RNA–Protein interactions for RNA: ENST00000480658.5

CCM2-213, Transcript of CCM2 scaffold protein, humanhuman

TSL 2

Gene CCM2, Length 1,136 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-213ENST00000480658 ZFYVE16Q7Z3T8 1539 aa18.44■□□□□ 0.54
CCM2-213ENST00000480658 LRRIQ1Q96JM4 1722 aa18.44■□□□□ 0.54
CCM2-213ENST00000480658 ZNF518AQ6AHZ1 1483 aa18.44■□□□□ 0.54
CCM2-213ENST00000480658 SCAPERQ9BY12 1400 aa18.42■□□□□ 0.54
CCM2-213ENST00000480658 PREX2Q70Z35 1606 aa18.41■□□□□ 0.54
CCM2-213ENST00000480658 BCORL1Q5H9F3 1711 aa18.39■□□□□ 0.53
CCM2-213ENST00000480658 ADAMTSL3P82987 1691 aa18.38■□□□□ 0.53
CCM2-213ENST00000480658 ARID4BQ4LE39 1312 aaPredicted RBP18.38■□□□□ 0.53
CCM2-213ENST00000480658 KDM5CP41229 1560 aa18.36■□□□□ 0.53
CCM2-213ENST00000480658 CEP162Q5TB80 1403 aa18.36■□□□□ 0.53
CCM2-213ENST00000480658 C9orf84Q5VXU9 1444 aa18.34■□□□□ 0.53
CCM2-213ENST00000480658 HECW2Q9P2P5 1572 aa18.34■□□□□ 0.53
CCM2-213ENST00000480658 ABCC1P33527 1531 aa18.33■□□□□ 0.53
CCM2-213ENST00000480658 CDC42BPBQ9Y5S2 1711 aa18.33■□□□□ 0.52
CCM2-213ENST00000480658 ATP10AO60312 1499 aa18.33■□□□□ 0.52
CCM2-213ENST00000480658 PTPRMP28827 1452 aa18.33■□□□□ 0.52
CCM2-213ENST00000480658 MTUS2Q5JR59 1369 aa18.32■□□□□ 0.52
CCM2-213ENST00000480658 PLEKHH2Q8IVE3 1493 aa18.32■□□□□ 0.52
CCM2-213ENST00000480658 EHBP1L1Q8N3D4 1523 aa18.31■□□□□ 0.52
CCM2-213ENST00000480658 REREQ9P2R6 1566 aa18.3■□□□□ 0.52
CCM2-213ENST00000480658 CDC42BPAQ5VT25 1732 aa18.3■□□□□ 0.52
CCM2-213ENST00000480658 MLH3Q9UHC1 1453 aa18.3■□□□□ 0.52
CCM2-213ENST00000480658 YEATS2Q9ULM3 1422 aa18.3■□□□□ 0.52
CCM2-213ENST00000480658 MADDQ8WXG6 1647 aa18.3■□□□□ 0.52
CCM2-213ENST00000480658 ITSN2Q9NZM3 1697 aa18.28■□□□□ 0.52
CCM2-213ENST00000480658 CCNB3Q8WWL7 1395 aa18.27■□□□□ 0.51
CCM2-213ENST00000480658 KIAA1107Q9UPP5 1409 aa18.25■□□□□ 0.51
CCM2-213ENST00000480658 GPATCH8Q9UKJ3 1502 aaKnown RBP18.25■□□□□ 0.51
CCM2-213ENST00000480658 MYT1LQ9UL68 1186 aa18.24■□□□□ 0.51
CCM2-213ENST00000480658 RIMS1Q86UR5 1692 aaKnown RBP18.23■□□□□ 0.51
CCM2-213ENST00000480658 FER1L4A9Z1Z3 1794 aa18.22■□□□□ 0.51
CCM2-213ENST00000480658 DIP2CQ9Y2E4 1556 aa18.22■□□□□ 0.51
CCM2-213ENST00000480658 CFDP1Q9UEE9 299 aaPredicted RBP18.22■□□□□ 0.51
CCM2-213ENST00000480658 ARHGEF12Q9NZN5 1544 aa18.22■□□□□ 0.51
CCM2-213ENST00000480658 SAMD9LQ8IVG5 1584 aa18.21■□□□□ 0.51
CCM2-213ENST00000480658 AFAP1Q8N556 730 aa18.21■□□□□ 0.51
CCM2-213ENST00000480658 AGLP35573 1532 aa18.21■□□□□ 0.51
CCM2-213ENST00000480658 VPS8Q8N3P4 1428 aa18.21■□□□□ 0.51
CCM2-213ENST00000480658 SYCP2Q9BX26 1530 aa18.19■□□□□ 0.5
CCM2-213ENST00000480658 SUPT6HQ7KZ85 1726 aaKnown RBP18.19■□□□□ 0.5
CCM2-213ENST00000480658 ABCA6Q8N139 1617 aa18.19■□□□□ 0.5
CCM2-213ENST00000480658 TRAPPC8Q9Y2L5 1435 aa18.18■□□□□ 0.5
CCM2-213ENST00000480658 TIAM1Q13009 1591 aa18.17■□□□□ 0.5
CCM2-213ENST00000480658 SIGLEC1Q9BZZ2 1709 aa18.17■□□□□ 0.5
CCM2-213ENST00000480658 MAP3K1Q13233 1512 aa18.17■□□□□ 0.5
CCM2-213ENST00000480658 ZNF777Q9ULD5 760 aaPredicted RBP18.16■□□□□ 0.5
CCM2-213ENST00000480658 SPAG9O60271 1321 aaKnown RBP18.15■□□□□ 0.5
CCM2-213ENST00000480658 KIDINS220Q9ULH0 1771 aa18.14■□□□□ 0.5
CCM2-213ENST00000480658 ESF1Q9H501 851 aaKnown RBP18.14■□□□□ 0.49
CCM2-213ENST00000480658 CNTLNQ9NXG0 1405 aa18.14■□□□□ 0.49
CCM2-213ENST00000480658 ATP7AQ04656 1500 aa18.13■□□□□ 0.49
CCM2-213ENST00000480658 INO80Q9ULG1 1556 aaPredicted RBP18.13■□□□□ 0.49
CCM2-213ENST00000480658 MLECQ14165 292 aa18.12■□□□□ 0.49
CCM2-213ENST00000480658 RSPH4AQ5TD94 716 aa18.12■□□□□ 0.49
CCM2-213ENST00000480658 LMTK3Q96Q04 1460 aa18.12■□□□□ 0.49
CCM2-213ENST00000480658 NCOA2Q15596 1464 aa18.11■□□□□ 0.49
CCM2-213ENST00000480658 LRRC9Q6ZRR7 1453 aa18.09■□□□□ 0.49
CCM2-213ENST00000480658 RTEL1-TNFRSF6BF6WH68 1400 aa18.09■□□□□ 0.49
CCM2-213ENST00000480658 ADGBQ8N7X0 1667 aa18.09■□□□□ 0.49
CCM2-213ENST00000480658 PREX1Q8TCU6 1659 aa18.09■□□□□ 0.49
CCM2-213ENST00000480658 PLXNC1O60486 1568 aa18.08■□□□□ 0.48
CCM2-213ENST00000480658 CCDC141Q6ZP82 1450 aa18.07■□□□□ 0.48
CCM2-213ENST00000480658 HNRNPMP52272 730 aaKnown RBP eCLIP18.06■□□□□ 0.482e-6■■■□□ 15.7
CCM2-213ENST00000480658 A2MP01023 1474 aa18.06■□□□□ 0.48
CCM2-213ENST00000480658 APLP2Q06481 763 aa18.05■□□□□ 0.48
CCM2-213ENST00000480658 MBD5Q9P267 1494 aa18.05■□□□□ 0.48
CCM2-213ENST00000480658 MROH2AA6NES4 1674 aa18.05■□□□□ 0.48
CCM2-213ENST00000480658 CAMSAP2Q08AD1 1489 aa18.04■□□□□ 0.48
CCM2-213ENST00000480658 LOC105371045A0A1W2PR82 267 aa18.04■□□□□ 0.48
CCM2-213ENST00000480658 PPP6R1Q9UPN7 881 aa18.04■□□□□ 0.48
CCM2-213ENST00000480658 UHRF1BP1Q6BDS2 1440 aa18.03■□□□□ 0.48
CCM2-213ENST00000480658 ARHGEF5Q12774 1597 aa18.03■□□□□ 0.48
CCM2-213ENST00000480658 FAM135AQ9P2D6 1515 aa18.03■□□□□ 0.48
CCM2-213ENST00000480658 MIA2Q96PC5 1412 aa18.02■□□□□ 0.48
CCM2-213ENST00000480658 C3P01024 1663 aa17.99■□□□□ 0.47
CCM2-213ENST00000480658 NPATQ14207 1427 aa17.99■□□□□ 0.47
CCM2-213ENST00000480658 MYOM3Q5VTT5 1437 aa17.98■□□□□ 0.47
CCM2-213ENST00000480658 TSPY4P0CV99 314 aa17.97■□□□□ 0.47
CCM2-213ENST00000480658 TSPY10P0CW01 314 aa17.97■□□□□ 0.47
CCM2-213ENST00000480658 PLPPR3Q6T4P5 718 aa17.97■□□□□ 0.47
CCM2-213ENST00000480658 ZNF644Q9H582 1327 aaPredicted RBP17.96■□□□□ 0.46
CCM2-213ENST00000480658 SETD1BQ9UPS6 1966 aaKnown RBP17.95■□□□□ 0.46
CCM2-213ENST00000480658 DHX29Q7Z478 1369 aaKnown RBP17.95■□□□□ 0.46
CCM2-213ENST00000480658 DMRT2Q9Y5R5 561 aa17.95■□□□□ 0.46
CCM2-213ENST00000480658 MAST1Q9Y2H9 1570 aa17.94■□□□□ 0.46
CCM2-213ENST00000480658 ZMYM3Q14202 1370 aa17.91■□□□□ 0.46
CCM2-213ENST00000480658 CLTCQ00610 1675 aaKnown RBP17.9■□□□□ 0.46
CCM2-213ENST00000480658 CEBPAP49715 358 aaPredicted RBP17.9■□□□□ 0.46
CCM2-213ENST00000480658 KDM5DQ9BY66 1539 aa17.89■□□□□ 0.45
CCM2-213ENST00000480658 SHANK2Q9UPX8 1470 aa17.88■□□□□ 0.45
CCM2-213ENST00000480658 EIF2AK4Q9P2K8 1649 aaKnown RBP17.88■□□□□ 0.45
CCM2-213ENST00000480658 HSPA2P54652 639 aa17.88■□□□□ 0.45
CCM2-213ENST00000480658 GGT6Q6P531 493 aa17.88■□□□□ 0.45
CCM2-213ENST00000480658 KANK4Q5T7N3 995 aaPredicted RBP17.86■□□□□ 0.45
CCM2-213ENST00000480658 ZNF142P52746 1687 aaPredicted RBP17.86■□□□□ 0.45
CCM2-213ENST00000480658 ZC3H13Q5T200 1668 aaKnown RBP17.85■□□□□ 0.45
CCM2-213ENST00000480658 MYO3AQ8NEV4 1616 aa17.84■□□□□ 0.45
CCM2-213ENST00000480658 PTPN23Q9H3S7 1636 aa17.83■□□□□ 0.45
CCM2-213ENST00000480658 DUOX2Q9NRD8 1548 aa17.83■□□□□ 0.45
CCM2-213ENST00000480658 KIF3BO15066 747 aa17.83■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms