RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 PLCH2O75038 1416 aa17.39■□□□□ 0.38
C9orf3-220ENST00000489318 GCC2Q8IWJ2 1684 aa17.39■□□□□ 0.37
C9orf3-220ENST00000489318 ADGBQ8N7X0 1667 aa17.39■□□□□ 0.37
C9orf3-220ENST00000489318 AKNAQ7Z591 1439 aa17.38■□□□□ 0.37
C9orf3-220ENST00000489318 ARHGAP5Q13017 1502 aa17.38■□□□□ 0.37
C9orf3-220ENST00000489318 GLI2P10070 1586 aa17.38■□□□□ 0.37
C9orf3-220ENST00000489318 NPM1P06748 294 aaKnown RBP eCLIP17.38■□□□□ 0.37
C9orf3-220ENST00000489318 FAM50AQ14320 339 aaKnown RBP17.38■□□□□ 0.37
C9orf3-220ENST00000489318 PTPRKQ15262 1439 aa17.38■□□□□ 0.37
C9orf3-220ENST00000489318 DAPK1P53355 1430 aa17.37■□□□□ 0.37
C9orf3-220ENST00000489318 SHANK2Q9UPX8 1470 aa17.37■□□□□ 0.37
C9orf3-220ENST00000489318 CYB5RLQ6IPT4 315 aa17.36■□□□□ 0.37
C9orf3-220ENST00000489318 CFDP1Q9UEE9 299 aaPredicted RBP17.36■□□□□ 0.37
C9orf3-220ENST00000489318 ABCC1P33527 1531 aa17.36■□□□□ 0.37
C9orf3-220ENST00000489318 MAP3K4Q9Y6R4 1608 aa17.36■□□□□ 0.37
C9orf3-220ENST00000489318 PLEKHH2Q8IVE3 1493 aa17.35■□□□□ 0.37
C9orf3-220ENST00000489318 CFAP74Q9C0B2 1584 aa17.35■□□□□ 0.37
C9orf3-220ENST00000489318 ABCC5O15440 1437 aa17.34■□□□□ 0.37
C9orf3-220ENST00000489318 DIP2BQ9P265 1576 aa17.34■□□□□ 0.37
C9orf3-220ENST00000489318 MBD5Q9P267 1494 aa17.33■□□□□ 0.37
C9orf3-220ENST00000489318 HFM1A2PYH4 1435 aa17.33■□□□□ 0.36
C9orf3-220ENST00000489318 MAST1Q9Y2H9 1570 aa17.32■□□□□ 0.36
C9orf3-220ENST00000489318 SYCP2Q9BX26 1530 aa17.32■□□□□ 0.36
C9orf3-220ENST00000489318 ADGRL2O95490 1459 aa17.32■□□□□ 0.36
C9orf3-220ENST00000489318 KIAA1107Q9UPP5 1409 aa17.32■□□□□ 0.36
C9orf3-220ENST00000489318 ZNF644Q9H582 1327 aaPredicted RBP17.31■□□□□ 0.36
C9orf3-220ENST00000489318 ROCK1Q13464 1354 aa17.3■□□□□ 0.36
C9orf3-220ENST00000489318 KCNH8Q96L42 1107 aa17.3■□□□□ 0.36
C9orf3-220ENST00000489318 CCDC141Q6ZP82 1450 aa17.3■□□□□ 0.36
C9orf3-220ENST00000489318 SETD5Q9C0A6 1442 aa17.28■□□□□ 0.36
C9orf3-220ENST00000489318 FANCAO15360 1455 aa17.27■□□□□ 0.36
C9orf3-220ENST00000489318 NAIPQ13075 1403 aa17.27■□□□□ 0.35
C9orf3-220ENST00000489318 ARHGEF12Q9NZN5 1544 aa17.26■□□□□ 0.35
C9orf3-220ENST00000489318 KIF13AQ9H1H9 1805 aa17.26■□□□□ 0.35
C9orf3-220ENST00000489318 ITGAEP38570 1179 aa17.26■□□□□ 0.35
C9orf3-220ENST00000489318 PLXNC1O60486 1568 aa17.25■□□□□ 0.35
C9orf3-220ENST00000489318 RAB3GAP2Q9H2M9 1393 aa17.24■□□□□ 0.35
C9orf3-220ENST00000489318 PPRC1Q5VV67 1664 aaKnown RBP17.23■□□□□ 0.35
C9orf3-220ENST00000489318 CD109Q6YHK3 1445 aa17.23■□□□□ 0.35
C9orf3-220ENST00000489318 EFCAB2Q5VUJ9 269 aa17.23■□□□□ 0.35
C9orf3-220ENST00000489318 NEO1Q92859 1461 aa17.23■□□□□ 0.35
C9orf3-220ENST00000489318 C9orf84Q5VXU9 1444 aa17.22■□□□□ 0.35
C9orf3-220ENST00000489318 HRCP23327 699 aa17.22■□□□□ 0.35
C9orf3-220ENST00000489318 RSPH4AQ5TD94 716 aa17.22■□□□□ 0.35
C9orf3-220ENST00000489318 ZNF777Q9ULD5 760 aaPredicted RBP17.22■□□□□ 0.35
C9orf3-220ENST00000489318 INO80Q9ULG1 1556 aaPredicted RBP17.21■□□□□ 0.35
C9orf3-220ENST00000489318 NCOA1Q15788 1441 aa17.21■□□□□ 0.34
C9orf3-220ENST00000489318 ADGRL1O94910 1474 aa17.2■□□□□ 0.34
C9orf3-220ENST00000489318 KDM6BO15054 1643 aa17.19■□□□□ 0.34
C9orf3-220ENST00000489318 ZFYVE16Q7Z3T8 1539 aa17.19■□□□□ 0.34
C9orf3-220ENST00000489318 KDM5CP41229 1560 aa17.18■□□□□ 0.34
C9orf3-220ENST00000489318 ANKRD30AQ9BXX3 1397 aa17.16■□□□□ 0.34
C9orf3-220ENST00000489318 TRAPPC8Q9Y2L5 1435 aa17.16■□□□□ 0.34
C9orf3-220ENST00000489318 DHX57Q6P158 1386 aaKnown RBP17.15■□□□□ 0.34
C9orf3-220ENST00000489318 HNRNPMP52272 730 aaKnown RBP eCLIP17.15■□□□□ 0.34
C9orf3-220ENST00000489318 RTEL1-TNFRSF6BF6WH68 1400 aa17.14■□□□□ 0.33
C9orf3-220ENST00000489318 RICTORQ6R327 1708 aa17.14■□□□□ 0.33
C9orf3-220ENST00000489318 DNAJC5Q9H3Z4 198 aa17.14■□□□□ 0.33
C9orf3-220ENST00000489318 POGZQ7Z3K3 1410 aa17.13■□□□□ 0.33
C9orf3-220ENST00000489318 ZNF518AQ6AHZ1 1483 aa17.13■□□□□ 0.33
C9orf3-220ENST00000489318 ATP7AQ04656 1500 aa17.13■□□□□ 0.33
C9orf3-220ENST00000489318 SCAPERQ9BY12 1400 aa17.13■□□□□ 0.33
C9orf3-220ENST00000489318 TEX14Q8IWB6 1497 aa17.12■□□□□ 0.33
C9orf3-220ENST00000489318 CHIC2Q9UKJ5 165 aa17.12■□□□□ 0.33
C9orf3-220ENST00000489318 KIDINS220Q9ULH0 1771 aa17.11■□□□□ 0.33
C9orf3-220ENST00000489318 ACIN1Q9UKV3 1341 aaKnown RBP17.11■□□□□ 0.33
C9orf3-220ENST00000489318 HECW2Q9P2P5 1572 aa17.11■□□□□ 0.33
C9orf3-220ENST00000489318 TSPY4P0CV99 314 aa17.1■□□□□ 0.33
C9orf3-220ENST00000489318 TSPY10P0CW01 314 aa17.1■□□□□ 0.33
C9orf3-220ENST00000489318 RRP7BPQ9NSQ0 103 aa17.1■□□□□ 0.33
C9orf3-220ENST00000489318 DUOX2Q9NRD8 1548 aa17.1■□□□□ 0.33
C9orf3-220ENST00000489318 FRMPD1Q5SYB0 1578 aa17.1■□□□□ 0.33
C9orf3-220ENST00000489318 TSPOAP1O95153 1857 aa17.1■□□□□ 0.33
C9orf3-220ENST00000489318 CLSPNQ9HAW4 1339 aa17.09■□□□□ 0.33
C9orf3-220ENST00000489318 KIF15Q9NS87 1388 aa17.09■□□□□ 0.33
C9orf3-220ENST00000489318 KDM5DQ9BY66 1539 aa17.09■□□□□ 0.33
C9orf3-220ENST00000489318 UNC13BO14795 1591 aa17.09■□□□□ 0.33
C9orf3-220ENST00000489318 ANKRD50Q9ULJ7 1429 aa17.08■□□□□ 0.32
C9orf3-220ENST00000489318 EIF2AK4Q9P2K8 1649 aaKnown RBP17.07■□□□□ 0.32
C9orf3-220ENST00000489318 ZMYM4Q5VZL5 1548 aa17.07■□□□□ 0.32
C9orf3-220ENST00000489318 MLH3Q9UHC1 1453 aa17.07■□□□□ 0.32
C9orf3-220ENST00000489318 FAM69CQ0P6D2 419 aa17.07■□□□□ 0.32
C9orf3-220ENST00000489318 ERBINQ96RT1 1412 aa17.06■□□□□ 0.32
C9orf3-220ENST00000489318 CCER1Q8TC90 406 aaPredicted RBP17.06■□□□□ 0.32
C9orf3-220ENST00000489318 DENND4BO75064 1496 aaPredicted RBP17.05■□□□□ 0.32
C9orf3-220ENST00000489318 MAGI2Q86UL8 1455 aa17.05■□□□□ 0.32
C9orf3-220ENST00000489318 BCORL1Q5H9F3 1711 aa17.04■□□□□ 0.32
C9orf3-220ENST00000489318 DEPDC5O75140 1603 aa17.04■□□□□ 0.32
C9orf3-220ENST00000489318 ABCA6Q8N139 1617 aa17.03■□□□□ 0.32
C9orf3-220ENST00000489318 SPAG9O60271 1321 aaKnown RBP17.02■□□□□ 0.32
C9orf3-220ENST00000489318 ZEB1P37275 1124 aaPredicted RBP17.02■□□□□ 0.32
C9orf3-220ENST00000489318 IQGAP3Q86VI3 1631 aa17■□□□□ 0.31
C9orf3-220ENST00000489318 AFAP1Q8N556 730 aa17■□□□□ 0.31
C9orf3-220ENST00000489318 DIP2CQ9Y2E4 1556 aa17■□□□□ 0.31
C9orf3-220ENST00000489318 PZPP20742 1482 aa16.99■□□□□ 0.31
C9orf3-220ENST00000489318 RNF17Q9BXT8 1623 aaKnown RBP16.97■□□□□ 0.31
C9orf3-220ENST00000489318 PRDM15P57071 1507 aaPredicted RBP16.96■□□□□ 0.31
C9orf3-220ENST00000489318 REREQ9P2R6 1566 aa16.96■□□□□ 0.31
C9orf3-220ENST00000489318 MROH1Q8NDA8 1641 aa16.96■□□□□ 0.3
C9orf3-220ENST00000489318 VWDEQ8N2E2 1590 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms