RNA–Protein interactions for RNA: ENST00000477572.1

VPS50-213, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-213ENST00000477572 C2orf72A6NCS6 295 aa13.16□□□□□ -0.3
VPS50-213ENST00000477572 MARVELD3Q96A59 401 aa13.16□□□□□ -0.3
VPS50-213ENST00000477572 RYDENQ9NUL5 291 aaKnown RBP13.13□□□□□ -0.31
VPS50-213ENST00000477572 TMC2Q8TDI7 906 aa13.12□□□□□ -0.31
VPS50-213ENST00000477572 ZNF710Q8N1W2 664 aa13.11□□□□□ -0.31
VPS50-213ENST00000477572 KIF3CO14782 793 aa13.1□□□□□ -0.31
VPS50-213ENST00000477572 DOK7Q18PE1 504 aa13.09□□□□□ -0.31
VPS50-213ENST00000477572 BBXQ8WY36 941 aaPredicted RBP13.08□□□□□ -0.32
VPS50-213ENST00000477572 EMP3P54852 163 aa13.04□□□□□ -0.32
VPS50-213ENST00000477572 RIMBP2O15034 1052 aa13.02□□□□□ -0.33
VPS50-213ENST00000477572 FAM205CA6NFA0 338 aa12.99□□□□□ -0.33
VPS50-213ENST00000477572 HOXB1P14653 301 aaPredicted RBP12.99□□□□□ -0.33
VPS50-213ENST00000477572 ARSIQ5FYB1 569 aa12.99□□□□□ -0.33
VPS50-213ENST00000477572 KHSRPQ92945 711 aaKnown RBP eCLIP12.99□□□□□ -0.33
VPS50-213ENST00000477572 GPHNQ9NQX3 736 aaPredicted RBP12.99□□□□□ -0.33
VPS50-213ENST00000477572 DSG2Q14126 1118 aa12.98□□□□□ -0.33
VPS50-213ENST00000477572 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.98□□□□□ -0.33
VPS50-213ENST00000477572 GPR153Q6NV75 609 aa12.96□□□□□ -0.33
VPS50-213ENST00000477572 CDAN1Q8IWY9 1227 aa12.96□□□□□ -0.33
VPS50-213ENST00000477572 PLPP6Q8IY26 295 aa12.96□□□□□ -0.33
VPS50-213ENST00000477572 CFAP44Q96MT7 982 aa12.96□□□□□ -0.33
VPS50-213ENST00000477572 POTEB3A0JP26 581 aa12.95□□□□□ -0.34
VPS50-213ENST00000477572 POTEBQ6S5H4 581 aa12.95□□□□□ -0.34
VPS50-213ENST00000477572 PAXIP1Q6ZW49 1069 aaPredicted RBP12.95□□□□□ -0.34
VPS50-213ENST00000477572 CADPS2Q86UW7 1296 aa12.95□□□□□ -0.34
VPS50-213ENST00000477572 SPRYD3Q8NCJ5 442 aa12.95□□□□□ -0.34
VPS50-213ENST00000477572 NCKAP5LQ9HCH0 1330 aa12.94□□□□□ -0.34
VPS50-213ENST00000477572 FOXK1P85037 733 aa12.93□□□□□ -0.34
VPS50-213ENST00000477572 HS3ST6Q96QI5 342 aa12.93□□□□□ -0.34
VPS50-213ENST00000477572 CRISPLD2Q9H0B8 497 aa12.93□□□□□ -0.34
VPS50-213ENST00000477572 ZSWIM6Q9HCJ5 1215 aa12.93□□□□□ -0.34
VPS50-213ENST00000477572 ERBB3P21860 1342 aa12.91□□□□□ -0.34
VPS50-213ENST00000477572 LARP6Q9BRS8 491 aaKnown RBP12.91□□□□□ -0.34
VPS50-213ENST00000477572 PDE4AP27815 886 aa12.89□□□□□ -0.35
VPS50-213ENST00000477572 PCDHGA4Q9Y5G9 962 aa12.89□□□□□ -0.35
VPS50-213ENST00000477572 NUDT7P0C024 238 aa12.88□□□□□ -0.35
VPS50-213ENST00000477572 PPP1R15BQ5SWA1 713 aa12.87□□□□□ -0.35
VPS50-213ENST00000477572 PCDH10Q9P2E7 1040 aa12.87□□□□□ -0.35
VPS50-213ENST00000477572 SLC34A2O95436 690 aa12.86□□□□□ -0.35
VPS50-213ENST00000477572 VARS2Q5ST30 1063 aaKnown RBP12.86□□□□□ -0.35
VPS50-213ENST00000477572 PLSCR2Q9NRY7 297 aa12.86□□□□□ -0.35
VPS50-213ENST00000477572 UPF1Q92900 1129 aaKnown RBP eCLIP12.85□□□□□ -0.35
VPS50-213ENST00000477572 DDX27Q96GQ7 796 aaKnown RBP12.82□□□□□ -0.36
VPS50-213ENST00000477572 PTCD2Q8WV60 388 aaKnown RBP12.8□□□□□ -0.36
VPS50-213ENST00000477572 ZNF316A6NFI3 1004 aaPredicted RBP12.79□□□□□ -0.36
VPS50-213ENST00000477572 LHX6Q9UPM6 363 aa12.78□□□□□ -0.36
VPS50-213ENST00000477572 MFSD10Q14728 455 aa12.77□□□□□ -0.37
VPS50-213ENST00000477572 OXER1Q8TDS5 423 aa12.75□□□□□ -0.37
VPS50-213ENST00000477572 KRTAP3-3Q9BYR6 98 aa12.74□□□□□ -0.37
VPS50-213ENST00000477572 KRTAP3-2Q9BYR7 98 aa12.74□□□□□ -0.37
VPS50-213ENST00000477572 TBC1D12O60347 775 aa12.73□□□□□ -0.37
VPS50-213ENST00000477572 KDM4FA0A1W2PPD8 638 aa12.71□□□□□ -0.37
VPS50-213ENST00000477572 ZNF687Q8N1G0 1237 aa12.7□□□□□ -0.38
VPS50-213ENST00000477572 EMILIN3Q9NT22 766 aa12.7□□□□□ -0.38
VPS50-213ENST00000477572 TSHZ2Q9NRE2 1034 aa12.68□□□□□ -0.38
VPS50-213ENST00000477572 MAP3K9P80192 1104 aa12.66□□□□□ -0.38
VPS50-213ENST00000477572 AXIN2Q9Y2T1 843 aa12.64□□□□□ -0.39
VPS50-213ENST00000477572 EVI5O60447 810 aa12.62□□□□□ -0.39
VPS50-213ENST00000477572 SPNS2Q8IVW8 549 aa12.62□□□□□ -0.39
VPS50-213ENST00000477572 DPYSL4O14531 572 aa12.6□□□□□ -0.39
VPS50-213ENST00000477572 POTEEQ6S8J3 1075 aa12.6□□□□□ -0.39
VPS50-213ENST00000477572 CAMK2BQ13554 666 aa12.59□□□□□ -0.39
VPS50-213ENST00000477572 WDR70Q9NW82 654 aa12.59□□□□□ -0.39
VPS50-213ENST00000477572 ANKRD13DQ6ZTN6 518 aa12.58□□□□□ -0.4
VPS50-213ENST00000477572 ZNF454Q8N9F8 522 aa12.58□□□□□ -0.4
VPS50-213ENST00000477572 PSDA5PKW4 1024 aaPredicted RBP12.56□□□□□ -0.4
VPS50-213ENST00000477572 PPP4R3BQ5MIZ7 849 aa12.56□□□□□ -0.4
VPS50-213ENST00000477572 PLCB2Q00722 1185 aa12.54□□□□□ -0.4
VPS50-213ENST00000477572 ANO8Q9HCE9 1232 aaPredicted RBP12.54□□□□□ -0.4
VPS50-213ENST00000477572 PSEN2P49810 448 aa12.53□□□□□ -0.4
VPS50-213ENST00000477572 LSM11P83369 360 aaKnown RBP eCLIP12.53□□□□□ -0.4
VPS50-213ENST00000477572 MMRN1Q13201 1228 aa12.53□□□□□ -0.4
VPS50-213ENST00000477572 E2F4Q16254 413 aa12.53□□□□□ -0.4
VPS50-213ENST00000477572 PBX2P40425 430 aa12.51□□□□□ -0.41
VPS50-213ENST00000477572 FOSBP53539 338 aa12.51□□□□□ -0.41
VPS50-213ENST00000477572 ARHGAP33O14559 1287 aa12.5□□□□□ -0.41
VPS50-213ENST00000477572 KCNK17Q96T54 332 aa12.5□□□□□ -0.41
VPS50-213ENST00000477572 DMRTA1Q5VZB9 504 aa12.48□□□□□ -0.41
VPS50-213ENST00000477572 JPH4Q96JJ6 628 aa12.47□□□□□ -0.41
VPS50-213ENST00000477572 DDX12PQ92771 950 aa12.45□□□□□ -0.42
VPS50-213ENST00000477572 ADAM33Q9BZ11 813 aa12.45□□□□□ -0.42
VPS50-213ENST00000477572 PCDHGA10Q9Y5H3 936 aa12.45□□□□□ -0.42
VPS50-213ENST00000477572 ZDHHC16Q969W1 377 aa12.44□□□□□ -0.42
VPS50-213ENST00000477572 HAP1P54257 671 aaPredicted RBP12.43□□□□□ -0.42
VPS50-213ENST00000477572 BCL2L12Q9HB09 334 aa12.42□□□□□ -0.42
VPS50-213ENST00000477572 PDIA6Q15084 440 aa12.4□□□□□ -0.42
VPS50-213ENST00000477572 ADGRD1Q6QNK2 874 aa12.4□□□□□ -0.42
VPS50-213ENST00000477572 KCNH8Q96L42 1107 aa12.4□□□□□ -0.42
VPS50-213ENST00000477572 PTPREP23469 700 aa12.39□□□□□ -0.43
VPS50-213ENST00000477572 TYW1BQ6NUM6 668 aa12.39□□□□□ -0.43
VPS50-213ENST00000477572 RBM33Q96EV2 1170 aaKnown RBP12.39□□□□□ -0.43
VPS50-213ENST00000477572 MYT1LQ9UL68 1186 aa12.39□□□□□ -0.43
VPS50-213ENST00000477572 PHF14O94880 888 aa12.38□□□□□ -0.43
VPS50-213ENST00000477572 SPDYE16A6NNV3 312 aaPredicted RBP12.36□□□□□ -0.43
VPS50-213ENST00000477572 KCNV2Q8TDN2 545 aa12.36□□□□□ -0.43
VPS50-213ENST00000477572 GRXCR2A6NFK2 248 aa12.35□□□□□ -0.43
VPS50-213ENST00000477572 RNF166Q96A37 237 aaPredicted RBP12.35□□□□□ -0.43
VPS50-213ENST00000477572 NBR1Q14596 966 aa12.34□□□□□ -0.43
VPS50-213ENST00000477572 ARIH1Q9Y4X5 557 aaPredicted RBP12.34□□□□□ -0.43
VPS50-213ENST00000477572 PTGER2P43116 358 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms