RNA–Protein interactions for RNA: ENST00000490663.1

C4A-256, Transcript of complement C4A (Rodgers blood group), human

TSL 2

Gene C4A, Length 524 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
C4A-256	ENST00000490663	ITSN2	Q9NZM3	1697 aa		29.49	■■■□□ 2.31
C4A-256	ENST00000490663	ADGRL1	O94910	1474 aa		29.44	■■■□□ 2.3
C4A-256	ENST00000490663	RAPGEF3	O95398	923 aa		29.42	■■■□□ 2.3
C4A-256	ENST00000490663	SAMD9L	Q8IVG5	1584 aa		29.42	■■■□□ 2.3
C4A-256	ENST00000490663	PHLDB1	Q86UU1	1377 aa		29.4	■■■□□ 2.3
C4A-256	ENST00000490663	DENND4B	O75064	1496 aa	Predicted RBP	29.4	■■■□□ 2.3
C4A-256	ENST00000490663	LRRC9	Q6ZRR7	1453 aa		29.39	■■■□□ 2.3
C4A-256	ENST00000490663	ABCC1	P33527	1531 aa		29.39	■■■□□ 2.3
C4A-256	ENST00000490663	GPATCH8	Q9UKJ3	1502 aa	Known RBP	29.39	■■■□□ 2.3
C4A-256	ENST00000490663	MAP3K1	Q13233	1512 aa		29.37	■■■□□ 2.29
C4A-256	ENST00000490663	NCOA2	Q15596	1464 aa		29.36	■■■□□ 2.29
C4A-256	ENST00000490663	SCAPER	Q9BY12	1400 aa		29.36	■■■□□ 2.29
C4A-256	ENST00000490663	EFCAB2	Q5VUJ9	269 aa		29.35	■■■□□ 2.29
C4A-256	ENST00000490663	KANK4	Q5T7N3	995 aa	Predicted RBP	29.33	■■■□□ 2.29
C4A-256	ENST00000490663	CCNB3	Q8WWL7	1395 aa		29.33	■■■□□ 2.29
C4A-256	ENST00000490663	ZMYM4	Q5VZL5	1548 aa		29.33	■■■□□ 2.29
C4A-256	ENST00000490663	ARHGEF40	Q8TER5	1519 aa		29.32	■■■□□ 2.28
C4A-256	ENST00000490663	POGZ	Q7Z3K3	1410 aa		29.32	■■■□□ 2.28
C4A-256	ENST00000490663	SIGLEC1	Q9BZZ2	1709 aa		29.31	■■■□□ 2.28
C4A-256	ENST00000490663	ARHGEF12	Q9NZN5	1544 aa		29.31	■■■□□ 2.28
C4A-256	ENST00000490663	SYCP2	Q9BX26	1530 aa		29.3	■■■□□ 2.28
C4A-256	ENST00000490663	ZNF777	Q9ULD5	760 aa	Predicted RBP	29.28	■■■□□ 2.28
C4A-256	ENST00000490663	KDM5C	P41229	1560 aa		29.26	■■■□□ 2.27
C4A-256	ENST00000490663	ZFYVE16	Q7Z3T8	1539 aa		29.25	■■■□□ 2.27
C4A-256	ENST00000490663	HECW2	Q9P2P5	1572 aa		29.25	■■■□□ 2.27
C4A-256	ENST00000490663	YEATS2	Q9ULM3	1422 aa		29.22	■■■□□ 2.27
C4A-256	ENST00000490663	TRAPPC8	Q9Y2L5	1435 aa		29.22	■■■□□ 2.27
C4A-256	ENST00000490663	KIDINS220	Q9ULH0	1771 aa		29.21	■■■□□ 2.27
C4A-256	ENST00000490663	ABCA6	Q8N139	1617 aa		29.21	■■■□□ 2.27
C4A-256	ENST00000490663	APLP2	Q06481	763 aa		29.21	■■■□□ 2.27
C4A-256	ENST00000490663	ZNF518A	Q6AHZ1	1483 aa		29.21	■■■□□ 2.27
C4A-256	ENST00000490663	CFDP1	Q9UEE9	299 aa	Predicted RBP	29.2	■■■□□ 2.26
C4A-256	ENST00000490663	ZNF644	Q9H582	1327 aa	Predicted RBP	29.17	■■■□□ 2.26
C4A-256	ENST00000490663	AFAP1	Q8N556	730 aa		29.16	■■■□□ 2.26
C4A-256	ENST00000490663	DIP2C	Q9Y2E4	1556 aa		29.16	■■■□□ 2.26
C4A-256	ENST00000490663	CAMSAP2	Q08AD1	1489 aa		29.16	■■■□□ 2.26
C4A-256	ENST00000490663	BCORL1	Q5H9F3	1711 aa		29.14	■■■□□ 2.26
C4A-256	ENST00000490663	HNRNPM	P52272	730 aa	Known RBP eCLIP	29.12	■■■□□ 2.25
C4A-256	ENST00000490663	INO80	Q9ULG1	1556 aa	Predicted RBP	29.11	■■■□□ 2.25
C4A-256	ENST00000490663	MAGI2	Q86UL8	1455 aa		29.1	■■■□□ 2.25
C4A-256	ENST00000490663	PLEKHH2	Q8IVE3	1493 aa		29.1	■■■□□ 2.25
C4A-256	ENST00000490663	KDM4F	A0A1W2PPD8	638 aa		29.09	■■■□□ 2.25
C4A-256	ENST00000490663	MYOM3	Q5VTT5	1437 aa		29.08	■■■□□ 2.25
C4A-256	ENST00000490663	ADGB	Q8N7X0	1667 aa		29.07	■■■□□ 2.24
C4A-256	ENST00000490663	PTPN23	Q9H3S7	1636 aa		29.07	■■■□□ 2.24
C4A-256	ENST00000490663	MYT1L	Q9UL68	1186 aa		29.07	■■■□□ 2.24
C4A-256	ENST00000490663	ADAMTSL3	P82987	1691 aa		29.06	■■■□□ 2.24
C4A-256	ENST00000490663	ATP7A	Q04656	1500 aa		29.05	■■■□□ 2.24
C4A-256	ENST00000490663	KIAA1107	Q9UPP5	1409 aa		29.04	■■■□□ 2.24
C4A-256	ENST00000490663	FER1L4	A9Z1Z3	1794 aa		29.04	■■■□□ 2.24
C4A-256	ENST00000490663	MADD	Q8WXG6	1647 aa		29.04	■■■□□ 2.24
C4A-256	ENST00000490663	MLH3	Q9UHC1	1453 aa		29.04	■■■□□ 2.24
C4A-256	ENST00000490663	CROCC2	H7BZ55	1655 aa		29.03	■■■□□ 2.24
C4A-256	ENST00000490663	RIMS1	Q86UR5	1692 aa	Known RBP	29.03	■■■□□ 2.24
C4A-256	ENST00000490663	MBD5	Q9P267	1494 aa		29.03	■■■□□ 2.24
C4A-256	ENST00000490663	PPARGC1B	Q86YN6	1023 aa	Known RBP	29.02	■■■□□ 2.24
C4A-256	ENST00000490663	ATP10A	O60312	1499 aa		29.01	■■■□□ 2.23
C4A-256	ENST00000490663	ARHGEF5	Q12774	1597 aa		29.01	■■■□□ 2.23
C4A-256	ENST00000490663	ARID4B	Q4LE39	1312 aa	Predicted RBP	28.99	■■■□□ 2.23
C4A-256	ENST00000490663	C9orf84	Q5VXU9	1444 aa		28.99	■■■□□ 2.23
C4A-256	ENST00000490663	CCDC141	Q6ZP82	1450 aa		28.97	■■■□□ 2.23
C4A-256	ENST00000490663	AEBP2	Q6ZN18	517 aa	Predicted RBP	28.96	■■■□□ 2.23
C4A-256	ENST00000490663	RERE	Q9P2R6	1566 aa		28.95	■■■□□ 2.22
C4A-256	ENST00000490663	SPAG9	O60271	1321 aa	Known RBP	28.94	■■■□□ 2.22
C4A-256	ENST00000490663	MIA2	Q96PC5	1412 aa		28.94	■■■□□ 2.22
C4A-256	ENST00000490663	FGD6	Q6ZV73	1430 aa		28.93	■■■□□ 2.22
C4A-256	ENST00000490663	DNMT1	P26358	1616 aa	Known RBP	28.9	■■■□□ 2.22
C4A-256	ENST00000490663	MLEC	Q14165	292 aa		28.89	■■■□□ 2.22
C4A-256	ENST00000490663	PLXNC1	O60486	1568 aa		28.88	■■■□□ 2.21
C4A-256	ENST00000490663	MAST1	Q9Y2H9	1570 aa		28.87	■■■□□ 2.21
C4A-256	ENST00000490663	TCOF1	Q13428	1488 aa	Known RBP	28.85	■■■□□ 2.21
C4A-256	ENST00000490663	AGL	P35573	1532 aa		28.81	■■■□□ 2.2
C4A-256	ENST00000490663	A2M	P01023	1474 aa		28.81	■■■□□ 2.2
C4A-256	ENST00000490663	RTEL1-TNFRSF6B	F6WH68	1400 aa		28.78	■■■□□ 2.2
C4A-256	ENST00000490663	CLTC	Q00610	1675 aa	Known RBP	28.77	■■■□□ 2.2
C4A-256	ENST00000490663	PTPRM	P28827	1452 aa		28.77	■■■□□ 2.2
C4A-256	ENST00000490663	ABCC5	O15440	1437 aa		28.76	■■■□□ 2.19
C4A-256	ENST00000490663	DAPK1	P53355	1430 aa		28.76	■■■□□ 2.19
C4A-256	ENST00000490663	C3	P01024	1663 aa		28.75	■■■□□ 2.19
C4A-256	ENST00000490663	FAM50A	Q14320	339 aa	Known RBP	28.72	■■■□□ 2.19
C4A-256	ENST00000490663	PLPPR3	Q6T4P5	718 aa		28.72	■■■□□ 2.19
C4A-256	ENST00000490663	SHANK2	Q9UPX8	1470 aa		28.71	■■■□□ 2.19
C4A-256	ENST00000490663	TSPY4	P0CV99	314 aa		28.7	■■■□□ 2.18
C4A-256	ENST00000490663	TSPY10	P0CW01	314 aa		28.7	■■■□□ 2.18
C4A-256	ENST00000490663	RSPH4A	Q5TD94	716 aa		28.7	■■■□□ 2.18
C4A-256	ENST00000490663	MROH2A	A6NES4	1674 aa		28.66	■■■□□ 2.18
C4A-256	ENST00000490663	CEP152	O94986	1710 aa		28.65	■■■□□ 2.18
C4A-256	ENST00000490663	EIF2AK4	Q9P2K8	1649 aa	Known RBP	28.65	■■■□□ 2.18
C4A-256	ENST00000490663	CHIC2	Q9UKJ5	165 aa		28.63	■■■□□ 2.17
C4A-256	ENST00000490663	CFAP65	Q6ZU64	1925 aa	Known RBP	28.63	■■■□□ 2.17
C4A-256	ENST00000490663	DHX29	Q7Z478	1369 aa	Known RBP	28.62	■■■□□ 2.17
C4A-256	ENST00000490663	RNF17	Q9BXT8	1623 aa	Known RBP	28.62	■■■□□ 2.17
C4A-256	ENST00000490663	DUOX2	Q9NRD8	1548 aa		28.6	■■■□□ 2.17
C4A-256	ENST00000490663	MROH1	Q8NDA8	1641 aa		28.58	■■■□□ 2.17
C4A-256	ENST00000490663	GGT6	Q6P531	493 aa		28.57	■■■□□ 2.16
C4A-256	ENST00000490663	KIF15	Q9NS87	1388 aa		28.57	■■■□□ 2.16
C4A-256	ENST00000490663	PTPRK	Q15262	1439 aa		28.57	■■■□□ 2.16
C4A-256	ENST00000490663	PREX1	Q8TCU6	1659 aa		28.56	■■■□□ 2.16
C4A-256	ENST00000490663	KIF3B	O15066	747 aa		28.55	■■■□□ 2.16
C4A-256	ENST00000490663	CEBPA	P49715	358 aa	Predicted RBP	28.55	■■■□□ 2.16

Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms