RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 PDE4AP27815 886 aa13.05□□□□□ -0.32
USP48-209ENST00000487880 OTUD5Q96G74 571 aa13.04□□□□□ -0.32
USP48-209ENST00000487880 G3V3G9 751 aa13.03□□□□□ -0.32
USP48-209ENST00000487880 LARP6Q9BRS8 491 aaKnown RBP13.03□□□□□ -0.32
USP48-209ENST00000487880 WDR70Q9NW82 654 aa13.03□□□□□ -0.32
USP48-209ENST00000487880 GPHNQ9NQX3 736 aaPredicted RBP13.02□□□□□ -0.33
USP48-209ENST00000487880 DDX27Q96GQ7 796 aaKnown RBP12.99□□□□□ -0.33
USP48-209ENST00000487880 KIF3CO14782 793 aa12.98□□□□□ -0.33
USP48-209ENST00000487880 P3H3Q8IVL6 736 aa12.97□□□□□ -0.33
USP48-209ENST00000487880 BCANQ96GW7 911 aa12.97□□□□□ -0.33
USP48-209ENST00000487880 TMEM92Q6UXU6 159 aa12.96□□□□□ -0.33
USP48-209ENST00000487880 KCNV2Q8TDN2 545 aa12.96□□□□□ -0.33
USP48-209ENST00000487880 TMC2Q8TDI7 906 aa12.95□□□□□ -0.34
USP48-209ENST00000487880 C2orf72A6NCS6 295 aa12.93□□□□□ -0.34
USP48-209ENST00000487880 E2F4Q16254 413 aa12.93□□□□□ -0.34
USP48-209ENST00000487880 PPP1R15BQ5SWA1 713 aa12.93□□□□□ -0.34
USP48-209ENST00000487880 FOXK1P85037 733 aa12.92□□□□□ -0.34
USP48-209ENST00000487880 CAMK2BQ13554 666 aa12.92□□□□□ -0.34
USP48-209ENST00000487880 DSG2Q14126 1118 aa12.92□□□□□ -0.34
USP48-209ENST00000487880 POTEJP0CG39 1038 aa12.91□□□□□ -0.34
USP48-209ENST00000487880 C3orf67Q6ZVT6 689 aa12.91□□□□□ -0.34
USP48-209ENST00000487880 MAMSTRQ6ZN01 415 aa12.9□□□□□ -0.34
USP48-209ENST00000487880 ARHGEF1Q92888 912 aaKnown RBP12.86□□□□□ -0.35
USP48-209ENST00000487880 ARIH1Q9Y4X5 557 aaPredicted RBP12.86□□□□□ -0.35
USP48-209ENST00000487880 NBR1Q14596 966 aa12.84□□□□□ -0.35
USP48-209ENST00000487880 PLPP6Q8IY26 295 aa12.84□□□□□ -0.35
USP48-209ENST00000487880 SCUBE2Q9NQ36 999 aa12.84□□□□□ -0.35
USP48-209ENST00000487880 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.84□□□□□ -0.35
USP48-209ENST00000487880 EMILIN3Q9NT22 766 aa12.8□□□□□ -0.36
USP48-209ENST00000487880 POTEMA6NI47 508 aa12.73□□□□□ -0.37
USP48-209ENST00000487880 DPYSL4O14531 572 aa12.71□□□□□ -0.37
USP48-209ENST00000487880 OXER1Q8TDS5 423 aa12.71□□□□□ -0.37
USP48-209ENST00000487880 SLC34A2O95436 690 aa12.7□□□□□ -0.38
USP48-209ENST00000487880 POTEGQ6S5H5 508 aa12.7□□□□□ -0.38
USP48-209ENST00000487880 PDIA6Q15084 440 aa12.68□□□□□ -0.38
USP48-209ENST00000487880 SLAIN1Q8ND83 568 aa12.68□□□□□ -0.38
USP48-209ENST00000487880 SEMA3EO15041 775 aa12.67□□□□□ -0.38
USP48-209ENST00000487880 PTCD2Q8WV60 388 aaKnown RBP12.67□□□□□ -0.38
USP48-209ENST00000487880 PLSCR2Q9NRY7 297 aa12.67□□□□□ -0.38
USP48-209ENST00000487880 TESPA1A2RU30 521 aaPredicted RBP12.66□□□□□ -0.38
USP48-209ENST00000487880 SPDYE16A6NNV3 312 aaPredicted RBP12.65□□□□□ -0.38
USP48-209ENST00000487880 UPF1Q92900 1129 aaKnown RBP eCLIP12.65□□□□□ -0.38
USP48-209ENST00000487880 HOXB3P14651 431 aaPredicted RBP12.62□□□□□ -0.39
USP48-209ENST00000487880 MAP3K9P80192 1104 aa12.62□□□□□ -0.39
USP48-209ENST00000487880 FAM163AQ96GL9 167 aaPredicted RBP12.6□□□□□ -0.39
USP48-209ENST00000487880 LCE2DQ5TA82 110 aaPredicted RBP12.59□□□□□ -0.39
USP48-209ENST00000487880 TBC1D12O60347 775 aa12.57□□□□□ -0.4
USP48-209ENST00000487880 DOK7Q18PE1 504 aa12.57□□□□□ -0.4
USP48-209ENST00000487880 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.57□□□□□ -0.4
USP48-209ENST00000487880 PCDHGA4Q9Y5G9 962 aa12.57□□□□□ -0.4
USP48-209ENST00000487880 MLLT3P42568 568 aaPredicted RBP12.56□□□□□ -0.4
USP48-209ENST00000487880 EVI5O60447 810 aa12.55□□□□□ -0.4
USP48-209ENST00000487880 KDM4FA0A1W2PPD8 638 aa12.54□□□□□ -0.4
USP48-209ENST00000487880 PTGER2P43116 358 aa12.54□□□□□ -0.4
USP48-209ENST00000487880 ANO8Q9HCE9 1232 aaPredicted RBP12.54□□□□□ -0.4
USP48-209ENST00000487880 ZSWIM6Q9HCJ5 1215 aa12.53□□□□□ -0.4
USP48-209ENST00000487880 PCDH10Q9P2E7 1040 aa12.53□□□□□ -0.4
USP48-209ENST00000487880 TULP1O00294 542 aaPredicted RBP12.52□□□□□ -0.41
USP48-209ENST00000487880 SMYD5Q6GMV2 418 aa12.52□□□□□ -0.41
USP48-209ENST00000487880 LMOD2Q6P5Q4 547 aa12.52□□□□□ -0.41
USP48-209ENST00000487880 RIMBP2O15034 1052 aa12.49□□□□□ -0.41
USP48-209ENST00000487880 SNPHO15079 494 aa12.49□□□□□ -0.41
USP48-209ENST00000487880 GPR153Q6NV75 609 aa12.49□□□□□ -0.41
USP48-209ENST00000487880 ZNF316A6NFI3 1004 aaPredicted RBP12.48□□□□□ -0.41
USP48-209ENST00000487880 TPRNQ4KMQ1 711 aa12.48□□□□□ -0.41
USP48-209ENST00000487880 ARSIQ5FYB1 569 aa12.46□□□□□ -0.41
USP48-209ENST00000487880 KHSRPQ92945 711 aaKnown RBP eCLIP12.45□□□□□ -0.425e-16■■■■■ 32.3
USP48-209ENST00000487880 PRKCSHP14314 528 aaPredicted RBP12.44□□□□□ -0.42
USP48-209ENST00000487880 ZNF710Q8N1W2 664 aa12.44□□□□□ -0.42
USP48-209ENST00000487880 DDX12PQ92771 950 aa12.44□□□□□ -0.42
USP48-209ENST00000487880 GRXCR2A6NFK2 248 aa12.43□□□□□ -0.42
USP48-209ENST00000487880 OSBPP22059 807 aa12.43□□□□□ -0.42
USP48-209ENST00000487880 NUDT7P0C024 238 aa12.42□□□□□ -0.42
USP48-209ENST00000487880 RBM26Q5T8P6 1007 aaKnown RBP12.42□□□□□ -0.42
USP48-209ENST00000487880 PHF14O94880 888 aa12.39□□□□□ -0.43
USP48-209ENST00000487880 HOXB1P14653 301 aaPredicted RBP12.39□□□□□ -0.43
USP48-209ENST00000487880 PRIM1P49642 420 aaKnown RBP12.39□□□□□ -0.43
USP48-209ENST00000487880 ST18O60284 1047 aa12.38□□□□□ -0.43
USP48-209ENST00000487880 JPH4Q96JJ6 628 aa12.38□□□□□ -0.43
USP48-209ENST00000487880 PCDHGA10Q9Y5H3 936 aa12.37□□□□□ -0.43
USP48-209ENST00000487880 FOSBP53539 338 aa12.36□□□□□ -0.43
USP48-209ENST00000487880 ZC3H15Q8WU90 426 aaKnown RBP12.36□□□□□ -0.43
USP48-209ENST00000487880 EPAS1Q99814 870 aa12.36□□□□□ -0.43
USP48-209ENST00000487880 GPIHBP1Q8IV16 184 aa12.34□□□□□ -0.43
USP48-209ENST00000487880 GPR37O15354 613 aa12.33□□□□□ -0.44
USP48-209ENST00000487880 LHX6Q9UPM6 363 aa12.33□□□□□ -0.44
USP48-209ENST00000487880 EN1Q05925 392 aaPredicted RBP12.32□□□□□ -0.44
USP48-209ENST00000487880 TYW1BQ6NUM6 668 aa12.32□□□□□ -0.44
USP48-209ENST00000487880 FBXW7Q969H0 707 aa12.32□□□□□ -0.44
USP48-209ENST00000487880 CDAN1Q8IWY9 1227 aa12.3□□□□□ -0.44
USP48-209ENST00000487880 ZNF454Q8N9F8 522 aa12.3□□□□□ -0.44
USP48-209ENST00000487880 ZMYND10O75800 440 aa12.29□□□□□ -0.44
USP48-209ENST00000487880 NUTM2FA1L443 756 aa12.27□□□□□ -0.45
USP48-209ENST00000487880 PSDA5PKW4 1024 aaPredicted RBP12.27□□□□□ -0.45
USP48-209ENST00000487880 ZDHHC16Q969W1 377 aa12.27□□□□□ -0.45
USP48-209ENST00000487880 MAP3K7O43318 606 aa12.25□□□□□ -0.45
USP48-209ENST00000487880 RBM33Q96EV2 1170 aaKnown RBP12.25□□□□□ -0.45
USP48-209ENST00000487880 PTGDRQ13258 359 aa12.24□□□□□ -0.45
USP48-209ENST00000487880 PPP4R3BQ5MIZ7 849 aa12.24□□□□□ -0.45
USP48-209ENST00000487880 BARGINQ6ZT62 677 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms