RNA–Protein interactions for RNA: ENST00000488494.5

ITGB1-215, Transcript of integrin subunit beta 1, humanhuman

TSL 4

Gene ITGB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB1-215ENST00000488494 PREX2Q70Z35 1606 aa28.58■■■□□ 2.17
ITGB1-215ENST00000488494 SCAPERQ9BY12 1400 aa28.55■■■□□ 2.16
ITGB1-215ENST00000488494 CDC42BPBQ9Y5S2 1711 aa28.53■■■□□ 2.16
ITGB1-215ENST00000488494 EFCAB2Q5VUJ9 269 aa28.53■■■□□ 2.16
ITGB1-215ENST00000488494 ZFYVE16Q7Z3T8 1539 aa28.53■■■□□ 2.16
ITGB1-215ENST00000488494 LOC105371045A0A1W2PR82 267 aa28.51■■■□□ 2.15
ITGB1-215ENST00000488494 CDC42BPAQ5VT25 1732 aa28.49■■■□□ 2.15
ITGB1-215ENST00000488494 YEATS2Q9ULM3 1422 aa28.47■■■□□ 2.15
ITGB1-215ENST00000488494 MAGI2Q86UL8 1455 aa28.46■■■□□ 2.15
ITGB1-215ENST00000488494 ABCC1P33527 1531 aa28.45■■■□□ 2.15
ITGB1-215ENST00000488494 ZNF518AQ6AHZ1 1483 aa28.44■■■□□ 2.14
ITGB1-215ENST00000488494 MTUS2Q5JR59 1369 aa28.43■■■□□ 2.14
ITGB1-215ENST00000488494 BCORL1Q5H9F3 1711 aa28.43■■■□□ 2.14
ITGB1-215ENST00000488494 EHBP1L1Q8N3D4 1523 aa28.43■■■□□ 2.14
ITGB1-215ENST00000488494 ADAMTSL3P82987 1691 aa28.42■■■□□ 2.14
ITGB1-215ENST00000488494 KDM5CP41229 1560 aa28.42■■■□□ 2.14
ITGB1-215ENST00000488494 SIGLEC1Q9BZZ2 1709 aa28.4■■■□□ 2.14
ITGB1-215ENST00000488494 ITSN2Q9NZM3 1697 aa28.4■■■□□ 2.14
ITGB1-215ENST00000488494 ARID4BQ4LE39 1312 aaPredicted RBP28.4■■■□□ 2.14
ITGB1-215ENST00000488494 GPATCH8Q9UKJ3 1502 aaKnown RBP28.38■■■□□ 2.13
ITGB1-215ENST00000488494 HECW2Q9P2P5 1572 aa28.37■■■□□ 2.13
ITGB1-215ENST00000488494 VPS8Q8N3P4 1428 aa28.37■■■□□ 2.13
ITGB1-215ENST00000488494 MADDQ8WXG6 1647 aa28.36■■■□□ 2.13
ITGB1-215ENST00000488494 ARHGEF12Q9NZN5 1544 aa28.36■■■□□ 2.13
ITGB1-215ENST00000488494 SAMD9LQ8IVG5 1584 aa28.36■■■□□ 2.13
ITGB1-215ENST00000488494 TIAM1Q13009 1591 aa28.33■■■□□ 2.13
ITGB1-215ENST00000488494 CCNB3Q8WWL7 1395 aa28.32■■■□□ 2.12
ITGB1-215ENST00000488494 TRAPPC8Q9Y2L5 1435 aa28.32■■■□□ 2.12
ITGB1-215ENST00000488494 AFAP1Q8N556 730 aa28.31■■■□□ 2.12
ITGB1-215ENST00000488494 C9orf84Q5VXU9 1444 aa28.31■■■□□ 2.12
ITGB1-215ENST00000488494 SYCP2Q9BX26 1530 aa28.31■■■□□ 2.12
ITGB1-215ENST00000488494 DIP2CQ9Y2E4 1556 aa28.29■■■□□ 2.12
ITGB1-215ENST00000488494 ATP10AO60312 1499 aa28.29■■■□□ 2.12
ITGB1-215ENST00000488494 PTPRMP28827 1452 aa28.29■■■□□ 2.12
ITGB1-215ENST00000488494 ABCA6Q8N139 1617 aa28.29■■■□□ 2.12
ITGB1-215ENST00000488494 ZNF777Q9ULD5 760 aaPredicted RBP28.27■■■□□ 2.12
ITGB1-215ENST00000488494 RIMS1Q86UR5 1692 aaKnown RBP28.26■■■□□ 2.12
ITGB1-215ENST00000488494 MLH3Q9UHC1 1453 aa28.26■■■□□ 2.11
ITGB1-215ENST00000488494 SUPT6HQ7KZ85 1726 aaKnown RBP28.25■■■□□ 2.11
ITGB1-215ENST00000488494 CFDP1Q9UEE9 299 aaPredicted RBP28.23■■■□□ 2.11
ITGB1-215ENST00000488494 PLEKHH2Q8IVE3 1493 aa28.22■■■□□ 2.11
ITGB1-215ENST00000488494 MYT1LQ9UL68 1186 aa28.22■■■□□ 2.11
ITGB1-215ENST00000488494 REREQ9P2R6 1566 aa28.21■■■□□ 2.11
ITGB1-215ENST00000488494 NCOA2Q15596 1464 aa28.21■■■□□ 2.11
ITGB1-215ENST00000488494 KIDINS220Q9ULH0 1771 aa28.2■■■□□ 2.11
ITGB1-215ENST00000488494 FER1L4A9Z1Z3 1794 aa28.19■■■□□ 2.1
ITGB1-215ENST00000488494 KIAA1107Q9UPP5 1409 aa28.18■■■□□ 2.1
ITGB1-215ENST00000488494 LRRC9Q6ZRR7 1453 aa28.16■■■□□ 2.1
ITGB1-215ENST00000488494 MLECQ14165 292 aa28.16■■■□□ 2.1
ITGB1-215ENST00000488494 INO80Q9ULG1 1556 aaPredicted RBP28.15■■■□□ 2.1
ITGB1-215ENST00000488494 MAP3K1Q13233 1512 aa28.14■■■□□ 2.1
ITGB1-215ENST00000488494 HNRNPMP52272 730 aaKnown RBP eCLIP28.13■■■□□ 2.092e-7■■■□□ 17
ITGB1-215ENST00000488494 ATP7AQ04656 1500 aa28.13■■■□□ 2.09
ITGB1-215ENST00000488494 SPAG9O60271 1321 aaKnown RBP28.1■■■□□ 2.09
ITGB1-215ENST00000488494 ZNF644Q9H582 1327 aaPredicted RBP28.1■■■□□ 2.09
ITGB1-215ENST00000488494 AGLP35573 1532 aa28.09■■■□□ 2.09
ITGB1-215ENST00000488494 CAMSAP2Q08AD1 1489 aa28.08■■■□□ 2.09
ITGB1-215ENST00000488494 MBD5Q9P267 1494 aa28.06■■■□□ 2.08
ITGB1-215ENST00000488494 PLPPR3Q6T4P5 718 aa28.03■■■□□ 2.08
ITGB1-215ENST00000488494 KANK4Q5T7N3 995 aaPredicted RBP28.02■■■□□ 2.08
ITGB1-215ENST00000488494 PLXNC1O60486 1568 aa28.02■■■□□ 2.08
ITGB1-215ENST00000488494 CCDC141Q6ZP82 1450 aa28■■■□□ 2.07
ITGB1-215ENST00000488494 LMTK3Q96Q04 1460 aa27.99■■■□□ 2.07
ITGB1-215ENST00000488494 ADGBQ8N7X0 1667 aa27.97■■■□□ 2.07
ITGB1-215ENST00000488494 A2MP01023 1474 aa27.96■■■□□ 2.07
ITGB1-215ENST00000488494 ARHGEF5Q12774 1597 aa27.94■■■□□ 2.06
ITGB1-215ENST00000488494 MYOM3Q5VTT5 1437 aa27.94■■■□□ 2.06
ITGB1-215ENST00000488494 APLP2Q06481 763 aa27.92■■■□□ 2.06
ITGB1-215ENST00000488494 RTEL1-TNFRSF6BF6WH68 1400 aa27.92■■■□□ 2.06
ITGB1-215ENST00000488494 C3P01024 1663 aa27.89■■■□□ 2.06
ITGB1-215ENST00000488494 MIA2Q96PC5 1412 aa27.88■■■□□ 2.05
ITGB1-215ENST00000488494 CEBPAP49715 358 aaPredicted RBP27.87■■■□□ 2.05
ITGB1-215ENST00000488494 PREX1Q8TCU6 1659 aa27.87■■■□□ 2.05
ITGB1-215ENST00000488494 CNTLNQ9NXG0 1405 aa27.86■■■□□ 2.05
ITGB1-215ENST00000488494 ESF1Q9H501 851 aaKnown RBP27.85■■■□□ 2.05
ITGB1-215ENST00000488494 MROH2AA6NES4 1674 aa27.84■■■□□ 2.05
ITGB1-215ENST00000488494 RSPH4AQ5TD94 716 aa27.82■■■□□ 2.04
ITGB1-215ENST00000488494 MAST1Q9Y2H9 1570 aa27.81■■■□□ 2.04
ITGB1-215ENST00000488494 CLTCQ00610 1675 aaKnown RBP27.81■■■□□ 2.04
ITGB1-215ENST00000488494 PTPN23Q9H3S7 1636 aa27.79■■■□□ 2.04
ITGB1-215ENST00000488494 DHX29Q7Z478 1369 aaKnown RBP27.78■■■□□ 2.04
ITGB1-215ENST00000488494 HSPA2P54652 639 aa27.78■■■□□ 2.04
ITGB1-215ENST00000488494 UHRF1BP1Q6BDS2 1440 aa27.75■■■□□ 2.03
ITGB1-215ENST00000488494 CROCC2H7BZ55 1655 aa27.75■■■□□ 2.03
ITGB1-215ENST00000488494 TSPY4P0CV99 314 aa27.75■■■□□ 2.03
ITGB1-215ENST00000488494 TSPY10P0CW01 314 aa27.75■■■□□ 2.03
ITGB1-215ENST00000488494 FGD6Q6ZV73 1430 aa27.75■■■□□ 2.03
ITGB1-215ENST00000488494 GGT6Q6P531 493 aa27.74■■■□□ 2.03
ITGB1-215ENST00000488494 TCOF1Q13428 1488 aaKnown RBP27.7■■■□□ 2.03
ITGB1-215ENST00000488494 SHANK2Q9UPX8 1470 aa27.7■■■□□ 2.02
ITGB1-215ENST00000488494 ZMYM3Q14202 1370 aa27.69■■■□□ 2.02
ITGB1-215ENST00000488494 NPATQ14207 1427 aa27.68■■■□□ 2.02
ITGB1-215ENST00000488494 DNMT1P26358 1616 aaKnown RBP27.68■■■□□ 2.02
ITGB1-215ENST00000488494 KDM5DQ9BY66 1539 aa27.67■■■□□ 2.02
ITGB1-215ENST00000488494 KIF3BO15066 747 aa27.67■■■□□ 2.02
ITGB1-215ENST00000488494 FAM135AQ9P2D6 1515 aa27.66■■■□□ 2.02
ITGB1-215ENST00000488494 ABCC5O15440 1437 aa27.66■■■□□ 2.02
ITGB1-215ENST00000488494 EIF2AK4Q9P2K8 1649 aaKnown RBP27.65■■■□□ 2.02
ITGB1-215ENST00000488494 RNF17Q9BXT8 1623 aaKnown RBP27.64■■■□□ 2.02
ITGB1-215ENST00000488494 DAPK1P53355 1430 aa27.64■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms