH3Q9UHC1 1453 aa14.41□□□□□ -0.1
HDAC3-211ENST00000491581 PREX1Q8TCU6 1659 aa14.39□□□□□ -0.11
HDAC3-211ENST00000491581 MTUS2Q5JR59 1369 aa14.38□□□□□ -0.11
HDAC3-211ENST00000491581 REREQ9P2R6 1566 aa14.38□□□□□ -0.11
HDAC3-211ENST00000491581 INO80Q9ULG1 1556 aaPredicted RBP14.38□□□□□ -0.11
HDAC3-211ENST00000491581 EHBP1L1Q8N3D4 1523 aa14.36□□□□□ -0.11
HDAC3-211ENST00000491581 CCNB3Q8WWL7 1395 aa14.36□□□□□ -0.11
HDAC3-211ENST00000491581 ATP7AQ04656 1500 aa14.36□□□□□ -0.11
HDAC3-211ENST00000491581 STRCQ7RTU9 1775 aa14.35□□□□□ -0.11
HDAC3-211ENST00000491581 CFDP1Q9UEE9 299 aaPredicted RBP14.35□□□□□ -0.11
HDAC3-211ENST00000491581 CLTCQ00610 1675 aaKnown RBP14.34□□□□□ -0.11
HDAC3-211ENST00000491581 AGLP35573 1532 aa14.33□□□□□ -0.12
HDAC3-211ENST00000491581 ADGBQ8N7X0 1667 aa14.33□□□□□ -0.12
HDAC3-211ENST00000491581 SPAG9O60271 1321 aaKnown RBP14.32□□□□□ -0.12
HDAC3-211ENST00000491581 NCOA2Q15596 1464 aa14.31□□□□□ -0.12
HDAC3-211ENST00000491581 PLXNC1O60486 1568 aa14.31□□□□□ -0.12
HDAC3-211ENST00000491581 MBD5Q9P267 1494 aa14.31□□□□□ -0.12
HDAC3-211ENST00000491581 KANK4Q5T7N3 995 aaPredicted RBP14.29□□□□□ -0.12
HDAC3-211ENST00000491581 A2MP01023 1474 aa14.28□□□□□ -0.12
HDAC3-211ENST00000491581 CAMSAP2Q08AD1 1489 aa14.28□□□□□ -0.12
HDAC3-211ENST00000491581 KIAA1107Q9UPP5 1409 aa14.27□□□□□ -0.12
HDAC3-211ENST00000491581 VPS8Q8N3P4 1428 aa14.26□□□□□ -0.13
HDAC3-211ENST00000491581 GGT6Q6P531 493 aa14.25□□□□□ -0.13
HDAC3-211ENST00000491581 MROH2AA6NES4 1674 aa14.25□□□□□ -0.13
HDAC3-211ENST00000491581 LRRC9Q6ZRR7 1453 aa14.25□□□□□ -0.13
HDAC3-211ENST00000491581 PLEKHH2Q8IVE3 1493 aa14.25□□□□□ -0.13
HDAC3-211ENST00000491581 UHRF1BP1Q6BDS2 1440 aa14.24□□□□□ -0.13
HDAC3-211ENST00000491581 ESF1Q9H501 851 aaKnown RBP14.22□□□□□ -0.13
HDAC3-211ENST00000491581 MYO3AQ8NEV4 1616 aa14.22□□□□□ -0.13
HDAC3-211ENST00000491581 ZMYM3Q14202 1370 aa14.22□□□□□ -0.13
HDAC3-211ENST00000491581 FBXO41Q8TF61 875 aa14.21□□□□□ -0.13
HDAC3-211ENST00000491581 SETD1BQ9UPS6 1966 aaKnown RBP14.2□□□□□ -0.14
HDAC3-211ENST00000491581 CCDC141Q6ZP82 1450 aa14.2□□□□□ -0.14
HDAC3-211ENST00000491581 CAMSAP1Q5T5Y3 1602 aa14.19□□□□□ -0.14
HDAC3-211ENST00000491581 PTPRKQ15262 1439 aa14.17□□□□□ -0.14
HDAC3-211ENST00000491581 CNTLNQ9NXG0 1405 aa14.17□□□□□ -0.14
HDAC3-211ENST00000491581 CERKQ8TCT0 537 aa14.17□□□□□ -0.14
HDAC3-211ENST00000491581 PPP6R1Q9UPN7 881 aa14.17□□□□□ -0.14
HDAC3-211ENST00000491581 ARHGEF5Q12774 1597 aa14.17□□□□□ -0.14
HDAC3-211ENST00000491581 NCKAP5LQ9HCH0 1330 aa14.16□□□□□ -0.14
HDAC3-211ENST00000491581 KIF3BO15066 747 aa14.16□□□□□ -0.14
HDAC3-211ENST00000491581 FBXO31Q5XUX0 539 aaPredicted RBP14.16□□□□□ -0.14
HDAC3-211ENST00000491581 ZNF142P52746 1687 aaPredicted RBP14.16□□□□□ -0.14
HDAC3-211ENST00000491581 CEP170BQ9Y4F5 1589 aaPredicted RBP14.15□□□□□ -0.14
HDAC3-211ENST00000491581 DHX29Q7Z478 1369 aaKnown RBP14.15□□□□□ -0.14
HDAC3-211ENST00000491581 RTEL1-TNFRSF6BF6WH68 1400 aa14.15□□□□□ -0.14
HDAC3-211ENST00000491581 NCOA1Q15788 1441 aa14.15□□□□□ -0.14
HDAC3-211ENST00000491581 CEP152O94986 1710 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms