RNA–Protein interactions for RNA: ENST00000486810.5

COPS3-209, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 3

Gene COPS3, Length 938 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-209ENST00000486810 NCKAP5LQ9HCH0 1330 aa11.95□□□□□ -0.5
COPS3-209ENST00000486810 SCUBE2Q9NQ36 999 aa11.95□□□□□ -0.5
COPS3-209ENST00000486810 KIF3CO14782 793 aa11.94□□□□□ -0.5
COPS3-209ENST00000486810 CRISPLD2Q9H0B8 497 aa11.92□□□□□ -0.5
COPS3-209ENST00000486810 C2orf72A6NCS6 295 aa11.9□□□□□ -0.5
COPS3-209ENST00000486810 HAP1P54257 671 aaPredicted RBP11.9□□□□□ -0.5
COPS3-209ENST00000486810 SLAIN1Q8ND83 568 aa11.9□□□□□ -0.5
COPS3-209ENST00000486810 GPHNQ9NQX3 736 aaPredicted RBP11.87□□□□□ -0.51
COPS3-209ENST00000486810 PDE4AP27815 886 aa11.83□□□□□ -0.52
COPS3-209ENST00000486810 DSG2Q14126 1118 aa11.83□□□□□ -0.52
COPS3-209ENST00000486810 MFSD10Q14728 455 aa11.83□□□□□ -0.52
COPS3-209ENST00000486810 TMC2Q8TDI7 906 aa11.83□□□□□ -0.52
COPS3-209ENST00000486810 LARP6Q9BRS8 491 aaKnown RBP11.82□□□□□ -0.52
COPS3-209ENST00000486810 FOXK1P85037 733 aa11.81□□□□□ -0.52
COPS3-209ENST00000486810 KDM2AQ9Y2K7 1162 aa11.81□□□□□ -0.52
COPS3-209ENST00000486810 HOXB3P14651 431 aaPredicted RBP11.77□□□□□ -0.53
COPS3-209ENST00000486810 PPP1R15BQ5SWA1 713 aa11.77□□□□□ -0.53
COPS3-209ENST00000486810 PLPP6Q8IY26 295 aa11.77□□□□□ -0.53
COPS3-209ENST00000486810 DDX27Q96GQ7 796 aaKnown RBP11.77□□□□□ -0.53
COPS3-209ENST00000486810 VSIG10Q8N0Z9 540 aa11.71□□□□□ -0.53
COPS3-209ENST00000486810 CAMK2BQ13554 666 aa11.69□□□□□ -0.54
COPS3-209ENST00000486810 LCE2DQ5TA82 110 aaPredicted RBP11.68□□□□□ -0.54
COPS3-209ENST00000486810 EMILIN3Q9NT22 766 aa11.68□□□□□ -0.54
COPS3-209ENST00000486810 SLC24A1O60721 1099 aa11.67□□□□□ -0.54
COPS3-209ENST00000486810 SLC34A2O95436 690 aa11.66□□□□□ -0.54
COPS3-209ENST00000486810 WDR70Q9NW82 654 aa11.65□□□□□ -0.54
COPS3-209ENST00000486810 DOK7Q18PE1 504 aa11.64□□□□□ -0.55
COPS3-209ENST00000486810 SNPHO15079 494 aa11.63□□□□□ -0.55
COPS3-209ENST00000486810 OXER1Q8TDS5 423 aa11.63□□□□□ -0.55
COPS3-209ENST00000486810 PTCD2Q8WV60 388 aaKnown RBP11.63□□□□□ -0.55
COPS3-209ENST00000486810 ST18O60284 1047 aa11.62□□□□□ -0.55
COPS3-209ENST00000486810 E2F4Q16254 413 aa11.62□□□□□ -0.55
COPS3-209ENST00000486810 GPR153Q6NV75 609 aa11.61□□□□□ -0.55
COPS3-209ENST00000486810 KHSRPQ92945 711 aaKnown RBP eCLIP11.61□□□□□ -0.553e-8■■■■■ 29
COPS3-209ENST00000486810 KCNV2Q8TDN2 545 aa11.6□□□□□ -0.55
COPS3-209ENST00000486810 UPF1Q92900 1129 aaKnown RBP eCLIP11.6□□□□□ -0.55
COPS3-209ENST00000486810 FAM163AQ96GL9 167 aaPredicted RBP11.6□□□□□ -0.55
COPS3-209ENST00000486810 PCDHGA4Q9Y5G9 962 aa11.6□□□□□ -0.55
COPS3-209ENST00000486810 ARSIQ5FYB1 569 aa11.58□□□□□ -0.56
COPS3-209ENST00000486810 KDM4FA0A1W2PPD8 638 aa11.57□□□□□ -0.56
COPS3-209ENST00000486810 ZSWIM6Q9HCJ5 1215 aa11.57□□□□□ -0.56
COPS3-209ENST00000486810 HOXB1P14653 301 aaPredicted RBP11.56□□□□□ -0.56
COPS3-209ENST00000486810 ZNF710Q8N1W2 664 aa11.56□□□□□ -0.56
COPS3-209ENST00000486810 DPYSL4O14531 572 aa11.55□□□□□ -0.56
COPS3-209ENST00000486810 ARIH1Q9Y4X5 557 aaPredicted RBP11.55□□□□□ -0.56
COPS3-209ENST00000486810 RIMBP2O15034 1052 aa11.54□□□□□ -0.56
COPS3-209ENST00000486810 NUDT7P0C024 238 aa11.52□□□□□ -0.57
COPS3-209ENST00000486810 MAP3K9P80192 1104 aa11.5□□□□□ -0.57
COPS3-209ENST00000486810 ARHGEF1Q92888 912 aaKnown RBP11.49□□□□□ -0.57
COPS3-209ENST00000486810 MARVELD3Q96A59 401 aa11.49□□□□□ -0.57
COPS3-209ENST00000486810 TBC1D12O60347 775 aa11.48□□□□□ -0.57
COPS3-209ENST00000486810 EVI5O60447 810 aa11.48□□□□□ -0.57
COPS3-209ENST00000486810 P3H3Q8IVL6 736 aa11.47□□□□□ -0.57
COPS3-209ENST00000486810 PDIA6Q15084 440 aa11.46□□□□□ -0.57
COPS3-209ENST00000486810 ANO8Q9HCE9 1232 aaPredicted RBP11.46□□□□□ -0.57
COPS3-209ENST00000486810 POTEB3A0JP26 581 aa11.45□□□□□ -0.58
COPS3-209ENST00000486810 POTEBQ6S5H4 581 aa11.45□□□□□ -0.58
COPS3-209ENST00000486810 LHX6Q9UPM6 363 aa11.44□□□□□ -0.58
COPS3-209ENST00000486810 EMP3P54852 163 aa11.42□□□□□ -0.58
COPS3-209ENST00000486810 ZNF316A6NFI3 1004 aaPredicted RBP11.41□□□□□ -0.58
COPS3-209ENST00000486810 SPDYE16A6NNV3 312 aaPredicted RBP11.4□□□□□ -0.58
COPS3-209ENST00000486810 FAM205CA6NFA0 338 aa11.38□□□□□ -0.59
COPS3-209ENST00000486810 PTGER2P43116 358 aa11.38□□□□□ -0.59
COPS3-209ENST00000486810 SEMA3EO15041 775 aa11.37□□□□□ -0.59
COPS3-209ENST00000486810 ERBB3P21860 1342 aa11.36□□□□□ -0.59
COPS3-209ENST00000486810 POTEMA6NI47 508 aa11.36□□□□□ -0.59
COPS3-209ENST00000486810 MLLT3P42568 568 aaPredicted RBP11.36□□□□□ -0.59
COPS3-209ENST00000486810 VARS2Q5ST30 1063 aaKnown RBP11.36□□□□□ -0.59
COPS3-209ENST00000486810 POTEGQ6S5H5 508 aa11.36□□□□□ -0.59
COPS3-209ENST00000486810 HS3ST6Q96QI5 342 aa11.36□□□□□ -0.59
COPS3-209ENST00000486810 FOSBP53539 338 aa11.35□□□□□ -0.59
COPS3-209ENST00000486810 DDX12PQ92771 950 aa11.34□□□□□ -0.59
COPS3-209ENST00000486810 PCDHGA10Q9Y5H3 936 aa11.34□□□□□ -0.59
COPS3-209ENST00000486810 PRIM1P49642 420 aaKnown RBP11.32□□□□□ -0.6
COPS3-209ENST00000486810 JPH4Q96JJ6 628 aa11.32□□□□□ -0.6
COPS3-209ENST00000486810 TESPA1A2RU30 521 aaPredicted RBP11.31□□□□□ -0.6
COPS3-209ENST00000486810 ZNF454Q8N9F8 522 aa11.31□□□□□ -0.6
COPS3-209ENST00000486810 PHF14O94880 888 aa11.3□□□□□ -0.6
COPS3-209ENST00000486810 POTEEQ6S8J3 1075 aa11.3□□□□□ -0.6
COPS3-209ENST00000486810 GRXCR2A6NFK2 248 aa11.29□□□□□ -0.6
COPS3-209ENST00000486810 OSBPP22059 807 aa11.28□□□□□ -0.6
COPS3-209ENST00000486810 ZNF687Q8N1G0 1237 aa11.27□□□□□ -0.61
COPS3-209ENST00000486810 ADAM33Q9BZ11 813 aa11.27□□□□□ -0.61
COPS3-209ENST00000486810 PSDA5PKW4 1024 aaPredicted RBP11.26□□□□□ -0.61
COPS3-209ENST00000486810 PPP4R3BQ5MIZ7 849 aa11.26□□□□□ -0.61
COPS3-209ENST00000486810 NBR1Q14596 966 aa11.25□□□□□ -0.61
COPS3-209ENST00000486810 ZDHHC16Q969W1 377 aa11.25□□□□□ -0.61
COPS3-209ENST00000486810 TYW1BQ6NUM6 668 aa11.24□□□□□ -0.61
COPS3-209ENST00000486810 EPAS1Q99814 870 aa11.24□□□□□ -0.61
COPS3-209ENST00000486810 EN1Q05925 392 aaPredicted RBP11.22□□□□□ -0.61
COPS3-209ENST00000486810 BCL2L12Q9HB09 334 aa11.22□□□□□ -0.61
COPS3-209ENST00000486810 CDAN1Q8IWY9 1227 aa11.21□□□□□ -0.61
COPS3-209ENST00000486810 FBXW7Q969H0 707 aa11.21□□□□□ -0.61
COPS3-209ENST00000486810 RBM33Q96EV2 1170 aaKnown RBP11.21□□□□□ -0.61
COPS3-209ENST00000486810 KRTAP3-3Q9BYR6 98 aa11.21□□□□□ -0.61
COPS3-209ENST00000486810 KRTAP3-2Q9BYR7 98 aa11.21□□□□□ -0.61
COPS3-209ENST00000486810 AXIN2Q9Y2T1 843 aa11.21□□□□□ -0.61
COPS3-209ENST00000486810 PSEN2P49810 448 aa11.19□□□□□ -0.62
COPS3-209ENST00000486810 TSR1Q2NL82 804 aaKnown RBP11.19□□□□□ -0.62
COPS3-209ENST00000486810 C6orf132Q5T0Z8 1188 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms