RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 TMEM121BQ9BXQ6 578 aaPredicted RBP11.78□□□□□ -0.52
HMGB1P38-201ENST00000490557 NCKAP5LQ9HCH0 1330 aa11.76□□□□□ -0.53
HMGB1P38-201ENST00000490557 DDX27Q96GQ7 796 aaKnown RBP11.75□□□□□ -0.53
HMGB1P38-201ENST00000490557 CRISPLD2Q9H0B8 497 aa11.74□□□□□ -0.53
HMGB1P38-201ENST00000490557 P3H3Q8IVL6 736 aa11.73□□□□□ -0.53
HMGB1P38-201ENST00000490557 GPHNQ9NQX3 736 aaPredicted RBP11.73□□□□□ -0.53
HMGB1P38-201ENST00000490557 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.72□□□□□ -0.53
HMGB1P38-201ENST00000490557 MFSD10Q14728 455 aa11.68□□□□□ -0.54
HMGB1P38-201ENST00000490557 E2F4Q16254 413 aa11.68□□□□□ -0.54
HMGB1P38-201ENST00000490557 PPP1R15BQ5SWA1 713 aa11.68□□□□□ -0.54
HMGB1P38-201ENST00000490557 C2orf72A6NCS6 295 aa11.67□□□□□ -0.54
HMGB1P38-201ENST00000490557 BCANQ96GW7 911 aa11.67□□□□□ -0.54
HMGB1P38-201ENST00000490557 NBR1Q14596 966 aa11.65□□□□□ -0.54
HMGB1P38-201ENST00000490557 SCUBE2Q9NQ36 999 aa11.65□□□□□ -0.54
HMGB1P38-201ENST00000490557 DSG2Q14126 1118 aa11.64□□□□□ -0.55
HMGB1P38-201ENST00000490557 MAMSTRQ6ZN01 415 aa11.64□□□□□ -0.55
HMGB1P38-201ENST00000490557 FOXK1P85037 733 aa11.63□□□□□ -0.55
HMGB1P38-201ENST00000490557 KCNV2Q8TDN2 545 aa11.62□□□□□ -0.55
HMGB1P38-201ENST00000490557 KIF3CO14782 793 aa11.61□□□□□ -0.55
HMGB1P38-201ENST00000490557 TMEM92Q6UXU6 159 aa11.61□□□□□ -0.55
HMGB1P38-201ENST00000490557 PLPP6Q8IY26 295 aa11.61□□□□□ -0.55
HMGB1P38-201ENST00000490557 POTEB2H3BUK9 544 aa11.59□□□□□ -0.55
HMGB1P38-201ENST00000490557 ARHGEF1Q92888 912 aaKnown RBP11.57□□□□□ -0.56
HMGB1P38-201ENST00000490557 POTEJP0CG39 1038 aa11.56□□□□□ -0.56
HMGB1P38-201ENST00000490557 SLAIN1Q8ND83 568 aa11.56□□□□□ -0.56
HMGB1P38-201ENST00000490557 CAMK2BQ13554 666 aa11.55□□□□□ -0.56
HMGB1P38-201ENST00000490557 LHX8Q68G74 356 aa11.5□□□□□ -0.57
HMGB1P38-201ENST00000490557 UPF1Q92900 1129 aaKnown RBP eCLIP11.5□□□□□ -0.57
HMGB1P38-201ENST00000490557 MAP3K9P80192 1104 aa11.49□□□□□ -0.57
HMGB1P38-201ENST00000490557 EMILIN3Q9NT22 766 aa11.48□□□□□ -0.57
HMGB1P38-201ENST00000490557 DPYSL4O14531 572 aa11.47□□□□□ -0.57
HMGB1P38-201ENST00000490557 TBC1D12O60347 775 aa11.47□□□□□ -0.57
HMGB1P38-201ENST00000490557 ZNF316A6NFI3 1004 aaPredicted RBP11.46□□□□□ -0.57
HMGB1P38-201ENST00000490557 TULP1O00294 542 aaPredicted RBP11.46□□□□□ -0.57
HMGB1P38-201ENST00000490557 ARIH1Q9Y4X5 557 aaPredicted RBP11.46□□□□□ -0.57
HMGB1P38-201ENST00000490557 DOK7Q18PE1 504 aa11.44□□□□□ -0.58
HMGB1P38-201ENST00000490557 RIMBP2O15034 1052 aa11.43□□□□□ -0.58
HMGB1P38-201ENST00000490557 SPDYE16A6NNV3 312 aaPredicted RBP11.42□□□□□ -0.58
HMGB1P38-201ENST00000490557 SNPHO15079 494 aa11.42□□□□□ -0.58
HMGB1P38-201ENST00000490557 SLC34A2O95436 690 aa11.42□□□□□ -0.58
HMGB1P38-201ENST00000490557 OXER1Q8TDS5 423 aa11.42□□□□□ -0.58
HMGB1P38-201ENST00000490557 ZNF710Q8N1W2 664 aa11.41□□□□□ -0.58
HMGB1P38-201ENST00000490557 PTCD2Q8WV60 388 aaKnown RBP11.4□□□□□ -0.58
HMGB1P38-201ENST00000490557 OTUD5Q96G74 571 aa11.4□□□□□ -0.58
HMGB1P38-201ENST00000490557 SEMA3EO15041 775 aa11.39□□□□□ -0.59
HMGB1P38-201ENST00000490557 SMYD5Q6GMV2 418 aa11.39□□□□□ -0.59
HMGB1P38-201ENST00000490557 PDIA6Q15084 440 aa11.38□□□□□ -0.59
HMGB1P38-201ENST00000490557 PCDHGA4Q9Y5G9 962 aa11.37□□□□□ -0.59
HMGB1P38-201ENST00000490557 EVI5O60447 810 aa11.36□□□□□ -0.59
HMGB1P38-201ENST00000490557 TESPA1A2RU30 521 aaPredicted RBP11.33□□□□□ -0.6
HMGB1P38-201ENST00000490557 ZSWIM6Q9HCJ5 1215 aa11.33□□□□□ -0.6
HMGB1P38-201ENST00000490557 HOXB3P14651 431 aaPredicted RBP11.32□□□□□ -0.6
HMGB1P38-201ENST00000490557 GRXCR2A6NFK2 248 aa11.3□□□□□ -0.6
HMGB1P38-201ENST00000490557 ARSIQ5FYB1 569 aa11.3□□□□□ -0.6
HMGB1P38-201ENST00000490557 MLLT3P42568 568 aaPredicted RBP11.28□□□□□ -0.6
HMGB1P38-201ENST00000490557 NUDT7P0C024 238 aa11.27□□□□□ -0.61
HMGB1P38-201ENST00000490557 DDX12PQ92771 950 aa11.27□□□□□ -0.61
HMGB1P38-201ENST00000490557 LMOD2Q6P5Q4 547 aa11.26□□□□□ -0.61
HMGB1P38-201ENST00000490557 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.25□□□□□ -0.61
HMGB1P38-201ENST00000490557 GPR153Q6NV75 609 aa11.24□□□□□ -0.61
HMGB1P38-201ENST00000490557 KHSRPQ92945 711 aaKnown RBP eCLIP11.24□□□□□ -0.61
HMGB1P38-201ENST00000490557 ANO8Q9HCE9 1232 aaPredicted RBP11.24□□□□□ -0.61
HMGB1P38-201ENST00000490557 PTGER2P43116 358 aa11.23□□□□□ -0.61
HMGB1P38-201ENST00000490557 TPRNQ4KMQ1 711 aa11.22□□□□□ -0.61
HMGB1P38-201ENST00000490557 HOXB1P14653 301 aaPredicted RBP11.21□□□□□ -0.61
HMGB1P38-201ENST00000490557 PHF14O94880 888 aa11.19□□□□□ -0.62
HMGB1P38-201ENST00000490557 RBM26Q5T8P6 1007 aaKnown RBP11.19□□□□□ -0.62
HMGB1P38-201ENST00000490557 EPAS1Q99814 870 aa11.19□□□□□ -0.62
HMGB1P38-201ENST00000490557 ZNF454Q8N9F8 522 aa11.18□□□□□ -0.62
HMGB1P38-201ENST00000490557 FAM163AQ96GL9 167 aaPredicted RBP11.17□□□□□ -0.62
HMGB1P38-201ENST00000490557 JPH4Q96JJ6 628 aa11.17□□□□□ -0.62
HMGB1P38-201ENST00000490557 KDM4FA0A1W2PPD8 638 aa11.16□□□□□ -0.62
HMGB1P38-201ENST00000490557 PSDA5PKW4 1024 aaPredicted RBP11.16□□□□□ -0.62
HMGB1P38-201ENST00000490557 TYW1BQ6NUM6 668 aa11.16□□□□□ -0.62
HMGB1P38-201ENST00000490557 GPIHBP1Q8IV16 184 aa11.16□□□□□ -0.62
HMGB1P38-201ENST00000490557 LHX6Q9UPM6 363 aa11.16□□□□□ -0.62
HMGB1P38-201ENST00000490557 NUTM2FA1L443 756 aa11.15□□□□□ -0.62
HMGB1P38-201ENST00000490557 OSBPP22059 807 aa11.15□□□□□ -0.62
HMGB1P38-201ENST00000490557 FBXW7Q969H0 707 aa11.15□□□□□ -0.62
HMGB1P38-201ENST00000490557 MAP3K7O43318 606 aa11.14□□□□□ -0.63
HMGB1P38-201ENST00000490557 PPP4R3BQ5MIZ7 849 aa11.14□□□□□ -0.63
HMGB1P38-201ENST00000490557 RBM33Q96EV2 1170 aaKnown RBP11.14□□□□□ -0.63
HMGB1P38-201ENST00000490557 PCDHGA10Q9Y5H3 936 aa11.14□□□□□ -0.63
HMGB1P38-201ENST00000490557 ST18O60284 1047 aa11.13□□□□□ -0.63
HMGB1P38-201ENST00000490557 FOSBP53539 338 aa11.13□□□□□ -0.63
HMGB1P38-201ENST00000490557 EMP3P54852 163 aa11.12□□□□□ -0.63
HMGB1P38-201ENST00000490557 ZDHHC16Q969W1 377 aa11.12□□□□□ -0.63
HMGB1P38-201ENST00000490557 EN1Q05925 392 aaPredicted RBP11.11□□□□□ -0.63
HMGB1P38-201ENST00000490557 ERBB3P21860 1342 aa11.1□□□□□ -0.63
HMGB1P38-201ENST00000490557 PRKCSHP14314 528 aaPredicted RBP11.1□□□□□ -0.63
HMGB1P38-201ENST00000490557 ZC3H15Q8WU90 426 aaKnown RBP11.08□□□□□ -0.64
HMGB1P38-201ENST00000490557 MARVELD3Q96A59 401 aa11.08□□□□□ -0.64
HMGB1P38-201ENST00000490557 KCNH8Q96L42 1107 aa11.07□□□□□ -0.64
HMGB1P38-201ENST00000490557 FCHSD2O94868 740 aa11.06□□□□□ -0.64
HMGB1P38-201ENST00000490557 PRIM1P49642 420 aaKnown RBP11.05□□□□□ -0.64
HMGB1P38-201ENST00000490557 VARS2Q5ST30 1063 aaKnown RBP11.05□□□□□ -0.64
HMGB1P38-201ENST00000490557 TSR1Q2NL82 804 aaKnown RBP11.04□□□□□ -0.64
HMGB1P38-201ENST00000490557 ADAM33Q9BZ11 813 aa11.04□□□□□ -0.64
HMGB1P38-201ENST00000490557 C6orf132Q5T0Z8 1188 aa11.03□□□□□ -0.64
HMGB1P38-201ENST00000490557 FAM205CA6NFA0 338 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms