RNA–Protein interactions for RNA: ENST00000487825.5

BRCA1-217, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 5

Gene BRCA1, Length 800 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-217ENST00000487825 PLSCR2Q9NRY7 297 aa12.31□□□□□ -0.44
BRCA1-217ENST00000487825 C2orf72A6NCS6 295 aa12.29□□□□□ -0.44
BRCA1-217ENST00000487825 HOXB3P14651 431 aaPredicted RBP12.28□□□□□ -0.44
BRCA1-217ENST00000487825 TMC2Q8TDI7 906 aa12.26□□□□□ -0.45
BRCA1-217ENST00000487825 BBXQ8WY36 941 aaPredicted RBP12.26□□□□□ -0.45
BRCA1-217ENST00000487825 KIF3CO14782 793 aa12.25□□□□□ -0.45
BRCA1-217ENST00000487825 DOK7Q18PE1 504 aa12.25□□□□□ -0.45
BRCA1-217ENST00000487825 MARVELD3Q96A59 401 aa12.25□□□□□ -0.45
BRCA1-217ENST00000487825 ZNF710Q8N1W2 664 aa12.24□□□□□ -0.45
BRCA1-217ENST00000487825 RIMBP2O15034 1052 aa12.19□□□□□ -0.46
BRCA1-217ENST00000487825 EMP3P54852 163 aa12.17□□□□□ -0.46
BRCA1-217ENST00000487825 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.17□□□□□ -0.46
BRCA1-217ENST00000487825 GPHNQ9NQX3 736 aaPredicted RBP12.15□□□□□ -0.46
BRCA1-217ENST00000487825 HOXB1P14653 301 aaPredicted RBP12.13□□□□□ -0.47
BRCA1-217ENST00000487825 SPRYD3Q8NCJ5 442 aa12.13□□□□□ -0.47
BRCA1-217ENST00000487825 DSG2Q14126 1118 aa12.12□□□□□ -0.47
BRCA1-217ENST00000487825 ARSIQ5FYB1 569 aa12.12□□□□□ -0.47
BRCA1-217ENST00000487825 PLPP6Q8IY26 295 aa12.12□□□□□ -0.47
BRCA1-217ENST00000487825 FOXK1P85037 733 aa12.11□□□□□ -0.47
BRCA1-217ENST00000487825 PAXIP1Q6ZW49 1069 aaPredicted RBP12.11□□□□□ -0.47
BRCA1-217ENST00000487825 CFAP44Q96MT7 982 aa12.11□□□□□ -0.47
BRCA1-217ENST00000487825 FAM205CA6NFA0 338 aa12.1□□□□□ -0.47
BRCA1-217ENST00000487825 GPR153Q6NV75 609 aa12.1□□□□□ -0.47
BRCA1-217ENST00000487825 KHSRPQ92945 711 aaKnown RBP eCLIP12.1□□□□□ -0.474e-9■■■□□ 15.2
BRCA1-217ENST00000487825 CRISPLD2Q9H0B8 497 aa12.1□□□□□ -0.47
BRCA1-217ENST00000487825 ZSWIM6Q9HCJ5 1215 aa12.1□□□□□ -0.47
BRCA1-217ENST00000487825 NCKAP5LQ9HCH0 1330 aa12.1□□□□□ -0.47
BRCA1-217ENST00000487825 PDE4AP27815 886 aa12.08□□□□□ -0.48
BRCA1-217ENST00000487825 CADPS2Q86UW7 1296 aa12.08□□□□□ -0.48
BRCA1-217ENST00000487825 CDAN1Q8IWY9 1227 aa12.08□□□□□ -0.48
BRCA1-217ENST00000487825 LARP6Q9BRS8 491 aaKnown RBP12.06□□□□□ -0.48
BRCA1-217ENST00000487825 POTEB3A0JP26 581 aa12.05□□□□□ -0.48
BRCA1-217ENST00000487825 SLC34A2O95436 690 aa12.05□□□□□ -0.48
BRCA1-217ENST00000487825 POTEBQ6S5H4 581 aa12.05□□□□□ -0.48
BRCA1-217ENST00000487825 HS3ST6Q96QI5 342 aa12.05□□□□□ -0.48
BRCA1-217ENST00000487825 PCDH10Q9P2E7 1040 aa12.05□□□□□ -0.48
BRCA1-217ENST00000487825 PPP1R15BQ5SWA1 713 aa12.04□□□□□ -0.48
BRCA1-217ENST00000487825 PCDHGA4Q9Y5G9 962 aa12.04□□□□□ -0.48
BRCA1-217ENST00000487825 ERBB3P21860 1342 aa12.04□□□□□ -0.48
BRCA1-217ENST00000487825 NUDT7P0C024 238 aa12.02□□□□□ -0.49
BRCA1-217ENST00000487825 DDX27Q96GQ7 796 aaKnown RBP12□□□□□ -0.49
BRCA1-217ENST00000487825 VARS2Q5ST30 1063 aaKnown RBP11.99□□□□□ -0.49
BRCA1-217ENST00000487825 PTCD2Q8WV60 388 aaKnown RBP11.98□□□□□ -0.49
BRCA1-217ENST00000487825 UPF1Q92900 1129 aaKnown RBP eCLIP11.98□□□□□ -0.49
BRCA1-217ENST00000487825 MFSD10Q14728 455 aa11.95□□□□□ -0.5
BRCA1-217ENST00000487825 ZNF316A6NFI3 1004 aaPredicted RBP11.94□□□□□ -0.5
BRCA1-217ENST00000487825 TBC1D12O60347 775 aa11.93□□□□□ -0.5
BRCA1-217ENST00000487825 LHX6Q9UPM6 363 aa11.93□□□□□ -0.5
BRCA1-217ENST00000487825 OXER1Q8TDS5 423 aa11.92□□□□□ -0.5
BRCA1-217ENST00000487825 KDM4FA0A1W2PPD8 638 aa11.88□□□□□ -0.51
BRCA1-217ENST00000487825 KRTAP3-3Q9BYR6 98 aa11.88□□□□□ -0.51
BRCA1-217ENST00000487825 KRTAP3-2Q9BYR7 98 aa11.88□□□□□ -0.51
BRCA1-217ENST00000487825 EMILIN3Q9NT22 766 aa11.87□□□□□ -0.51
BRCA1-217ENST00000487825 ZNF687Q8N1G0 1237 aa11.86□□□□□ -0.51
BRCA1-217ENST00000487825 TSHZ2Q9NRE2 1034 aa11.85□□□□□ -0.51
BRCA1-217ENST00000487825 MAP3K9P80192 1104 aa11.84□□□□□ -0.51
BRCA1-217ENST00000487825 NISCHQ9Y2I1 1504 aa11.84□□□□□ -0.51
BRCA1-217ENST00000487825 EVI5O60447 810 aa11.8□□□□□ -0.52
BRCA1-217ENST00000487825 WDR70Q9NW82 654 aa11.8□□□□□ -0.52
BRCA1-217ENST00000487825 CAMK2BQ13554 666 aa11.79□□□□□ -0.52
BRCA1-217ENST00000487825 PSDA5PKW4 1024 aaPredicted RBP11.77□□□□□ -0.53
BRCA1-217ENST00000487825 SPNS2Q8IVW8 549 aa11.77□□□□□ -0.53
BRCA1-217ENST00000487825 AXIN2Q9Y2T1 843 aa11.77□□□□□ -0.53
BRCA1-217ENST00000487825 DPYSL4O14531 572 aa11.76□□□□□ -0.53
BRCA1-217ENST00000487825 PLCB2Q00722 1185 aa11.76□□□□□ -0.53
BRCA1-217ENST00000487825 PPP4R3BQ5MIZ7 849 aa11.75□□□□□ -0.53
BRCA1-217ENST00000487825 ZNF454Q8N9F8 522 aa11.75□□□□□ -0.53
BRCA1-217ENST00000487825 ANO8Q9HCE9 1232 aaPredicted RBP11.75□□□□□ -0.53
BRCA1-217ENST00000487825 POTEEQ6S8J3 1075 aa11.74□□□□□ -0.53
BRCA1-217ENST00000487825 E2F4Q16254 413 aa11.73□□□□□ -0.53
BRCA1-217ENST00000487825 ANKRD13DQ6ZTN6 518 aa11.72□□□□□ -0.53
BRCA1-217ENST00000487825 PBX2P40425 430 aa11.71□□□□□ -0.53
BRCA1-217ENST00000487825 FOSBP53539 338 aa11.7□□□□□ -0.54
BRCA1-217ENST00000487825 LSM11P83369 360 aaKnown RBP eCLIP11.7□□□□□ -0.54
BRCA1-217ENST00000487825 ARHGAP33O14559 1287 aa11.68□□□□□ -0.54
BRCA1-217ENST00000487825 PSEN2P49810 448 aa11.68□□□□□ -0.54
BRCA1-217ENST00000487825 MMRN1Q13201 1228 aa11.67□□□□□ -0.54
BRCA1-217ENST00000487825 JPH4Q96JJ6 628 aa11.67□□□□□ -0.54
BRCA1-217ENST00000487825 KCNK17Q96T54 332 aa11.66□□□□□ -0.54
BRCA1-217ENST00000487825 DMRTA1Q5VZB9 504 aa11.64□□□□□ -0.55
BRCA1-217ENST00000487825 ZDHHC16Q969W1 377 aa11.64□□□□□ -0.55
BRCA1-217ENST00000487825 PCDHGA10Q9Y5H3 936 aa11.64□□□□□ -0.55
BRCA1-217ENST00000487825 HAP1P54257 671 aaPredicted RBP11.63□□□□□ -0.55
BRCA1-217ENST00000487825 DDX12PQ92771 950 aa11.63□□□□□ -0.55
BRCA1-217ENST00000487825 ADAM33Q9BZ11 813 aa11.62□□□□□ -0.55
BRCA1-217ENST00000487825 BCL2L12Q9HB09 334 aa11.62□□□□□ -0.55
BRCA1-217ENST00000487825 KCNH8Q96L42 1107 aa11.61□□□□□ -0.55
BRCA1-217ENST00000487825 PDIA6Q15084 440 aa11.6□□□□□ -0.55
BRCA1-217ENST00000487825 SPDYE16A6NNV3 312 aaPredicted RBP11.59□□□□□ -0.55
BRCA1-217ENST00000487825 PHF14O94880 888 aa11.59□□□□□ -0.55
BRCA1-217ENST00000487825 PTPREP23469 700 aa11.58□□□□□ -0.56
BRCA1-217ENST00000487825 TYW1BQ6NUM6 668 aa11.58□□□□□ -0.56
BRCA1-217ENST00000487825 ARIH1Q9Y4X5 557 aaPredicted RBP11.58□□□□□ -0.56
BRCA1-217ENST00000487825 PTGER2P43116 358 aa11.57□□□□□ -0.56
BRCA1-217ENST00000487825 ADGRD1Q6QNK2 874 aa11.57□□□□□ -0.56
BRCA1-217ENST00000487825 KCNV2Q8TDN2 545 aa11.56□□□□□ -0.56
BRCA1-217ENST00000487825 RBM33Q96EV2 1170 aaKnown RBP11.56□□□□□ -0.56
BRCA1-217ENST00000487825 MYT1LQ9UL68 1186 aa11.56□□□□□ -0.56
BRCA1-217ENST00000487825 FBXW7Q969H0 707 aa11.55□□□□□ -0.56
BRCA1-217ENST00000487825 EPAS1Q99814 870 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms