RNA–Protein interactions for RNA: ENST00000489868.5

CCDC39-206, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 534 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-206ENST00000489868 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.73□□□□□ -0.21
CCDC39-206ENST00000489868 MAMSTRQ6ZN01 415 aa13.72□□□□□ -0.21
CCDC39-206ENST00000489868 CRISPLD2Q9H0B8 497 aa13.72□□□□□ -0.21
CCDC39-206ENST00000489868 SCUBE2Q9NQ36 999 aa13.72□□□□□ -0.21
CCDC39-206ENST00000489868 KIF3CO14782 793 aa13.71□□□□□ -0.21
CCDC39-206ENST00000489868 C2orf72A6NCS6 295 aa13.69□□□□□ -0.22
CCDC39-206ENST00000489868 SLAIN1Q8ND83 568 aa13.67□□□□□ -0.22
CCDC39-206ENST00000489868 GPHNQ9NQX3 736 aaPredicted RBP13.66□□□□□ -0.22
CCDC39-206ENST00000489868 KDM2AQ9Y2K7 1162 aa13.65□□□□□ -0.22
CCDC39-206ENST00000489868 TMC2Q8TDI7 906 aa13.63□□□□□ -0.23
CCDC39-206ENST00000489868 LARP6Q9BRS8 491 aaKnown RBP13.63□□□□□ -0.23
CCDC39-206ENST00000489868 PDE4AP27815 886 aa13.62□□□□□ -0.23
CCDC39-206ENST00000489868 DSG2Q14126 1118 aa13.62□□□□□ -0.23
CCDC39-206ENST00000489868 MFSD10Q14728 455 aa13.61□□□□□ -0.23
CCDC39-206ENST00000489868 SLC24A1O60721 1099 aa13.58□□□□□ -0.24
CCDC39-206ENST00000489868 FOXK1P85037 733 aa13.58□□□□□ -0.24
CCDC39-206ENST00000489868 PPP1R15BQ5SWA1 713 aa13.56□□□□□ -0.24
CCDC39-206ENST00000489868 DDX27Q96GQ7 796 aaKnown RBP13.56□□□□□ -0.24
CCDC39-206ENST00000489868 PLPP6Q8IY26 295 aa13.54□□□□□ -0.24
CCDC39-206ENST00000489868 VSIG10Q8N0Z9 540 aa13.54□□□□□ -0.24
CCDC39-206ENST00000489868 HOXB3P14651 431 aaPredicted RBP13.51□□□□□ -0.25
CCDC39-206ENST00000489868 WDR70Q9NW82 654 aa13.46□□□□□ -0.25
CCDC39-206ENST00000489868 CAMK2BQ13554 666 aa13.45□□□□□ -0.26
CCDC39-206ENST00000489868 EMILIN3Q9NT22 766 aa13.45□□□□□ -0.26
CCDC39-206ENST00000489868 E2F4Q16254 413 aa13.41□□□□□ -0.26
CCDC39-206ENST00000489868 KCNV2Q8TDN2 545 aa13.41□□□□□ -0.26
CCDC39-206ENST00000489868 SLC34A2O95436 690 aa13.39□□□□□ -0.27
CCDC39-206ENST00000489868 DOK7Q18PE1 504 aa13.38□□□□□ -0.27
CCDC39-206ENST00000489868 OXER1Q8TDS5 423 aa13.38□□□□□ -0.27
CCDC39-206ENST00000489868 UPF1Q92900 1129 aaKnown RBP eCLIP13.38□□□□□ -0.27
CCDC39-206ENST00000489868 SNPHO15079 494 aa13.36□□□□□ -0.27
CCDC39-206ENST00000489868 LCE2DQ5TA82 110 aaPredicted RBP13.36□□□□□ -0.27
CCDC39-206ENST00000489868 PTCD2Q8WV60 388 aaKnown RBP13.36□□□□□ -0.27
CCDC39-206ENST00000489868 KHSRPQ92945 711 aaKnown RBP eCLIP13.34□□□□□ -0.27
CCDC39-206ENST00000489868 PCDHGA4Q9Y5G9 962 aa13.34□□□□□ -0.27
CCDC39-206ENST00000489868 GPR153Q6NV75 609 aa13.33□□□□□ -0.28
CCDC39-206ENST00000489868 ST18O60284 1047 aa13.32□□□□□ -0.28
CCDC39-206ENST00000489868 ARSIQ5FYB1 569 aa13.32□□□□□ -0.28
CCDC39-206ENST00000489868 DPYSL4O14531 572 aa13.31□□□□□ -0.28
CCDC39-206ENST00000489868 ZNF710Q8N1W2 664 aa13.3□□□□□ -0.28
CCDC39-206ENST00000489868 FAM163AQ96GL9 167 aaPredicted RBP13.3□□□□□ -0.28
CCDC39-206ENST00000489868 ARIH1Q9Y4X5 557 aaPredicted RBP13.29□□□□□ -0.28
CCDC39-206ENST00000489868 KDM4FA0A1W2PPD8 638 aa13.28□□□□□ -0.28
CCDC39-206ENST00000489868 ZSWIM6Q9HCJ5 1215 aa13.28□□□□□ -0.28
CCDC39-206ENST00000489868 RIMBP2O15034 1052 aa13.27□□□□□ -0.29
CCDC39-206ENST00000489868 P3H3Q8IVL6 736 aa13.27□□□□□ -0.29
CCDC39-206ENST00000489868 HOXB1P14653 301 aaPredicted RBP13.26□□□□□ -0.29
CCDC39-206ENST00000489868 MAP3K9P80192 1104 aa13.25□□□□□ -0.29
CCDC39-206ENST00000489868 ARHGEF1Q92888 912 aaKnown RBP13.25□□□□□ -0.29
CCDC39-206ENST00000489868 NUDT7P0C024 238 aa13.24□□□□□ -0.29
CCDC39-206ENST00000489868 TBC1D12O60347 775 aa13.21□□□□□ -0.29
CCDC39-206ENST00000489868 EVI5O60447 810 aa13.21□□□□□ -0.29
CCDC39-206ENST00000489868 PDIA6Q15084 440 aa13.21□□□□□ -0.29
CCDC39-206ENST00000489868 MARVELD3Q96A59 401 aa13.21□□□□□ -0.29
CCDC39-206ENST00000489868 ANO8Q9HCE9 1232 aaPredicted RBP13.18□□□□□ -0.3
CCDC39-206ENST00000489868 LHX6Q9UPM6 363 aa13.15□□□□□ -0.3
CCDC39-206ENST00000489868 SPDYE16A6NNV3 312 aaPredicted RBP13.13□□□□□ -0.31
CCDC39-206ENST00000489868 SEMA3EO15041 775 aa13.13□□□□□ -0.31
CCDC39-206ENST00000489868 EMP3P54852 163 aa13.12□□□□□ -0.31
CCDC39-206ENST00000489868 POTEB3A0JP26 581 aa13.11□□□□□ -0.31
CCDC39-206ENST00000489868 POTEBQ6S5H4 581 aa13.11□□□□□ -0.31
CCDC39-206ENST00000489868 ZNF316A6NFI3 1004 aaPredicted RBP13.1□□□□□ -0.31
CCDC39-206ENST00000489868 MLLT3P42568 568 aaPredicted RBP13.1□□□□□ -0.31
CCDC39-206ENST00000489868 PTGER2P43116 358 aa13.09□□□□□ -0.31
CCDC39-206ENST00000489868 DDX12PQ92771 950 aa13.08□□□□□ -0.32
CCDC39-206ENST00000489868 FAM205CA6NFA0 338 aa13.06□□□□□ -0.32
CCDC39-206ENST00000489868 VARS2Q5ST30 1063 aaKnown RBP13.06□□□□□ -0.32
CCDC39-206ENST00000489868 TESPA1A2RU30 521 aaPredicted RBP13.05□□□□□ -0.32
CCDC39-206ENST00000489868 FOSBP53539 338 aa13.05□□□□□ -0.32
CCDC39-206ENST00000489868 PCDHGA10Q9Y5H3 936 aa13.05□□□□□ -0.32
CCDC39-206ENST00000489868 ERBB3P21860 1342 aa13.05□□□□□ -0.32
CCDC39-206ENST00000489868 PRIM1P49642 420 aaKnown RBP13.03□□□□□ -0.32
CCDC39-206ENST00000489868 JPH4Q96JJ6 628 aa13.03□□□□□ -0.32
CCDC39-206ENST00000489868 HS3ST6Q96QI5 342 aa13.03□□□□□ -0.32
CCDC39-206ENST00000489868 GRXCR2A6NFK2 248 aa13.02□□□□□ -0.33
CCDC39-206ENST00000489868 ZNF454Q8N9F8 522 aa13.02□□□□□ -0.33
CCDC39-206ENST00000489868 POTEGQ6S5H5 508 aa13.01□□□□□ -0.33
CCDC39-206ENST00000489868 POTEMA6NI47 508 aa13□□□□□ -0.33
CCDC39-206ENST00000489868 PHF14O94880 888 aa13□□□□□ -0.33
CCDC39-206ENST00000489868 OSBPP22059 807 aa12.99□□□□□ -0.33
CCDC39-206ENST00000489868 NBR1Q14596 966 aa12.99□□□□□ -0.33
CCDC39-206ENST00000489868 POTEEQ6S8J3 1075 aa12.96□□□□□ -0.33
CCDC39-206ENST00000489868 ADAM33Q9BZ11 813 aa12.96□□□□□ -0.33
CCDC39-206ENST00000489868 PPP4R3BQ5MIZ7 849 aa12.95□□□□□ -0.34
CCDC39-206ENST00000489868 ZDHHC16Q969W1 377 aa12.95□□□□□ -0.34
CCDC39-206ENST00000489868 PSDA5PKW4 1024 aaPredicted RBP12.94□□□□□ -0.34
CCDC39-206ENST00000489868 TYW1BQ6NUM6 668 aa12.94□□□□□ -0.34
CCDC39-206ENST00000489868 EPAS1Q99814 870 aa12.94□□□□□ -0.34
CCDC39-206ENST00000489868 RBM33Q96EV2 1170 aaKnown RBP12.93□□□□□ -0.34
CCDC39-206ENST00000489868 EN1Q05925 392 aaPredicted RBP12.92□□□□□ -0.34
CCDC39-206ENST00000489868 ZNF687Q8N1G0 1237 aa12.92□□□□□ -0.34
CCDC39-206ENST00000489868 BCANQ96GW7 911 aa12.92□□□□□ -0.34
CCDC39-206ENST00000489868 RBM26Q5T8P6 1007 aaKnown RBP12.91□□□□□ -0.34
CCDC39-206ENST00000489868 FBXW7Q969H0 707 aa12.9□□□□□ -0.34
CCDC39-206ENST00000489868 BCL2L12Q9HB09 334 aa12.9□□□□□ -0.34
CCDC39-206ENST00000489868 TSR1Q2NL82 804 aaKnown RBP12.89□□□□□ -0.35
CCDC39-206ENST00000489868 AXIN2Q9Y2T1 843 aa12.89□□□□□ -0.35
CCDC39-206ENST00000489868 CDHR5Q9HBB8 845 aa12.87□□□□□ -0.35
CCDC39-206ENST00000489868 MAP3K7O43318 606 aa12.86□□□□□ -0.35
CCDC39-206ENST00000489868 PSEN2P49810 448 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms