RNA–Protein interactions for RNA: ENST00000480362.5

UPF3A-206, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 965 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-206ENST00000480362 PLCH2O75038 1416 aa26.65■■□□□ 1.86
UPF3A-206ENST00000480362 CDC42BPBQ9Y5S2 1711 aa26.64■■□□□ 1.85
UPF3A-206ENST00000480362 ZNF644Q9H582 1327 aaPredicted RBP26.64■■□□□ 1.85
UPF3A-206ENST00000480362 ITGAEP38570 1179 aa26.63■■□□□ 1.85
UPF3A-206ENST00000480362 ARHGAP5Q13017 1502 aa26.6■■□□□ 1.85
UPF3A-206ENST00000480362 CAMSAP2Q08AD1 1489 aa26.59■■□□□ 1.85
UPF3A-206ENST00000480362 EFCAB2Q5VUJ9 269 aa26.57■■□□□ 1.84
UPF3A-206ENST00000480362 GLI2P10070 1586 aa26.56■■□□□ 1.84
UPF3A-206ENST00000480362 CD109Q6YHK3 1445 aa26.56■■□□□ 1.84
UPF3A-206ENST00000480362 FAM69CQ0P6D2 419 aa26.55■■□□□ 1.84
UPF3A-206ENST00000480362 ARAP3Q8WWN8 1544 aa26.55■■□□□ 1.84
UPF3A-206ENST00000480362 DIP2BQ9P265 1576 aa26.54■■□□□ 1.84
UPF3A-206ENST00000480362 SAMD9LQ8IVG5 1584 aa26.53■■□□□ 1.84
UPF3A-206ENST00000480362 HNRNPMP52272 730 aaKnown RBP eCLIP26.48■■□□□ 1.833e-6■■■■□ 21.2
UPF3A-206ENST00000480362 FANCAO15360 1455 aa26.48■■□□□ 1.83
UPF3A-206ENST00000480362 PTPRKQ15262 1439 aa26.48■■□□□ 1.83
UPF3A-206ENST00000480362 MAP3K4Q9Y6R4 1608 aa26.47■■□□□ 1.83
UPF3A-206ENST00000480362 DAPK1P53355 1430 aa26.47■■□□□ 1.83
UPF3A-206ENST00000480362 DNMT1P26358 1616 aaKnown RBP26.47■■□□□ 1.83
UPF3A-206ENST00000480362 PLEKHH2Q8IVE3 1493 aa26.46■■□□□ 1.83
UPF3A-206ENST00000480362 ABCC5O15440 1437 aa26.46■■□□□ 1.83
UPF3A-206ENST00000480362 KIAA1107Q9UPP5 1409 aa26.44■■□□□ 1.82
UPF3A-206ENST00000480362 MBD5Q9P267 1494 aa26.43■■□□□ 1.82
UPF3A-206ENST00000480362 RSPH4AQ5TD94 716 aa26.42■■□□□ 1.82
UPF3A-206ENST00000480362 CHIC2Q9UKJ5 165 aa26.42■■□□□ 1.82
UPF3A-206ENST00000480362 SYCP2Q9BX26 1530 aa26.41■■□□□ 1.82
UPF3A-206ENST00000480362 KIF13AQ9H1H9 1805 aa26.41■■□□□ 1.82
UPF3A-206ENST00000480362 ARHGEF5Q12774 1597 aa26.41■■□□□ 1.82
UPF3A-206ENST00000480362 AKNAQ7Z591 1439 aa26.39■■□□□ 1.82
UPF3A-206ENST00000480362 ABCC1P33527 1531 aa26.39■■□□□ 1.82
UPF3A-206ENST00000480362 ARHGEF12Q9NZN5 1544 aa26.39■■□□□ 1.82
UPF3A-206ENST00000480362 CFAP74Q9C0B2 1584 aa26.38■■□□□ 1.81
UPF3A-206ENST00000480362 TSPY4P0CV99 314 aa26.36■■□□□ 1.81
UPF3A-206ENST00000480362 TSPY10P0CW01 314 aa26.36■■□□□ 1.81
UPF3A-206ENST00000480362 ADGRL1O94910 1474 aa26.36■■□□□ 1.81
UPF3A-206ENST00000480362 CCDC141Q6ZP82 1450 aa26.36■■□□□ 1.81
UPF3A-206ENST00000480362 NEO1Q92859 1461 aa26.36■■□□□ 1.81
UPF3A-206ENST00000480362 CROCC2H7BZ55 1655 aa26.34■■□□□ 1.81
UPF3A-206ENST00000480362 SCAPERQ9BY12 1400 aa26.34■■□□□ 1.81
UPF3A-206ENST00000480362 TSPOAP1O95153 1857 aa26.34■■□□□ 1.81
UPF3A-206ENST00000480362 TRAPPC8Q9Y2L5 1435 aa26.32■■□□□ 1.8
UPF3A-206ENST00000480362 RRP7BPQ9NSQ0 103 aa26.32■■□□□ 1.8
UPF3A-206ENST00000480362 SHANK2Q9UPX8 1470 aa26.31■■□□□ 1.8
UPF3A-206ENST00000480362 PPRC1Q5VV67 1664 aaKnown RBP26.31■■□□□ 1.8
UPF3A-206ENST00000480362 ROCK1Q13464 1354 aa26.3■■□□□ 1.8
UPF3A-206ENST00000480362 C9orf84Q5VXU9 1444 aa26.3■■□□□ 1.8
UPF3A-206ENST00000480362 SETD5Q9C0A6 1442 aa26.3■■□□□ 1.8
UPF3A-206ENST00000480362 TRHP20396 242 aaPredicted RBP26.29■■□□□ 1.8
UPF3A-206ENST00000480362 TEX14Q8IWB6 1497 aa26.29■■□□□ 1.8
UPF3A-206ENST00000480362 AFAP1Q8N556 730 aa26.28■■□□□ 1.8
UPF3A-206ENST00000480362 HFM1A2PYH4 1435 aa26.28■■□□□ 1.8
UPF3A-206ENST00000480362 ADGBQ8N7X0 1667 aa26.26■■□□□ 1.79
UPF3A-206ENST00000480362 ADGRL2O95490 1459 aa26.26■■□□□ 1.79
UPF3A-206ENST00000480362 NAIPQ13075 1403 aa26.25■■□□□ 1.79
UPF3A-206ENST00000480362 NCOA1Q15788 1441 aa26.25■■□□□ 1.79
UPF3A-206ENST00000480362 ANKRD30AQ9BXX3 1397 aa26.25■■□□□ 1.79
UPF3A-206ENST00000480362 MAST1Q9Y2H9 1570 aa26.24■■□□□ 1.79
UPF3A-206ENST00000480362 RAB3GAP2Q9H2M9 1393 aa26.23■■□□□ 1.79
UPF3A-206ENST00000480362 SPAG9O60271 1321 aaKnown RBP26.22■■□□□ 1.79
UPF3A-206ENST00000480362 DENND4BO75064 1496 aaPredicted RBP26.21■■□□□ 1.79
UPF3A-206ENST00000480362 ZNF518AQ6AHZ1 1483 aa26.2■■□□□ 1.78
UPF3A-206ENST00000480362 GCC2Q8IWJ2 1684 aa26.19■■□□□ 1.78
UPF3A-206ENST00000480362 POGZQ7Z3K3 1410 aa26.19■■□□□ 1.78
UPF3A-206ENST00000480362 HRCP23327 699 aa26.18■■□□□ 1.78
UPF3A-206ENST00000480362 RTEL1-TNFRSF6BF6WH68 1400 aa26.17■■□□□ 1.78
UPF3A-206ENST00000480362 RAPGEF3O95398 923 aa26.17■■□□□ 1.78
UPF3A-206ENST00000480362 MYT1LQ9UL68 1186 aa26.15■■□□□ 1.78
UPF3A-206ENST00000480362 KIF15Q9NS87 1388 aa26.14■■□□□ 1.78
UPF3A-206ENST00000480362 KDM5CP41229 1560 aa26.12■■□□□ 1.77
UPF3A-206ENST00000480362 ATP7AQ04656 1500 aa26.12■■□□□ 1.77
UPF3A-206ENST00000480362 ZFYVE16Q7Z3T8 1539 aa26.12■■□□□ 1.77
UPF3A-206ENST00000480362 PLXNC1O60486 1568 aa26.12■■□□□ 1.77
UPF3A-206ENST00000480362 INO80Q9ULG1 1556 aaPredicted RBP26.11■■□□□ 1.77
UPF3A-206ENST00000480362 RICTORQ6R327 1708 aa26.11■■□□□ 1.77
UPF3A-206ENST00000480362 KDM6BO15054 1643 aa26.1■■□□□ 1.77
UPF3A-206ENST00000480362 ANKRD50Q9ULJ7 1429 aa26.08■■□□□ 1.77
UPF3A-206ENST00000480362 MLH3Q9UHC1 1453 aa26.08■■□□□ 1.77
UPF3A-206ENST00000480362 KIDINS220Q9ULH0 1771 aa26.07■■□□□ 1.76
UPF3A-206ENST00000480362 FRMPD1Q5SYB0 1578 aa26.06■■□□□ 1.76
UPF3A-206ENST00000480362 COL17A1Q9UMD9 1497 aaPredicted RBP26.05■■□□□ 1.76
UPF3A-206ENST00000480362 HECW2Q9P2P5 1572 aa26.05■■□□□ 1.76
UPF3A-206ENST00000480362 DUOX2Q9NRD8 1548 aa26.04■■□□□ 1.76
UPF3A-206ENST00000480362 CCER1Q8TC90 406 aaPredicted RBP26.04■■□□□ 1.76
UPF3A-206ENST00000480362 TRIM52Q96A61 297 aa26.01■■□□□ 1.75
UPF3A-206ENST00000480362 ACIN1Q9UKV3 1341 aaKnown RBP26.01■■□□□ 1.75
UPF3A-206ENST00000480362 DHX57Q6P158 1386 aaKnown RBP26■■□□□ 1.75
UPF3A-206ENST00000480362 ZMYM4Q5VZL5 1548 aa25.99■■□□□ 1.75
UPF3A-206ENST00000480362 ERBINQ96RT1 1412 aa25.97■■□□□ 1.75
UPF3A-206ENST00000480362 DHX29Q7Z478 1369 aaKnown RBP25.97■■□□□ 1.75
UPF3A-206ENST00000480362 MAGI2Q86UL8 1455 aa25.95■■□□□ 1.74
UPF3A-206ENST00000480362 ABCA6Q8N139 1617 aa25.95■■□□□ 1.74
UPF3A-206ENST00000480362 A2MP01023 1474 aa25.94■■□□□ 1.74
UPF3A-206ENST00000480362 YEATS2Q9ULM3 1422 aa25.94■■□□□ 1.74
UPF3A-206ENST00000480362 DIP2CQ9Y2E4 1556 aa25.92■■□□□ 1.74
UPF3A-206ENST00000480362 NUP155O75694 1391 aa25.87■■□□□ 1.73
UPF3A-206ENST00000480362 KIF3BO15066 747 aa25.87■■□□□ 1.73
UPF3A-206ENST00000480362 MPHOSPH9Q99550 1183 aa25.87■■□□□ 1.73
UPF3A-206ENST00000480362 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.86■■□□□ 1.735e-8■■■■□ 20.3
UPF3A-206ENST00000480362 ATP10AO60312 1499 aa25.85■■□□□ 1.73
UPF3A-206ENST00000480362 EIF2AK4Q9P2K8 1649 aaKnown RBP25.85■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms