RNA–Protein interactions for RNA: ENST00000488427.1

ITGB1-214, Transcript of integrin subunit beta 1, humanhuman

TSL 1 (best)

Gene ITGB1, Length 861 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB1-214ENST00000488427 SOX12O15370 315 aa11.22□□□□□ -0.61
ITGB1-214ENST00000488427 ZNF710Q8N1W2 664 aa11.22□□□□□ -0.61
ITGB1-214ENST00000488427 HOXB3P14651 431 aaPredicted RBP11.2□□□□□ -0.62
ITGB1-214ENST00000488427 DOK7Q18PE1 504 aa11.2□□□□□ -0.62
ITGB1-214ENST00000488427 POTEB3A0JP26 581 aa11.18□□□□□ -0.62
ITGB1-214ENST00000488427 POTEBQ6S5H4 581 aa11.18□□□□□ -0.62
ITGB1-214ENST00000488427 NLRP6P59044 892 aa11.17□□□□□ -0.62
ITGB1-214ENST00000488427 RIMBP2O15034 1052 aa11.16□□□□□ -0.62
ITGB1-214ENST00000488427 SPRYD3Q8NCJ5 442 aa11.16□□□□□ -0.62
ITGB1-214ENST00000488427 HOXB1P14653 301 aaPredicted RBP11.15□□□□□ -0.62
ITGB1-214ENST00000488427 MICALL2Q8IY33 904 aa11.15□□□□□ -0.62
ITGB1-214ENST00000488427 KRTAP3-3Q9BYR6 98 aa11.15□□□□□ -0.62
ITGB1-214ENST00000488427 KRTAP3-2Q9BYR7 98 aa11.15□□□□□ -0.62
ITGB1-214ENST00000488427 ERBB3P21860 1342 aa11.11□□□□□ -0.63
ITGB1-214ENST00000488427 PHF8Q9UPP1 1060 aa11.11□□□□□ -0.63
ITGB1-214ENST00000488427 PAXIP1Q6ZW49 1069 aaPredicted RBP11.09□□□□□ -0.63
ITGB1-214ENST00000488427 MS4A4AQ96JQ5 239 aa11.09□□□□□ -0.63
ITGB1-214ENST00000488427 PLCB2Q00722 1185 aa11.08□□□□□ -0.64
ITGB1-214ENST00000488427 CFAP44Q96MT7 982 aa11.08□□□□□ -0.64
ITGB1-214ENST00000488427 TMEM92Q6UXU6 159 aa11.07□□□□□ -0.64
ITGB1-214ENST00000488427 NKX1-1Q15270 411 aaPredicted RBP11.06□□□□□ -0.64
ITGB1-214ENST00000488427 ZSWIM6Q9HCJ5 1215 aa11.06□□□□□ -0.64
ITGB1-214ENST00000488427 MFRPQ9BY79 579 aa11.05□□□□□ -0.64
ITGB1-214ENST00000488427 VARS2Q5ST30 1063 aaKnown RBP11.03□□□□□ -0.64
ITGB1-214ENST00000488427 GTPBP6O43824 516 aaPredicted RBP11.02□□□□□ -0.65
ITGB1-214ENST00000488427 FBXO22Q8NEZ5 403 aa11□□□□□ -0.65
ITGB1-214ENST00000488427 GPR153Q6NV75 609 aa10.98□□□□□ -0.65
ITGB1-214ENST00000488427 ZNF687Q8N1G0 1237 aa10.95□□□□□ -0.66
ITGB1-214ENST00000488427 HAP1P54257 671 aaPredicted RBP10.93□□□□□ -0.66
ITGB1-214ENST00000488427 ARSIQ5FYB1 569 aa10.93□□□□□ -0.66
ITGB1-214ENST00000488427 RNF166Q96A37 237 aaPredicted RBP10.91□□□□□ -0.66
ITGB1-214ENST00000488427 SLC24A1O60721 1099 aa10.89□□□□□ -0.67
ITGB1-214ENST00000488427 MYT1LQ9UL68 1186 aa10.87□□□□□ -0.67
ITGB1-214ENST00000488427 ZNF316A6NFI3 1004 aaPredicted RBP10.86□□□□□ -0.67
ITGB1-214ENST00000488427 KHSRPQ92945 711 aaKnown RBP eCLIP10.86□□□□□ -0.674e-8■□□□□ 8.6
ITGB1-214ENST00000488427 C2orf72A6NCS6 295 aa10.85□□□□□ -0.67
ITGB1-214ENST00000488427 KIF3CO14782 793 aa10.85□□□□□ -0.67
ITGB1-214ENST00000488427 PTGER2P43116 358 aa10.84□□□□□ -0.67
ITGB1-214ENST00000488427 PPP1R37O75864 691 aa10.83□□□□□ -0.68
ITGB1-214ENST00000488427 ANKRD13DQ6ZTN6 518 aa10.81□□□□□ -0.68
ITGB1-214ENST00000488427 VSIG10Q8N0Z9 540 aa10.81□□□□□ -0.68
ITGB1-214ENST00000488427 TMC2Q8TDI7 906 aa10.81□□□□□ -0.68
ITGB1-214ENST00000488427 PDE4AP27815 886 aa10.8□□□□□ -0.68
ITGB1-214ENST00000488427 NUDT7P0C024 238 aa10.79□□□□□ -0.68
ITGB1-214ENST00000488427 TSHZ2Q9NRE2 1034 aa10.79□□□□□ -0.68
ITGB1-214ENST00000488427 WDR70Q9NW82 654 aa10.79□□□□□ -0.68
ITGB1-214ENST00000488427 SLC34A2O95436 690 aa10.77□□□□□ -0.69
ITGB1-214ENST00000488427 LSM11P83369 360 aaKnown RBP eCLIP10.76□□□□□ -0.69
ITGB1-214ENST00000488427 PCDHGA4Q9Y5G9 962 aa10.76□□□□□ -0.69
ITGB1-214ENST00000488427 PBX2P40425 430 aa10.74□□□□□ -0.69
ITGB1-214ENST00000488427 LHX6Q9UPM6 363 aa10.73□□□□□ -0.69
ITGB1-214ENST00000488427 GPHNQ9NQX3 736 aaPredicted RBP10.71□□□□□ -0.69
ITGB1-214ENST00000488427 DDX27Q96GQ7 796 aaKnown RBP10.7□□□□□ -0.7
ITGB1-214ENST00000488427 CRISPLD2Q9H0B8 497 aa10.7□□□□□ -0.7
ITGB1-214ENST00000488427 LARP6Q9BRS8 491 aaKnown RBP10.69□□□□□ -0.7
ITGB1-214ENST00000488427 P3H3Q8IVL6 736 aa10.68□□□□□ -0.7
ITGB1-214ENST00000488427 PSDA5PKW4 1024 aaPredicted RBP10.67□□□□□ -0.7
ITGB1-214ENST00000488427 AXIN2Q9Y2T1 843 aa10.67□□□□□ -0.7
ITGB1-214ENST00000488427 CADPS2Q86UW7 1296 aa10.66□□□□□ -0.7
ITGB1-214ENST00000488427 FOXK1P85037 733 aa10.65□□□□□ -0.7
ITGB1-214ENST00000488427 MFSD10Q14728 455 aa10.65□□□□□ -0.7
ITGB1-214ENST00000488427 POTEEQ6S8J3 1075 aa10.65□□□□□ -0.7
ITGB1-214ENST00000488427 NCKAP5LQ9HCH0 1330 aa10.64□□□□□ -0.71
ITGB1-214ENST00000488427 PPP1R15BQ5SWA1 713 aa10.64□□□□□ -0.71
ITGB1-214ENST00000488427 ARHGAP33O14559 1287 aa10.62□□□□□ -0.71
ITGB1-214ENST00000488427 PTCD2Q8WV60 388 aaKnown RBP10.62□□□□□ -0.71
ITGB1-214ENST00000488427 PLPP6Q8IY26 295 aa10.61□□□□□ -0.71
ITGB1-214ENST00000488427 E2F4Q16254 413 aa10.59□□□□□ -0.71
ITGB1-214ENST00000488427 ADGRD1Q6QNK2 874 aa10.59□□□□□ -0.71
ITGB1-214ENST00000488427 TBC1D12O60347 775 aa10.58□□□□□ -0.72
ITGB1-214ENST00000488427 DSG2Q14126 1118 aa10.58□□□□□ -0.72
ITGB1-214ENST00000488427 KDM4FA0A1W2PPD8 638 aa10.57□□□□□ -0.72
ITGB1-214ENST00000488427 KDM2AQ9Y2K7 1162 aa10.56□□□□□ -0.72
ITGB1-214ENST00000488427 PPP4R3BQ5MIZ7 849 aa10.55□□□□□ -0.72
ITGB1-214ENST00000488427 HCSTQ9UBK5 93 aa10.55□□□□□ -0.72
ITGB1-214ENST00000488427 TK2O00142 265 aa10.54□□□□□ -0.72
ITGB1-214ENST00000488427 PSEN2P49810 448 aa10.52□□□□□ -0.73
ITGB1-214ENST00000488427 CAMK2BQ13554 666 aa10.52□□□□□ -0.73
ITGB1-214ENST00000488427 DMRTA1Q5VZB9 504 aa10.51□□□□□ -0.73
ITGB1-214ENST00000488427 ARHGEF1Q92888 912 aaKnown RBP10.51□□□□□ -0.73
ITGB1-214ENST00000488427 KCNH8Q96L42 1107 aa10.51□□□□□ -0.73
ITGB1-214ENST00000488427 PLA2G2EQ9NZK7 142 aa10.5□□□□□ -0.73
ITGB1-214ENST00000488427 STAC3Q96MF2 364 aa10.49□□□□□ -0.73
ITGB1-214ENST00000488427 HRO43593 1189 aa10.48□□□□□ -0.73
ITGB1-214ENST00000488427 ARIH1Q9Y4X5 557 aaPredicted RBP10.48□□□□□ -0.73
ITGB1-214ENST00000488427 MAP3K9P80192 1104 aa10.47□□□□□ -0.73
ITGB1-214ENST00000488427 NBR1Q14596 966 aa10.47□□□□□ -0.73
ITGB1-214ENST00000488427 KCNK17Q96T54 332 aa10.46□□□□□ -0.73
ITGB1-214ENST00000488427 SPDYE16A6NNV3 312 aaPredicted RBP10.45□□□□□ -0.74
ITGB1-214ENST00000488427 KCNV2Q8TDN2 545 aa10.45□□□□□ -0.74
ITGB1-214ENST00000488427 OXER1Q8TDS5 423 aa10.45□□□□□ -0.74
ITGB1-214ENST00000488427 UPF1Q92900 1129 aaKnown RBP eCLIP10.45□□□□□ -0.74
ITGB1-214ENST00000488427 TULP1O00294 542 aaPredicted RBP10.44□□□□□ -0.74
ITGB1-214ENST00000488427 KCTD12Q96CX2 325 aaKnown RBP10.43□□□□□ -0.74
ITGB1-214ENST00000488427 ZNF454Q8N9F8 522 aa10.42□□□□□ -0.74
ITGB1-214ENST00000488427 BCANQ96GW7 911 aa10.41□□□□□ -0.74
ITGB1-214ENST00000488427 EMILIN3Q9NT22 766 aa10.4□□□□□ -0.74
ITGB1-214ENST00000488427 DPYSL4O14531 572 aa10.39□□□□□ -0.75
ITGB1-214ENST00000488427 BCL2L12Q9HB09 334 aa10.38□□□□□ -0.75
ITGB1-214ENST00000488427 VPS9D1Q9Y2B5 631 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 90.4 ms