RNA–Protein interactions for RNA: ENST00000489503.5

SMARCD3-213, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 3

Gene SMARCD3, Length 378 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-213ENST00000489503 RAPGEF3O95398 923 aa19.48■□□□□ 0.71
SMARCD3-213ENST00000489503 ADGRL1O94910 1474 aa19.48■□□□□ 0.71
SMARCD3-213ENST00000489503 DENND4BO75064 1496 aaPredicted RBP19.46■□□□□ 0.71
SMARCD3-213ENST00000489503 SCAPERQ9BY12 1400 aa19.43■□□□□ 0.7
SMARCD3-213ENST00000489503 GPATCH8Q9UKJ3 1502 aaKnown RBP19.43■□□□□ 0.7
SMARCD3-213ENST00000489503 EFCAB2Q5VUJ9 269 aa19.43■□□□□ 0.7
SMARCD3-213ENST00000489503 SUPT6HQ7KZ85 1726 aaKnown RBP19.42■□□□□ 0.7
SMARCD3-213ENST00000489503 POGZQ7Z3K3 1410 aa19.42■□□□□ 0.7
SMARCD3-213ENST00000489503 LRRC9Q6ZRR7 1453 aa19.41■□□□□ 0.7
SMARCD3-213ENST00000489503 ABCC1P33527 1531 aa19.41■□□□□ 0.7
SMARCD3-213ENST00000489503 SAMD9LQ8IVG5 1584 aa19.4■□□□□ 0.7
SMARCD3-213ENST00000489503 CCNB3Q8WWL7 1395 aa19.4■□□□□ 0.7
SMARCD3-213ENST00000489503 NCOA2Q15596 1464 aa19.4■□□□□ 0.7
SMARCD3-213ENST00000489503 ITSN2Q9NZM3 1697 aa19.4■□□□□ 0.7
SMARCD3-213ENST00000489503 ZMYM4Q5VZL5 1548 aa19.39■□□□□ 0.69
SMARCD3-213ENST00000489503 ARHGEF40Q8TER5 1519 aa19.39■□□□□ 0.69
SMARCD3-213ENST00000489503 MAP3K1Q13233 1512 aa19.38■□□□□ 0.69
SMARCD3-213ENST00000489503 KANK4Q5T7N3 995 aaPredicted RBP19.38■□□□□ 0.69
SMARCD3-213ENST00000489503 ARHGEF12Q9NZN5 1544 aa19.38■□□□□ 0.69
SMARCD3-213ENST00000489503 ZNF777Q9ULD5 760 aaPredicted RBP19.36■□□□□ 0.69
SMARCD3-213ENST00000489503 SYCP2Q9BX26 1530 aa19.35■□□□□ 0.69
SMARCD3-213ENST00000489503 ZFYVE16Q7Z3T8 1539 aa19.35■□□□□ 0.69
SMARCD3-213ENST00000489503 YEATS2Q9ULM3 1422 aa19.34■□□□□ 0.69
SMARCD3-213ENST00000489503 TRAPPC8Q9Y2L5 1435 aa19.34■□□□□ 0.69
SMARCD3-213ENST00000489503 KDM5CP41229 1560 aa19.33■□□□□ 0.69
SMARCD3-213ENST00000489503 CFDP1Q9UEE9 299 aaPredicted RBP19.32■□□□□ 0.68
SMARCD3-213ENST00000489503 ZNF518AQ6AHZ1 1483 aa19.32■□□□□ 0.68
SMARCD3-213ENST00000489503 SIGLEC1Q9BZZ2 1709 aa19.31■□□□□ 0.68
SMARCD3-213ENST00000489503 AFAP1Q8N556 730 aa19.3■□□□□ 0.68
SMARCD3-213ENST00000489503 HECW2Q9P2P5 1572 aa19.3■□□□□ 0.68
SMARCD3-213ENST00000489503 ZNF644Q9H582 1327 aaPredicted RBP19.29■□□□□ 0.68
SMARCD3-213ENST00000489503 KDM4FA0A1W2PPD8 638 aa19.29■□□□□ 0.68
SMARCD3-213ENST00000489503 APLP2Q06481 763 aa19.29■□□□□ 0.68
SMARCD3-213ENST00000489503 ABCA6Q8N139 1617 aa19.27■□□□□ 0.68
SMARCD3-213ENST00000489503 HNRNPMP52272 730 aaKnown RBP eCLIP19.26■□□□□ 0.67
SMARCD3-213ENST00000489503 CAMSAP2Q08AD1 1489 aa19.26■□□□□ 0.67
SMARCD3-213ENST00000489503 MAGI2Q86UL8 1455 aa19.26■□□□□ 0.67
SMARCD3-213ENST00000489503 DIP2CQ9Y2E4 1556 aa19.25■□□□□ 0.67
SMARCD3-213ENST00000489503 PLEKHH2Q8IVE3 1493 aa19.24■□□□□ 0.67
SMARCD3-213ENST00000489503 KIDINS220Q9ULH0 1771 aa19.24■□□□□ 0.67
SMARCD3-213ENST00000489503 KIAA1107Q9UPP5 1409 aa19.23■□□□□ 0.67
SMARCD3-213ENST00000489503 MYT1LQ9UL68 1186 aa19.22■□□□□ 0.67
SMARCD3-213ENST00000489503 MYOM3Q5VTT5 1437 aa19.22■□□□□ 0.67
SMARCD3-213ENST00000489503 BCORL1Q5H9F3 1711 aa19.21■□□□□ 0.67
SMARCD3-213ENST00000489503 AEBP2Q6ZN18 517 aaPredicted RBP19.21■□□□□ 0.67
SMARCD3-213ENST00000489503 MBD5Q9P267 1494 aa19.21■□□□□ 0.67
SMARCD3-213ENST00000489503 MLH3Q9UHC1 1453 aa19.21■□□□□ 0.67
SMARCD3-213ENST00000489503 INO80Q9ULG1 1556 aaPredicted RBP19.2■□□□□ 0.66
SMARCD3-213ENST00000489503 ARID4BQ4LE39 1312 aaPredicted RBP19.2■□□□□ 0.66
SMARCD3-213ENST00000489503 C9orf84Q5VXU9 1444 aa19.19■□□□□ 0.66
SMARCD3-213ENST00000489503 ATP10AO60312 1499 aa19.19■□□□□ 0.66
SMARCD3-213ENST00000489503 ATP7AQ04656 1500 aa19.19■□□□□ 0.66
SMARCD3-213ENST00000489503 ADAMTSL3P82987 1691 aa19.17■□□□□ 0.66
SMARCD3-213ENST00000489503 MADDQ8WXG6 1647 aa19.17■□□□□ 0.66
SMARCD3-213ENST00000489503 SPAG9O60271 1321 aaKnown RBP19.16■□□□□ 0.66
SMARCD3-213ENST00000489503 CCDC141Q6ZP82 1450 aa19.16■□□□□ 0.66
SMARCD3-213ENST00000489503 PTPN23Q9H3S7 1636 aa19.14■□□□□ 0.66
SMARCD3-213ENST00000489503 PPARGC1BQ86YN6 1023 aaKnown RBP19.14■□□□□ 0.65
SMARCD3-213ENST00000489503 ARHGEF5Q12774 1597 aa19.14■□□□□ 0.65
SMARCD3-213ENST00000489503 MIA2Q96PC5 1412 aa19.13■□□□□ 0.65
SMARCD3-213ENST00000489503 REREQ9P2R6 1566 aa19.13■□□□□ 0.65
SMARCD3-213ENST00000489503 RIMS1Q86UR5 1692 aaKnown RBP19.12■□□□□ 0.65
SMARCD3-213ENST00000489503 FGD6Q6ZV73 1430 aa19.12■□□□□ 0.65
SMARCD3-213ENST00000489503 MLECQ14165 292 aa19.12■□□□□ 0.65
SMARCD3-213ENST00000489503 ADGBQ8N7X0 1667 aa19.1■□□□□ 0.65
SMARCD3-213ENST00000489503 FER1L4A9Z1Z3 1794 aa19.09■□□□□ 0.65
SMARCD3-213ENST00000489503 PLXNC1O60486 1568 aa19.07■□□□□ 0.64
SMARCD3-213ENST00000489503 CROCC2H7BZ55 1655 aa19.07■□□□□ 0.64
SMARCD3-213ENST00000489503 TCOF1Q13428 1488 aaKnown RBP19.06■□□□□ 0.64
SMARCD3-213ENST00000489503 AGLP35573 1532 aa19.05■□□□□ 0.64
SMARCD3-213ENST00000489503 A2MP01023 1474 aa19.05■□□□□ 0.64
SMARCD3-213ENST00000489503 PTPRMP28827 1452 aa19.05■□□□□ 0.64
SMARCD3-213ENST00000489503 RTEL1-TNFRSF6BF6WH68 1400 aa19.04■□□□□ 0.64
SMARCD3-213ENST00000489503 MAST1Q9Y2H9 1570 aa19.04■□□□□ 0.64
SMARCD3-213ENST00000489503 DNMT1P26358 1616 aaKnown RBP19.03■□□□□ 0.64
SMARCD3-213ENST00000489503 ABCC5O15440 1437 aa19.01■□□□□ 0.63
SMARCD3-213ENST00000489503 PLPPR3Q6T4P5 718 aa19.01■□□□□ 0.63
SMARCD3-213ENST00000489503 DAPK1P53355 1430 aa19■□□□□ 0.63
SMARCD3-213ENST00000489503 RSPH4AQ5TD94 716 aa18.99■□□□□ 0.63
SMARCD3-213ENST00000489503 TSPY4P0CV99 314 aa18.98■□□□□ 0.63
SMARCD3-213ENST00000489503 TSPY10P0CW01 314 aa18.98■□□□□ 0.63
SMARCD3-213ENST00000489503 FAM50AQ14320 339 aaKnown RBP18.98■□□□□ 0.63
SMARCD3-213ENST00000489503 SHANK2Q9UPX8 1470 aa18.97■□□□□ 0.63
SMARCD3-213ENST00000489503 DHX29Q7Z478 1369 aaKnown RBP18.94■□□□□ 0.62
SMARCD3-213ENST00000489503 CLTCQ00610 1675 aaKnown RBP18.92■□□□□ 0.62
SMARCD3-213ENST00000489503 CHIC2Q9UKJ5 165 aa18.92■□□□□ 0.62
SMARCD3-213ENST00000489503 C3P01024 1663 aa18.92■□□□□ 0.62
SMARCD3-213ENST00000489503 CEBPAP49715 358 aaPredicted RBP18.9■□□□□ 0.62
SMARCD3-213ENST00000489503 GGT6Q6P531 493 aa18.9■□□□□ 0.62
SMARCD3-213ENST00000489503 KIF15Q9NS87 1388 aa18.9■□□□□ 0.62
SMARCD3-213ENST00000489503 KIF3BO15066 747 aa18.89■□□□□ 0.61
SMARCD3-213ENST00000489503 DUOX2Q9NRD8 1548 aa18.89■□□□□ 0.61
SMARCD3-213ENST00000489503 PTPRKQ15262 1439 aa18.88■□□□□ 0.61
SMARCD3-213ENST00000489503 EIF2AK4Q9P2K8 1649 aaKnown RBP18.88■□□□□ 0.61
SMARCD3-213ENST00000489503 MROH2AA6NES4 1674 aa18.87■□□□□ 0.61
SMARCD3-213ENST00000489503 RNF17Q9BXT8 1623 aaKnown RBP18.87■□□□□ 0.61
SMARCD3-213ENST00000489503 RRP7BPQ9NSQ0 103 aa18.87■□□□□ 0.61
SMARCD3-213ENST00000489503 ESF1Q9H501 851 aaKnown RBP18.86■□□□□ 0.61
SMARCD3-213ENST00000489503 MROH1Q8NDA8 1641 aa18.85■□□□□ 0.61
SMARCD3-213ENST00000489503 ADGRL2O95490 1459 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms