RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 C2orf72A6NCS6 295 aa13.27□□□□□ -0.29
PTPN4-212ENST00000488896 TMC2Q8TDI7 906 aa13.27□□□□□ -0.29
PTPN4-212ENST00000488896 SNPHO15079 494 aa13.26□□□□□ -0.29
PTPN4-212ENST00000488896 KIF3CO14782 793 aa13.21□□□□□ -0.29
PTPN4-212ENST00000488896 ST18O60284 1047 aa13.19□□□□□ -0.3
PTPN4-212ENST00000488896 LCE2DQ5TA82 110 aaPredicted RBP13.19□□□□□ -0.3
PTPN4-212ENST00000488896 HOXB3P14651 431 aaPredicted RBP13.18□□□□□ -0.3
PTPN4-212ENST00000488896 DOK7Q18PE1 504 aa13.17□□□□□ -0.3
PTPN4-212ENST00000488896 CADPS2Q86UW7 1296 aa13.17□□□□□ -0.3
PTPN4-212ENST00000488896 ZNF710Q8N1W2 664 aa13.17□□□□□ -0.3
PTPN4-212ENST00000488896 GPHNQ9NQX3 736 aaPredicted RBP13.16□□□□□ -0.3
PTPN4-212ENST00000488896 NCKAP5LQ9HCH0 1330 aa13.14□□□□□ -0.31
PTPN4-212ENST00000488896 DSG2Q14126 1118 aa13.13□□□□□ -0.31
PTPN4-212ENST00000488896 PDE4AP27815 886 aa13.12□□□□□ -0.31
PTPN4-212ENST00000488896 LARP6Q9BRS8 491 aaKnown RBP13.12□□□□□ -0.31
PTPN4-212ENST00000488896 CRISPLD2Q9H0B8 497 aa13.12□□□□□ -0.31
PTPN4-212ENST00000488896 RIMBP2O15034 1052 aa13.11□□□□□ -0.31
PTPN4-212ENST00000488896 PLPP6Q8IY26 295 aa13.11□□□□□ -0.31
PTPN4-212ENST00000488896 MARVELD3Q96A59 401 aa13.11□□□□□ -0.31
PTPN4-212ENST00000488896 FOXK1P85037 733 aa13.1□□□□□ -0.31
PTPN4-212ENST00000488896 POTEMA6NI47 508 aa13.09□□□□□ -0.31
PTPN4-212ENST00000488896 POTEGQ6S5H5 508 aa13.08□□□□□ -0.32
PTPN4-212ENST00000488896 PPP1R15BQ5SWA1 713 aa13.07□□□□□ -0.32
PTPN4-212ENST00000488896 DDX27Q96GQ7 796 aaKnown RBP13.05□□□□□ -0.32
PTPN4-212ENST00000488896 EMP3P54852 163 aa13.04□□□□□ -0.32
PTPN4-212ENST00000488896 ARSIQ5FYB1 569 aa13.04□□□□□ -0.32
PTPN4-212ENST00000488896 KHSRPQ92945 711 aaKnown RBP eCLIP13.03□□□□□ -0.32
PTPN4-212ENST00000488896 TSHZ2Q9NRE2 1034 aa13.03□□□□□ -0.32
PTPN4-212ENST00000488896 HOXB1P14653 301 aaPredicted RBP13.01□□□□□ -0.33
PTPN4-212ENST00000488896 PLCB2Q00722 1185 aa13.01□□□□□ -0.33
PTPN4-212ENST00000488896 GPR153Q6NV75 609 aa13□□□□□ -0.33
PTPN4-212ENST00000488896 ZSWIM6Q9HCJ5 1215 aa13□□□□□ -0.33
PTPN4-212ENST00000488896 UPF1Q92900 1129 aaKnown RBP eCLIP12.99□□□□□ -0.33
PTPN4-212ENST00000488896 PCDHGA4Q9Y5G9 962 aa12.99□□□□□ -0.33
PTPN4-212ENST00000488896 SLC34A2O95436 690 aa12.98□□□□□ -0.33
PTPN4-212ENST00000488896 MFSD10Q14728 455 aa12.98□□□□□ -0.33
PTPN4-212ENST00000488896 FAM205CA6NFA0 338 aa12.97□□□□□ -0.33
PTPN4-212ENST00000488896 NUDT7P0C024 238 aa12.95□□□□□ -0.34
PTPN4-212ENST00000488896 ERBB3P21860 1342 aa12.93□□□□□ -0.34
PTPN4-212ENST00000488896 PTCD2Q8WV60 388 aaKnown RBP12.92□□□□□ -0.34
PTPN4-212ENST00000488896 TBC1D12O60347 775 aa12.91□□□□□ -0.34
PTPN4-212ENST00000488896 HAP1P54257 671 aaPredicted RBP12.91□□□□□ -0.34
PTPN4-212ENST00000488896 WDR70Q9NW82 654 aa12.91□□□□□ -0.34
PTPN4-212ENST00000488896 HS3ST6Q96QI5 342 aa12.9□□□□□ -0.34
PTPN4-212ENST00000488896 OXER1Q8TDS5 423 aa12.89□□□□□ -0.35
PTPN4-212ENST00000488896 POTEB3A0JP26 581 aa12.88□□□□□ -0.35
PTPN4-212ENST00000488896 VARS2Q5ST30 1063 aaKnown RBP12.88□□□□□ -0.35
PTPN4-212ENST00000488896 POTEBQ6S5H4 581 aa12.88□□□□□ -0.35
PTPN4-212ENST00000488896 EMILIN3Q9NT22 766 aa12.87□□□□□ -0.35
PTPN4-212ENST00000488896 CDAN1Q8IWY9 1227 aa12.86□□□□□ -0.35
PTPN4-212ENST00000488896 MAP3K9P80192 1104 aa12.85□□□□□ -0.35
PTPN4-212ENST00000488896 ZNF316A6NFI3 1004 aaPredicted RBP12.84□□□□□ -0.35
PTPN4-212ENST00000488896 LHX6Q9UPM6 363 aa12.84□□□□□ -0.35
PTPN4-212ENST00000488896 DPYSL4O14531 572 aa12.8□□□□□ -0.36
PTPN4-212ENST00000488896 CAMK2BQ13554 666 aa12.8□□□□□ -0.36
PTPN4-212ENST00000488896 E2F4Q16254 413 aa12.8□□□□□ -0.36
PTPN4-212ENST00000488896 EVI5O60447 810 aa12.79□□□□□ -0.36
PTPN4-212ENST00000488896 KDM4FA0A1W2PPD8 638 aa12.78□□□□□ -0.36
PTPN4-212ENST00000488896 PCDH10Q9P2E7 1040 aa12.74□□□□□ -0.37
PTPN4-212ENST00000488896 ZNF687Q8N1G0 1237 aa12.71□□□□□ -0.37
PTPN4-212ENST00000488896 ZNF454Q8N9F8 522 aa12.7□□□□□ -0.38
PTPN4-212ENST00000488896 PSDA5PKW4 1024 aaPredicted RBP12.68□□□□□ -0.38
PTPN4-212ENST00000488896 PPP4R3BQ5MIZ7 849 aa12.68□□□□□ -0.38
PTPN4-212ENST00000488896 ANO8Q9HCE9 1232 aaPredicted RBP12.68□□□□□ -0.38
PTPN4-212ENST00000488896 KRTAP3-3Q9BYR6 98 aa12.67□□□□□ -0.38
PTPN4-212ENST00000488896 KRTAP3-2Q9BYR7 98 aa12.67□□□□□ -0.38
PTPN4-212ENST00000488896 KCNV2Q8TDN2 545 aa12.66□□□□□ -0.38
PTPN4-212ENST00000488896 KDM2AQ9Y2K7 1162 aa12.66□□□□□ -0.38
PTPN4-212ENST00000488896 AXIN2Q9Y2T1 843 aa12.66□□□□□ -0.38
PTPN4-212ENST00000488896 FOSBP53539 338 aa12.63□□□□□ -0.39
PTPN4-212ENST00000488896 DDX12PQ92771 950 aa12.63□□□□□ -0.39
PTPN4-212ENST00000488896 PDIA6Q15084 440 aa12.62□□□□□ -0.39
PTPN4-212ENST00000488896 JPH4Q96JJ6 628 aa12.62□□□□□ -0.39
PTPN4-212ENST00000488896 POTEEQ6S8J3 1075 aa12.61□□□□□ -0.39
PTPN4-212ENST00000488896 PLSCR2Q9NRY7 297 aa12.6□□□□□ -0.39
PTPN4-212ENST00000488896 SPDYE16A6NNV3 312 aaPredicted RBP12.59□□□□□ -0.39
PTPN4-212ENST00000488896 PSEN2P49810 448 aa12.59□□□□□ -0.39
PTPN4-212ENST00000488896 ANKRD13DQ6ZTN6 518 aa12.59□□□□□ -0.39
PTPN4-212ENST00000488896 ARIH1Q9Y4X5 557 aaPredicted RBP12.59□□□□□ -0.39
PTPN4-212ENST00000488896 PCDHGA10Q9Y5H3 936 aa12.59□□□□□ -0.39
PTPN4-212ENST00000488896 VSIG10Q8N0Z9 540 aa12.58□□□□□ -0.4
PTPN4-212ENST00000488896 ARHGEF1Q92888 912 aaKnown RBP12.58□□□□□ -0.4
PTPN4-212ENST00000488896 ZDHHC16Q969W1 377 aa12.58□□□□□ -0.4
PTPN4-212ENST00000488896 KCNK17Q96T54 332 aa12.58□□□□□ -0.4
PTPN4-212ENST00000488896 ARHGAP33O14559 1287 aa12.57□□□□□ -0.4
PTPN4-212ENST00000488896 PBX2P40425 430 aa12.57□□□□□ -0.4
PTPN4-212ENST00000488896 P3H3Q8IVL6 736 aa12.57□□□□□ -0.4
PTPN4-212ENST00000488896 GRXCR2A6NFK2 248 aa12.56□□□□□ -0.4
PTPN4-212ENST00000488896 ADAM33Q9BZ11 813 aa12.56□□□□□ -0.4
PTPN4-212ENST00000488896 PHF14O94880 888 aa12.55□□□□□ -0.4
PTPN4-212ENST00000488896 RBM33Q96EV2 1170 aaKnown RBP12.55□□□□□ -0.4
PTPN4-212ENST00000488896 LSM11P83369 360 aaKnown RBP eCLIP12.54□□□□□ -0.4
PTPN4-212ENST00000488896 NBR1Q14596 966 aa12.54□□□□□ -0.4
PTPN4-212ENST00000488896 TYW1BQ6NUM6 668 aa12.54□□□□□ -0.4
PTPN4-212ENST00000488896 PTGER2P43116 358 aa12.53□□□□□ -0.4
PTPN4-212ENST00000488896 DMRTA1Q5VZB9 504 aa12.53□□□□□ -0.4
PTPN4-212ENST00000488896 KCNH8Q96L42 1107 aa12.53□□□□□ -0.4
PTPN4-212ENST00000488896 BCL2L12Q9HB09 334 aa12.53□□□□□ -0.4
PTPN4-212ENST00000488896 PTPREP23469 700 aa12.51□□□□□ -0.41
PTPN4-212ENST00000488896 SPNS2Q8IVW8 549 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms