RNA–Protein interactions for RNA: ENST00000487890.5

GPNMB-212, Transcript of glycoprotein nmb, humanhuman

TSL 5

Gene GPNMB, Length 577 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-212ENST00000487890 TRPC6Q9Y210 931 aa6.3□□□□□ -1.4
GPNMB-212ENST00000487890 TRIM66O15016 1216 aa6.28□□□□□ -1.4
GPNMB-212ENST00000487890 GOLGA2Q08379 1002 aa6.28□□□□□ -1.4
GPNMB-212ENST00000487890 PIP4P2Q8N4L2 257 aa6.28□□□□□ -1.4
GPNMB-212ENST00000487890 KDM4CQ9H3R0 1056 aa6.28□□□□□ -1.4
GPNMB-212ENST00000487890 PPP1R15BQ5SWA1 713 aa6.27□□□□□ -1.41
GPNMB-212ENST00000487890 GPHNQ9NQX3 736 aaPredicted RBP6.27□□□□□ -1.41
GPNMB-212ENST00000487890 DPYSL4O14531 572 aa6.26□□□□□ -1.41
GPNMB-212ENST00000487890 CD44P16070 742 aaKnown RBP6.26□□□□□ -1.41
GPNMB-212ENST00000487890 MKRN3Q13064 507 aaKnown RBP6.26□□□□□ -1.41
GPNMB-212ENST00000487890 EMILIN3Q9NT22 766 aa6.26□□□□□ -1.41
GPNMB-212ENST00000487890 PDE4DQ08499 809 aa6.25□□□□□ -1.41
GPNMB-212ENST00000487890 ILDR1Q86SU0 546 aaPredicted RBP6.24□□□□□ -1.41
GPNMB-212ENST00000487890 MS4A3Q96HJ5 214 aa6.24□□□□□ -1.41
GPNMB-212ENST00000487890 ZMYND15Q9H091 742 aa6.24□□□□□ -1.41
GPNMB-212ENST00000487890 SPDYE16A6NNV3 312 aaPredicted RBP6.23□□□□□ -1.41
GPNMB-212ENST00000487890 GPR37O15354 613 aa6.23□□□□□ -1.41
GPNMB-212ENST00000487890 DSG2Q14126 1118 aa6.23□□□□□ -1.41
GPNMB-212ENST00000487890 CHRDL2Q6WN34 429 aa6.23□□□□□ -1.41
GPNMB-212ENST00000487890 PDIA6Q15084 440 aa6.22□□□□□ -1.41
GPNMB-212ENST00000487890 DPY19L2Q6NUT2 758 aa6.22□□□□□ -1.41
GPNMB-212ENST00000487890 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.22□□□□□ -1.41
GPNMB-212ENST00000487890 POTEHQ6S545 545 aa6.21□□□□□ -1.42
GPNMB-212ENST00000487890 FAM117AQ9C073 453 aa6.21□□□□□ -1.42
GPNMB-212ENST00000487890 UBTFP17480 764 aaKnown RBP6.2□□□□□ -1.42
GPNMB-212ENST00000487890 TTLL13PA6NNM8 815 aa6.19□□□□□ -1.42
GPNMB-212ENST00000487890 TIE1P35590 1138 aa6.18□□□□□ -1.42
GPNMB-212ENST00000487890 RSPH6AQ9H0K4 717 aa6.18□□□□□ -1.42
GPNMB-212ENST00000487890 MINK1Q8N4C8 1332 aaPredicted RBP6.18□□□□□ -1.42
GPNMB-212ENST00000487890 PLEKHG3A1L390 1219 aa6.17□□□□□ -1.42
GPNMB-212ENST00000487890 ZNF316A6NFI3 1004 aaPredicted RBP6.17□□□□□ -1.42
GPNMB-212ENST00000487890 FOXK1P85037 733 aa6.17□□□□□ -1.42
GPNMB-212ENST00000487890 PLPP6Q8IY26 295 aa6.17□□□□□ -1.42
GPNMB-212ENST00000487890 MICALL2Q8IY33 904 aa6.17□□□□□ -1.42
GPNMB-212ENST00000487890 BMP2KQ9NSY1 1161 aaPredicted RBP6.17□□□□□ -1.42
GPNMB-212ENST00000487890 NUTM2FA1L443 756 aa6.16□□□□□ -1.42
GPNMB-212ENST00000487890 GRXCR2A6NFK2 248 aa6.16□□□□□ -1.42
GPNMB-212ENST00000487890 IRF6O14896 467 aa6.16□□□□□ -1.42
GPNMB-212ENST00000487890 TMC2Q8TDI7 906 aa6.16□□□□□ -1.42
GPNMB-212ENST00000487890 CCDC102AQ96A19 550 aa6.16□□□□□ -1.42
GPNMB-212ENST00000487890 OSBPP22059 807 aa6.14□□□□□ -1.43
GPNMB-212ENST00000487890 FECHP22830 423 aa6.14□□□□□ -1.43
GPNMB-212ENST00000487890 MAP2K5Q13163 448 aa6.14□□□□□ -1.43
GPNMB-212ENST00000487890 C1orf115Q9H7X2 142 aa6.14□□□□□ -1.43
GPNMB-212ENST00000487890 TRIM35Q9UPQ4 493 aa6.14□□□□□ -1.43
GPNMB-212ENST00000487890 C2orf72A6NCS6 295 aa6.13□□□□□ -1.43
GPNMB-212ENST00000487890 C19orf67A6NJJ6 358 aa6.13□□□□□ -1.43
GPNMB-212ENST00000487890 MAP3K9P80192 1104 aa6.13□□□□□ -1.43
GPNMB-212ENST00000487890 AMHR2Q16671 573 aa6.13□□□□□ -1.43
GPNMB-212ENST00000487890 PARP9Q8IXQ6 854 aa6.13□□□□□ -1.43
GPNMB-212ENST00000487890 PDCD7Q8N8D1 485 aaKnown RBP6.13□□□□□ -1.43
GPNMB-212ENST00000487890 DDRGK1Q96HY6 314 aa6.13□□□□□ -1.43
GPNMB-212ENST00000487890 KIF3CO14782 793 aa6.12□□□□□ -1.43
GPNMB-212ENST00000487890 GNPATO15228 680 aa6.12□□□□□ -1.43
GPNMB-212ENST00000487890 PODXL2Q9NZ53 605 aa6.12□□□□□ -1.43
GPNMB-212ENST00000487890 ARID3AQ99856 593 aa6.11□□□□□ -1.43
GPNMB-212ENST00000487890 TMEM121BQ9BXQ6 578 aaPredicted RBP6.11□□□□□ -1.43
GPNMB-212ENST00000487890 GALR2O43603 387 aaPredicted RBP6.1□□□□□ -1.43
GPNMB-212ENST00000487890 PRIM1P49642 420 aaKnown RBP6.1□□□□□ -1.43
GPNMB-212ENST00000487890 UPF1Q92900 1129 aaKnown RBP eCLIP6.1□□□□□ -1.43
GPNMB-212ENST00000487890 ARID3CA6NKF2 412 aa6.09□□□□□ -1.43
GPNMB-212ENST00000487890 FCHSD2O94868 740 aa6.09□□□□□ -1.43
GPNMB-212ENST00000487890 PTGER2P43116 358 aa6.09□□□□□ -1.43
GPNMB-212ENST00000487890 TRIM26Q12899 539 aaPredicted RBP6.09□□□□□ -1.43
GPNMB-212ENST00000487890 HIC1Q14526 733 aa6.09□□□□□ -1.43
GPNMB-212ENST00000487890 DDX12PQ92771 950 aa6.09□□□□□ -1.43
GPNMB-212ENST00000487890 IRX5P78411 483 aaPredicted RBP6.08□□□□□ -1.44
GPNMB-212ENST00000487890 BOLA1Q9Y3E2 137 aa6.08□□□□□ -1.44
GPNMB-212ENST00000487890 APBB1O00213 710 aa6.07□□□□□ -1.44
GPNMB-212ENST00000487890 ONECUT3O60422 494 aaPredicted RBP6.07□□□□□ -1.44
GPNMB-212ENST00000487890 HRCP23327 699 aa6.07□□□□□ -1.44
GPNMB-212ENST00000487890 ATN1P54259 1190 aaPredicted RBP6.07□□□□□ -1.44
GPNMB-212ENST00000487890 FLIIQ13045 1269 aa6.07□□□□□ -1.44
GPNMB-212ENST00000487890 TMEM92Q6UXU6 159 aa6.07□□□□□ -1.44
GPNMB-212ENST00000487890 OXER1Q8TDS5 423 aa6.07□□□□□ -1.44
GPNMB-212ENST00000487890 MS4A1P11836 297 aa6.06□□□□□ -1.44
GPNMB-212ENST00000487890 TTLL12Q14166 644 aaPredicted RBP6.06□□□□□ -1.44
GPNMB-212ENST00000487890 REPIN1Q9BWE0 567 aaKnown RBP6.06□□□□□ -1.44
GPNMB-212ENST00000487890 OCEL1Q9H607 264 aa6.06□□□□□ -1.44
GPNMB-212ENST00000487890 GOPCQ9HD26 462 aa6.06□□□□□ -1.44
GPNMB-212ENST00000487890 PTGDRQ13258 359 aa6.05□□□□□ -1.44
GPNMB-212ENST00000487890 GIGYF2Q6Y7W6 1299 aaKnown RBP6.05□□□□□ -1.44
GPNMB-212ENST00000487890 G3V3G9 751 aa6.03□□□□□ -1.44
GPNMB-212ENST00000487890 ATMINO43313 823 aaPredicted RBP6.03□□□□□ -1.44
GPNMB-212ENST00000487890 EVI5O60447 810 aa6.03□□□□□ -1.44
GPNMB-212ENST00000487890 CLUAP1Q96AJ1 413 aa6.03□□□□□ -1.44
GPNMB-212ENST00000487890 TBC1D12O60347 775 aa6.02□□□□□ -1.45
GPNMB-212ENST00000487890 PCMTD1Q96MG8 357 aaPredicted RBP6.02□□□□□ -1.45
GPNMB-212ENST00000487890 TMUB1Q9BVT8 246 aa6.02□□□□□ -1.45
GPNMB-212ENST00000487890 RB1CC1Q8TDY2 1594 aa6.01□□□□□ -1.45
GPNMB-212ENST00000487890 A6NJR5 290 aa6.01□□□□□ -1.45
GPNMB-212ENST00000487890 TRAK2O60296 914 aa6.01□□□□□ -1.45
GPNMB-212ENST00000487890 IER5LQ5T953 404 aa6.01□□□□□ -1.45
GPNMB-212ENST00000487890 NPDC1Q9NQX5 325 aaPredicted RBP6.01□□□□□ -1.45
GPNMB-212ENST00000487890 ASTLQ6HA08 431 aaPredicted RBP6□□□□□ -1.45
GPNMB-212ENST00000487890 CDHR5Q9HBB8 845 aa6□□□□□ -1.45
GPNMB-212ENST00000487890 EVX2Q03828 476 aa5.99□□□□□ -1.45
GPNMB-212ENST00000487890 SH3D19Q5HYK7 790 aa5.99□□□□□ -1.45
GPNMB-212ENST00000487890 L3MBTL3Q96JM7 780 aaPredicted RBP5.99□□□□□ -1.45
GPNMB-212ENST00000487890 PHOX2BQ99453 314 aa5.99□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms