RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 FRMPD1Q5SYB0 1578 aa23.32■■□□□ 1.32
USP4-212ENST00000486549 ADGRL1O94910 1474 aa23.32■■□□□ 1.32
USP4-212ENST00000486549 RAPGEF3O95398 923 aa23.32■■□□□ 1.32
USP4-212ENST00000486549 EFCAB2Q5VUJ9 269 aa23.32■■□□□ 1.32
USP4-212ENST00000486549 DENND4BO75064 1496 aaPredicted RBP23.3■■□□□ 1.32
USP4-212ENST00000486549 RICTORQ6R327 1708 aa23.3■■□□□ 1.32
USP4-212ENST00000486549 SUPT6HQ7KZ85 1726 aaKnown RBP23.28■■□□□ 1.32
USP4-212ENST00000486549 SCAPERQ9BY12 1400 aa23.27■■□□□ 1.32
USP4-212ENST00000486549 CCNB3Q8WWL7 1395 aa23.27■■□□□ 1.31
USP4-212ENST00000486549 GPATCH8Q9UKJ3 1502 aaKnown RBP23.26■■□□□ 1.31
USP4-212ENST00000486549 LRRC9Q6ZRR7 1453 aa23.25■■□□□ 1.31
USP4-212ENST00000486549 MAP3K1Q13233 1512 aa23.25■■□□□ 1.31
USP4-212ENST00000486549 ITSN2Q9NZM3 1697 aa23.23■■□□□ 1.31
USP4-212ENST00000486549 APLP2Q06481 763 aa23.23■■□□□ 1.31
USP4-212ENST00000486549 ZNF777Q9ULD5 760 aaPredicted RBP23.22■■□□□ 1.31
USP4-212ENST00000486549 POGZQ7Z3K3 1410 aa23.22■■□□□ 1.31
USP4-212ENST00000486549 NCOA2Q15596 1464 aa23.22■■□□□ 1.31
USP4-212ENST00000486549 ABCC1P33527 1531 aa23.21■■□□□ 1.31
USP4-212ENST00000486549 SAMD9LQ8IVG5 1584 aa23.2■■□□□ 1.3
USP4-212ENST00000486549 KANK4Q5T7N3 995 aaPredicted RBP23.2■■□□□ 1.3
USP4-212ENST00000486549 ZMYM4Q5VZL5 1548 aa23.18■■□□□ 1.3
USP4-212ENST00000486549 CFDP1Q9UEE9 299 aaPredicted RBP23.18■■□□□ 1.3
USP4-212ENST00000486549 ARHGEF40Q8TER5 1519 aa23.16■■□□□ 1.3
USP4-212ENST00000486549 ARHGEF12Q9NZN5 1544 aa23.15■■□□□ 1.3
USP4-212ENST00000486549 ZNF518AQ6AHZ1 1483 aa23.15■■□□□ 1.3
USP4-212ENST00000486549 ZFYVE16Q7Z3T8 1539 aa23.14■■□□□ 1.3
USP4-212ENST00000486549 SYCP2Q9BX26 1530 aa23.14■■□□□ 1.3
USP4-212ENST00000486549 MAGI2Q86UL8 1455 aa23.12■■□□□ 1.29
USP4-212ENST00000486549 AFAP1Q8N556 730 aa23.12■■□□□ 1.29
USP4-212ENST00000486549 TRAPPC8Q9Y2L5 1435 aa23.12■■□□□ 1.29
USP4-212ENST00000486549 KDM5CP41229 1560 aa23.11■■□□□ 1.29
USP4-212ENST00000486549 YEATS2Q9ULM3 1422 aa23.11■■□□□ 1.29
USP4-212ENST00000486549 ARID4BQ4LE39 1312 aaPredicted RBP23.1■■□□□ 1.29
USP4-212ENST00000486549 HECW2Q9P2P5 1572 aa23.1■■□□□ 1.29
USP4-212ENST00000486549 MYT1LQ9UL68 1186 aa23.09■■□□□ 1.29
USP4-212ENST00000486549 PLEKHH2Q8IVE3 1493 aa23.09■■□□□ 1.29
USP4-212ENST00000486549 ZNF644Q9H582 1327 aaPredicted RBP23.08■■□□□ 1.28
USP4-212ENST00000486549 HNRNPMP52272 730 aaKnown RBP eCLIP23.07■■□□□ 1.28
USP4-212ENST00000486549 KIAA1107Q9UPP5 1409 aa23.05■■□□□ 1.28
USP4-212ENST00000486549 CAMSAP2Q08AD1 1489 aa23.05■■□□□ 1.28
USP4-212ENST00000486549 MYOM3Q5VTT5 1437 aa23.02■■□□□ 1.28
USP4-212ENST00000486549 ABCA6Q8N139 1617 aa23.02■■□□□ 1.28
USP4-212ENST00000486549 SIGLEC1Q9BZZ2 1709 aa23.02■■□□□ 1.28
USP4-212ENST00000486549 MLH3Q9UHC1 1453 aa23.01■■□□□ 1.27
USP4-212ENST00000486549 KIDINS220Q9ULH0 1771 aa23.01■■□□□ 1.27
USP4-212ENST00000486549 DIP2CQ9Y2E4 1556 aa23.01■■□□□ 1.27
USP4-212ENST00000486549 ATP10AO60312 1499 aa22.99■■□□□ 1.27
USP4-212ENST00000486549 ADAMTSL3P82987 1691 aa22.98■■□□□ 1.27
USP4-212ENST00000486549 C9orf84Q5VXU9 1444 aa22.98■■□□□ 1.27
USP4-212ENST00000486549 MBD5Q9P267 1494 aa22.98■■□□□ 1.27
USP4-212ENST00000486549 BCORL1Q5H9F3 1711 aa22.97■■□□□ 1.27
USP4-212ENST00000486549 SPAG9O60271 1321 aaKnown RBP22.97■■□□□ 1.27
USP4-212ENST00000486549 ATP7AQ04656 1500 aa22.96■■□□□ 1.27
USP4-212ENST00000486549 INO80Q9ULG1 1556 aaPredicted RBP22.96■■□□□ 1.27
USP4-212ENST00000486549 PTPRMP28827 1452 aa22.95■■□□□ 1.26
USP4-212ENST00000486549 MIA2Q96PC5 1412 aa22.95■■□□□ 1.26
USP4-212ENST00000486549 CCDC141Q6ZP82 1450 aa22.94■■□□□ 1.26
USP4-212ENST00000486549 PTPN23Q9H3S7 1636 aa22.92■■□□□ 1.26
USP4-212ENST00000486549 ARHGEF5Q12774 1597 aa22.92■■□□□ 1.26
USP4-212ENST00000486549 PPARGC1BQ86YN6 1023 aaKnown RBP22.91■■□□□ 1.26
USP4-212ENST00000486549 MADDQ8WXG6 1647 aa22.9■■□□□ 1.26
USP4-212ENST00000486549 MLECQ14165 292 aa22.9■■□□□ 1.26
USP4-212ENST00000486549 FGD6Q6ZV73 1430 aa22.9■■□□□ 1.26
USP4-212ENST00000486549 REREQ9P2R6 1566 aa22.89■■□□□ 1.26
USP4-212ENST00000486549 RIMS1Q86UR5 1692 aaKnown RBP22.85■■□□□ 1.25
USP4-212ENST00000486549 ADGBQ8N7X0 1667 aa22.85■■□□□ 1.25
USP4-212ENST00000486549 RSPH4AQ5TD94 716 aa22.85■■□□□ 1.25
USP4-212ENST00000486549 FER1L4A9Z1Z3 1794 aa22.84■■□□□ 1.25
USP4-212ENST00000486549 RTEL1-TNFRSF6BF6WH68 1400 aa22.83■■□□□ 1.25
USP4-212ENST00000486549 TCOF1Q13428 1488 aaKnown RBP22.83■■□□□ 1.25
USP4-212ENST00000486549 A2MP01023 1474 aa22.82■■□□□ 1.24
USP4-212ENST00000486549 TSPY4P0CV99 314 aa22.82■■□□□ 1.24
USP4-212ENST00000486549 TSPY10P0CW01 314 aa22.82■■□□□ 1.24
USP4-212ENST00000486549 AGLP35573 1532 aa22.82■■□□□ 1.24
USP4-212ENST00000486549 CROCC2H7BZ55 1655 aa22.81■■□□□ 1.24
USP4-212ENST00000486549 PLXNC1O60486 1568 aa22.8■■□□□ 1.24
USP4-212ENST00000486549 MAST1Q9Y2H9 1570 aa22.8■■□□□ 1.24
USP4-212ENST00000486549 DNMT1P26358 1616 aaKnown RBP22.79■■□□□ 1.24
USP4-212ENST00000486549 FAM50AQ14320 339 aaKnown RBP22.77■■□□□ 1.24
USP4-212ENST00000486549 ABCC5O15440 1437 aa22.75■■□□□ 1.23
USP4-212ENST00000486549 DAPK1P53355 1430 aa22.75■■□□□ 1.23
USP4-212ENST00000486549 ESF1Q9H501 851 aaKnown RBP22.75■■□□□ 1.23
USP4-212ENST00000486549 PLPPR3Q6T4P5 718 aa22.74■■□□□ 1.23
USP4-212ENST00000486549 SHANK2Q9UPX8 1470 aa22.73■■□□□ 1.23
USP4-212ENST00000486549 DHX29Q7Z478 1369 aaKnown RBP22.72■■□□□ 1.23
USP4-212ENST00000486549 GGT6Q6P531 493 aa22.67■■□□□ 1.22
USP4-212ENST00000486549 CHIC2Q9UKJ5 165 aa22.67■■□□□ 1.22
USP4-212ENST00000486549 LMTK3Q96Q04 1460 aa22.66■■□□□ 1.22
USP4-212ENST00000486549 CNTLNQ9NXG0 1405 aa22.65■■□□□ 1.22
USP4-212ENST00000486549 CLTCQ00610 1675 aaKnown RBP22.65■■□□□ 1.22
USP4-212ENST00000486549 KIF3BO15066 747 aa22.64■■□□□ 1.21
USP4-212ENST00000486549 KIF15Q9NS87 1388 aa22.63■■□□□ 1.21
USP4-212ENST00000486549 DUOX2Q9NRD8 1548 aa22.63■■□□□ 1.21
USP4-212ENST00000486549 RRP7BPQ9NSQ0 103 aa22.63■■□□□ 1.21
USP4-212ENST00000486549 C3P01024 1663 aa22.62■■□□□ 1.21
USP4-212ENST00000486549 CEBPAP49715 358 aaPredicted RBP22.62■■□□□ 1.21
USP4-212ENST00000486549 EIF2AK4Q9P2K8 1649 aaKnown RBP22.61■■□□□ 1.21
USP4-212ENST00000486549 ANKRD30AQ9BXX3 1397 aa22.61■■□□□ 1.21
USP4-212ENST00000486549 MROH2AA6NES4 1674 aa22.59■■□□□ 1.21
USP4-212ENST00000486549 ITGAEP38570 1179 aa22.59■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 209 ms