RNA–Protein interactions for RNA: ENST00000480598.1

LIMS4-202, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best)

Gene LIMS4, Length 679 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-202ENST00000480598 POGZQ7Z3K3 1410 aa24.06■■□□□ 1.44
LIMS4-202ENST00000480598 YEATS2Q9ULM3 1422 aa24.04■■□□□ 1.44
LIMS4-202ENST00000480598 ZFYVE16Q7Z3T8 1539 aa24.04■■□□□ 1.44
LIMS4-202ENST00000480598 CEP162Q5TB80 1403 aa24.03■■□□□ 1.44
LIMS4-202ENST00000480598 ARID4BQ4LE39 1312 aaPredicted RBP24.03■■□□□ 1.44
LIMS4-202ENST00000480598 ADAMTSL3P82987 1691 aa24.02■■□□□ 1.44
LIMS4-202ENST00000480598 CDC42BPBQ9Y5S2 1711 aa24.02■■□□□ 1.44
LIMS4-202ENST00000480598 BCORL1Q5H9F3 1711 aa24.01■■□□□ 1.43
LIMS4-202ENST00000480598 PREX2Q70Z35 1606 aa24■■□□□ 1.43
LIMS4-202ENST00000480598 MAGI2Q86UL8 1455 aa24■■□□□ 1.43
LIMS4-202ENST00000480598 SIGLEC1Q9BZZ2 1709 aa23.97■■□□□ 1.43
LIMS4-202ENST00000480598 CDC42BPAQ5VT25 1732 aa23.96■■□□□ 1.43
LIMS4-202ENST00000480598 MADDQ8WXG6 1647 aa23.95■■□□□ 1.43
LIMS4-202ENST00000480598 LOC105371045A0A1W2PR82 267 aa23.95■■□□□ 1.42
LIMS4-202ENST00000480598 PTPRMP28827 1452 aa23.94■■□□□ 1.42
LIMS4-202ENST00000480598 HECW2Q9P2P5 1572 aa23.94■■□□□ 1.42
LIMS4-202ENST00000480598 ZNF518AQ6AHZ1 1483 aa23.94■■□□□ 1.42
LIMS4-202ENST00000480598 AFAP1Q8N556 730 aa23.93■■□□□ 1.42
LIMS4-202ENST00000480598 ABCC1P33527 1531 aa23.92■■□□□ 1.42
LIMS4-202ENST00000480598 KDM5CP41229 1560 aa23.91■■□□□ 1.42
LIMS4-202ENST00000480598 ARHGEF12Q9NZN5 1544 aa23.9■■□□□ 1.42
LIMS4-202ENST00000480598 MTUS2Q5JR59 1369 aa23.89■■□□□ 1.41
LIMS4-202ENST00000480598 ATP10AO60312 1499 aa23.88■■□□□ 1.41
LIMS4-202ENST00000480598 TRAPPC8Q9Y2L5 1435 aa23.88■■□□□ 1.41
LIMS4-202ENST00000480598 ITSN2Q9NZM3 1697 aa23.88■■□□□ 1.41
LIMS4-202ENST00000480598 GPATCH8Q9UKJ3 1502 aaKnown RBP23.88■■□□□ 1.41
LIMS4-202ENST00000480598 C9orf84Q5VXU9 1444 aa23.87■■□□□ 1.41
LIMS4-202ENST00000480598 RIMS1Q86UR5 1692 aaKnown RBP23.87■■□□□ 1.41
LIMS4-202ENST00000480598 MLECQ14165 292 aa23.86■■□□□ 1.41
LIMS4-202ENST00000480598 MYT1LQ9UL68 1186 aa23.85■■□□□ 1.41
LIMS4-202ENST00000480598 ZNF777Q9ULD5 760 aaPredicted RBP23.85■■□□□ 1.41
LIMS4-202ENST00000480598 SAMD9LQ8IVG5 1584 aa23.85■■□□□ 1.41
LIMS4-202ENST00000480598 EHBP1L1Q8N3D4 1523 aa23.83■■□□□ 1.41
LIMS4-202ENST00000480598 DIP2CQ9Y2E4 1556 aa23.82■■□□□ 1.4
LIMS4-202ENST00000480598 MLH3Q9UHC1 1453 aa23.81■■□□□ 1.4
LIMS4-202ENST00000480598 ABCA6Q8N139 1617 aa23.81■■□□□ 1.4
LIMS4-202ENST00000480598 CCNB3Q8WWL7 1395 aa23.81■■□□□ 1.4
LIMS4-202ENST00000480598 SYCP2Q9BX26 1530 aa23.8■■□□□ 1.4
LIMS4-202ENST00000480598 CFDP1Q9UEE9 299 aaPredicted RBP23.79■■□□□ 1.4
LIMS4-202ENST00000480598 FER1L4A9Z1Z3 1794 aa23.78■■□□□ 1.4
LIMS4-202ENST00000480598 PLPPR3Q6T4P5 718 aa23.78■■□□□ 1.4
LIMS4-202ENST00000480598 TIAM1Q13009 1591 aa23.78■■□□□ 1.4
LIMS4-202ENST00000480598 KIDINS220Q9ULH0 1771 aa23.76■■□□□ 1.39
LIMS4-202ENST00000480598 HNRNPMP52272 730 aaKnown RBP eCLIP23.76■■□□□ 1.39
LIMS4-202ENST00000480598 VPS8Q8N3P4 1428 aa23.76■■□□□ 1.39
LIMS4-202ENST00000480598 REREQ9P2R6 1566 aa23.74■■□□□ 1.39
LIMS4-202ENST00000480598 KIAA1107Q9UPP5 1409 aa23.72■■□□□ 1.39
LIMS4-202ENST00000480598 PLEKHH2Q8IVE3 1493 aa23.72■■□□□ 1.39
LIMS4-202ENST00000480598 SPAG9O60271 1321 aaKnown RBP23.69■■□□□ 1.38
LIMS4-202ENST00000480598 ZNF644Q9H582 1327 aaPredicted RBP23.69■■□□□ 1.38
LIMS4-202ENST00000480598 NCOA2Q15596 1464 aa23.68■■□□□ 1.38
LIMS4-202ENST00000480598 LMTK3Q96Q04 1460 aa23.68■■□□□ 1.38
LIMS4-202ENST00000480598 SUPT6HQ7KZ85 1726 aaKnown RBP23.68■■□□□ 1.38
LIMS4-202ENST00000480598 AGLP35573 1532 aa23.67■■□□□ 1.38
LIMS4-202ENST00000480598 ATP7AQ04656 1500 aa23.65■■□□□ 1.38
LIMS4-202ENST00000480598 INO80Q9ULG1 1556 aaPredicted RBP23.65■■□□□ 1.38
LIMS4-202ENST00000480598 LRRC9Q6ZRR7 1453 aa23.63■■□□□ 1.37
LIMS4-202ENST00000480598 MBD5Q9P267 1494 aa23.62■■□□□ 1.37
LIMS4-202ENST00000480598 CEBPAP49715 358 aaPredicted RBP23.62■■□□□ 1.37
LIMS4-202ENST00000480598 KANK4Q5T7N3 995 aaPredicted RBP23.59■■□□□ 1.37
LIMS4-202ENST00000480598 HSPA2P54652 639 aa23.58■■□□□ 1.37
LIMS4-202ENST00000480598 CAMSAP2Q08AD1 1489 aa23.57■■□□□ 1.36
LIMS4-202ENST00000480598 MAP3K1Q13233 1512 aa23.57■■□□□ 1.36
LIMS4-202ENST00000480598 A2MP01023 1474 aa23.56■■□□□ 1.36
LIMS4-202ENST00000480598 PLXNC1O60486 1568 aa23.56■■□□□ 1.36
LIMS4-202ENST00000480598 ESF1Q9H501 851 aaKnown RBP23.54■■□□□ 1.36
LIMS4-202ENST00000480598 C3P01024 1663 aa23.54■■□□□ 1.36
LIMS4-202ENST00000480598 PREX1Q8TCU6 1659 aa23.52■■□□□ 1.36
LIMS4-202ENST00000480598 CCDC141Q6ZP82 1450 aa23.52■■□□□ 1.36
LIMS4-202ENST00000480598 ADGBQ8N7X0 1667 aa23.51■■□□□ 1.35
LIMS4-202ENST00000480598 RTEL1-TNFRSF6BF6WH68 1400 aa23.5■■□□□ 1.35
LIMS4-202ENST00000480598 CNTLNQ9NXG0 1405 aa23.49■■□□□ 1.35
LIMS4-202ENST00000480598 ARHGEF5Q12774 1597 aa23.46■■□□□ 1.35
LIMS4-202ENST00000480598 GGT6Q6P531 493 aa23.45■■□□□ 1.34
LIMS4-202ENST00000480598 SETD1BQ9UPS6 1966 aaKnown RBP23.45■■□□□ 1.34
LIMS4-202ENST00000480598 MYOM3Q5VTT5 1437 aa23.44■■□□□ 1.34
LIMS4-202ENST00000480598 UHRF1BP1Q6BDS2 1440 aa23.44■■□□□ 1.34
LIMS4-202ENST00000480598 RSPH4AQ5TD94 716 aa23.44■■□□□ 1.34
LIMS4-202ENST00000480598 ILDR1Q86SU0 546 aaPredicted RBP23.44■■□□□ 1.34
LIMS4-202ENST00000480598 MROH2AA6NES4 1674 aa23.44■■□□□ 1.34
LIMS4-202ENST00000480598 APLP2Q06481 763 aa23.43■■□□□ 1.34
LIMS4-202ENST00000480598 CLTCQ00610 1675 aaKnown RBP23.43■■□□□ 1.34
LIMS4-202ENST00000480598 DHX29Q7Z478 1369 aaKnown RBP23.42■■□□□ 1.34
LIMS4-202ENST00000480598 ZMYM3Q14202 1370 aa23.41■■□□□ 1.34
LIMS4-202ENST00000480598 MIA2Q96PC5 1412 aa23.41■■□□□ 1.34
LIMS4-202ENST00000480598 TSPY4P0CV99 314 aa23.39■■□□□ 1.33
LIMS4-202ENST00000480598 TSPY10P0CW01 314 aa23.39■■□□□ 1.33
LIMS4-202ENST00000480598 KIF3BO15066 747 aa23.36■■□□□ 1.33
LIMS4-202ENST00000480598 NPATQ14207 1427 aa23.35■■□□□ 1.33
LIMS4-202ENST00000480598 MAST1Q9Y2H9 1570 aa23.35■■□□□ 1.33
LIMS4-202ENST00000480598 PPP6R1Q9UPN7 881 aa23.33■■□□□ 1.33
LIMS4-202ENST00000480598 STRCQ7RTU9 1775 aa23.32■■□□□ 1.32
LIMS4-202ENST00000480598 PTPN23Q9H3S7 1636 aa23.31■■□□□ 1.32
LIMS4-202ENST00000480598 PTPRKQ15262 1439 aa23.31■■□□□ 1.32
LIMS4-202ENST00000480598 FGD6Q6ZV73 1430 aa23.27■■□□□ 1.32
LIMS4-202ENST00000480598 KDM5DQ9BY66 1539 aa23.27■■□□□ 1.32
LIMS4-202ENST00000480598 MYO3AQ8NEV4 1616 aa23.26■■□□□ 1.31
LIMS4-202ENST00000480598 ABCC5O15440 1437 aa23.25■■□□□ 1.31
LIMS4-202ENST00000480598 CROCC2H7BZ55 1655 aa23.24■■□□□ 1.31
LIMS4-202ENST00000480598 TCOF1Q13428 1488 aaKnown RBP23.24■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms