RNA–Protein interactions for RNA: ENST00000481019.5

PTPRF-213, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 459 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-213ENST00000481019 EHBP1L1Q8N3D4 1523 aa19.42■□□□□ 0.7
PTPRF-213ENST00000481019 GPATCH8Q9UKJ3 1502 aaKnown RBP19.41■□□□□ 0.7
PTPRF-213ENST00000481019 DENND4BO75064 1496 aaPredicted RBP19.41■□□□□ 0.7
PTPRF-213ENST00000481019 ADGRL1O94910 1474 aa19.41■□□□□ 0.7
PTPRF-213ENST00000481019 EFCAB2Q5VUJ9 269 aa19.4■□□□□ 0.7
PTPRF-213ENST00000481019 SCAPERQ9BY12 1400 aa19.4■□□□□ 0.7
PTPRF-213ENST00000481019 KANK4Q5T7N3 995 aaPredicted RBP19.39■□□□□ 0.69
PTPRF-213ENST00000481019 ARHGEF12Q9NZN5 1544 aa19.38■□□□□ 0.69
PTPRF-213ENST00000481019 LRRC9Q6ZRR7 1453 aa19.36■□□□□ 0.69
PTPRF-213ENST00000481019 POGZQ7Z3K3 1410 aa19.36■□□□□ 0.69
PTPRF-213ENST00000481019 SAMD9LQ8IVG5 1584 aa19.35■□□□□ 0.69
PTPRF-213ENST00000481019 MAP3K1Q13233 1512 aa19.35■□□□□ 0.69
PTPRF-213ENST00000481019 NCOA2Q15596 1464 aa19.35■□□□□ 0.69
PTPRF-213ENST00000481019 CCNB3Q8WWL7 1395 aa19.34■□□□□ 0.69
PTPRF-213ENST00000481019 KDM4FA0A1W2PPD8 638 aa19.34■□□□□ 0.69
PTPRF-213ENST00000481019 ABCC1P33527 1531 aa19.34■□□□□ 0.69
PTPRF-213ENST00000481019 ZMYM4Q5VZL5 1548 aa19.33■□□□□ 0.68
PTPRF-213ENST00000481019 SUPT6HQ7KZ85 1726 aaKnown RBP19.32■□□□□ 0.68
PTPRF-213ENST00000481019 YEATS2Q9ULM3 1422 aa19.32■□□□□ 0.68
PTPRF-213ENST00000481019 ITSN2Q9NZM3 1697 aa19.31■□□□□ 0.68
PTPRF-213ENST00000481019 AFAP1Q8N556 730 aa19.31■□□□□ 0.68
PTPRF-213ENST00000481019 ZNF777Q9ULD5 760 aaPredicted RBP19.31■□□□□ 0.68
PTPRF-213ENST00000481019 TRAPPC8Q9Y2L5 1435 aa19.31■□□□□ 0.68
PTPRF-213ENST00000481019 ZNF644Q9H582 1327 aaPredicted RBP19.29■□□□□ 0.68
PTPRF-213ENST00000481019 CFDP1Q9UEE9 299 aaPredicted RBP19.29■□□□□ 0.68
PTPRF-213ENST00000481019 ARHGEF40Q8TER5 1519 aa19.29■□□□□ 0.68
PTPRF-213ENST00000481019 SIGLEC1Q9BZZ2 1709 aa19.28■□□□□ 0.68
PTPRF-213ENST00000481019 KDM5CP41229 1560 aa19.27■□□□□ 0.68
PTPRF-213ENST00000481019 SYCP2Q9BX26 1530 aa19.27■□□□□ 0.68
PTPRF-213ENST00000481019 ZFYVE16Q7Z3T8 1539 aa19.26■□□□□ 0.67
PTPRF-213ENST00000481019 HNRNPMP52272 730 aaKnown RBP eCLIP19.26■□□□□ 0.674e-6■■■■□ 24.6
PTPRF-213ENST00000481019 ZNF518AQ6AHZ1 1483 aa19.26■□□□□ 0.67
PTPRF-213ENST00000481019 MAGI2Q86UL8 1455 aa19.22■□□□□ 0.67
PTPRF-213ENST00000481019 HECW2Q9P2P5 1572 aa19.21■□□□□ 0.67
PTPRF-213ENST00000481019 KIAA1107Q9UPP5 1409 aa19.21■□□□□ 0.67
PTPRF-213ENST00000481019 MBD5Q9P267 1494 aa19.2■□□□□ 0.66
PTPRF-213ENST00000481019 ABCA6Q8N139 1617 aa19.19■□□□□ 0.66
PTPRF-213ENST00000481019 APLP2Q06481 763 aa19.19■□□□□ 0.66
PTPRF-213ENST00000481019 CAMSAP2Q08AD1 1489 aa19.19■□□□□ 0.66
PTPRF-213ENST00000481019 MLH3Q9UHC1 1453 aa19.19■□□□□ 0.66
PTPRF-213ENST00000481019 KIDINS220Q9ULH0 1771 aa19.19■□□□□ 0.66
PTPRF-213ENST00000481019 DIP2CQ9Y2E4 1556 aa19.19■□□□□ 0.66
PTPRF-213ENST00000481019 PLEKHH2Q8IVE3 1493 aa19.18■□□□□ 0.66
PTPRF-213ENST00000481019 ATP10AO60312 1499 aa19.16■□□□□ 0.66
PTPRF-213ENST00000481019 AEBP2Q6ZN18 517 aaPredicted RBP19.16■□□□□ 0.66
PTPRF-213ENST00000481019 MYOM3Q5VTT5 1437 aa19.16■□□□□ 0.66
PTPRF-213ENST00000481019 BCORL1Q5H9F3 1711 aa19.15■□□□□ 0.66
PTPRF-213ENST00000481019 ADAMTSL3P82987 1691 aa19.14■□□□□ 0.66
PTPRF-213ENST00000481019 ARID4BQ4LE39 1312 aaPredicted RBP19.14■□□□□ 0.65
PTPRF-213ENST00000481019 MYT1LQ9UL68 1186 aa19.13■□□□□ 0.65
PTPRF-213ENST00000481019 C9orf84Q5VXU9 1444 aa19.13■□□□□ 0.65
PTPRF-213ENST00000481019 INO80Q9ULG1 1556 aaPredicted RBP19.13■□□□□ 0.65
PTPRF-213ENST00000481019 SPAG9O60271 1321 aaKnown RBP19.12■□□□□ 0.65
PTPRF-213ENST00000481019 PPARGC1BQ86YN6 1023 aaKnown RBP19.11■□□□□ 0.65
PTPRF-213ENST00000481019 ATP7AQ04656 1500 aa19.1■□□□□ 0.65
PTPRF-213ENST00000481019 MIA2Q96PC5 1412 aa19.09■□□□□ 0.65
PTPRF-213ENST00000481019 MADDQ8WXG6 1647 aa19.09■□□□□ 0.65
PTPRF-213ENST00000481019 REREQ9P2R6 1566 aa19.08■□□□□ 0.65
PTPRF-213ENST00000481019 MLECQ14165 292 aa19.08■□□□□ 0.64
PTPRF-213ENST00000481019 CCDC141Q6ZP82 1450 aa19.08■□□□□ 0.64
PTPRF-213ENST00000481019 ARHGEF5Q12774 1597 aa19.07■□□□□ 0.64
PTPRF-213ENST00000481019 FGD6Q6ZV73 1430 aa19.07■□□□□ 0.64
PTPRF-213ENST00000481019 PTPN23Q9H3S7 1636 aa19.07■□□□□ 0.64
PTPRF-213ENST00000481019 RIMS1Q86UR5 1692 aaKnown RBP19.03■□□□□ 0.64
PTPRF-213ENST00000481019 TCOF1Q13428 1488 aaKnown RBP19.03■□□□□ 0.64
PTPRF-213ENST00000481019 PLXNC1O60486 1568 aa19.02■□□□□ 0.64
PTPRF-213ENST00000481019 ADGBQ8N7X0 1667 aa19.02■□□□□ 0.64
PTPRF-213ENST00000481019 RTEL1-TNFRSF6BF6WH68 1400 aa19.02■□□□□ 0.64
PTPRF-213ENST00000481019 AGLP35573 1532 aa19.02■□□□□ 0.64
PTPRF-213ENST00000481019 PTPRMP28827 1452 aa19.02■□□□□ 0.63
PTPRF-213ENST00000481019 A2MP01023 1474 aa19.01■□□□□ 0.63
PTPRF-213ENST00000481019 ABCC5O15440 1437 aa19■□□□□ 0.63
PTPRF-213ENST00000481019 FER1L4A9Z1Z3 1794 aa18.99■□□□□ 0.63
PTPRF-213ENST00000481019 MAST1Q9Y2H9 1570 aa18.98■□□□□ 0.63
PTPRF-213ENST00000481019 RSPH4AQ5TD94 716 aa18.98■□□□□ 0.63
PTPRF-213ENST00000481019 CROCC2H7BZ55 1655 aa18.97■□□□□ 0.63
PTPRF-213ENST00000481019 DNMT1P26358 1616 aaKnown RBP18.96■□□□□ 0.63
PTPRF-213ENST00000481019 DAPK1P53355 1430 aa18.95■□□□□ 0.62
PTPRF-213ENST00000481019 TSPY4P0CV99 314 aa18.94■□□□□ 0.62
PTPRF-213ENST00000481019 TSPY10P0CW01 314 aa18.94■□□□□ 0.62
PTPRF-213ENST00000481019 DHX29Q7Z478 1369 aaKnown RBP18.93■□□□□ 0.62
PTPRF-213ENST00000481019 PLPPR3Q6T4P5 718 aa18.93■□□□□ 0.62
PTPRF-213ENST00000481019 FAM50AQ14320 339 aaKnown RBP18.92■□□□□ 0.62
PTPRF-213ENST00000481019 CEBPAP49715 358 aaPredicted RBP18.91■□□□□ 0.62
PTPRF-213ENST00000481019 SHANK2Q9UPX8 1470 aa18.9■□□□□ 0.62
PTPRF-213ENST00000481019 CHIC2Q9UKJ5 165 aa18.89■□□□□ 0.61
PTPRF-213ENST00000481019 PTPRKQ15262 1439 aa18.89■□□□□ 0.61
PTPRF-213ENST00000481019 GGT6Q6P531 493 aa18.87■□□□□ 0.61
PTPRF-213ENST00000481019 KIF3BO15066 747 aa18.86■□□□□ 0.61
PTPRF-213ENST00000481019 C3P01024 1663 aa18.85■□□□□ 0.61
PTPRF-213ENST00000481019 CLTCQ00610 1675 aaKnown RBP18.85■□□□□ 0.61
PTPRF-213ENST00000481019 RRP7BPQ9NSQ0 103 aa18.85■□□□□ 0.61
PTPRF-213ENST00000481019 KIF15Q9NS87 1388 aa18.84■□□□□ 0.61
PTPRF-213ENST00000481019 DUOX2Q9NRD8 1548 aa18.83■□□□□ 0.6
PTPRF-213ENST00000481019 NCOA1Q15788 1441 aa18.82■□□□□ 0.6
PTPRF-213ENST00000481019 MROH1Q8NDA8 1641 aa18.82■□□□□ 0.6
PTPRF-213ENST00000481019 ADGRL2O95490 1459 aa18.81■□□□□ 0.6
PTPRF-213ENST00000481019 RNF17Q9BXT8 1623 aaKnown RBP18.81■□□□□ 0.6
PTPRF-213ENST00000481019 MROH2AA6NES4 1674 aa18.8■□□□□ 0.6
PTPRF-213ENST00000481019 EIF2AK4Q9P2K8 1649 aaKnown RBP18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms