RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 TMC2Q8TDI7 906 aa8.07□□□□□ -1.12
VPS13D-207ENST00000476169 DAXXQ9UER7 740 aaPredicted RBP8.07□□□□□ -1.12
VPS13D-207ENST00000476169 HAX1O00165 279 aa8.06□□□□□ -1.12
VPS13D-207ENST00000476169 ZMYND10O75800 440 aa8.06□□□□□ -1.12
VPS13D-207ENST00000476169 CLCN6P51797 869 aa8.06□□□□□ -1.12
VPS13D-207ENST00000476169 NEUROD2Q15784 382 aa8.06□□□□□ -1.12
VPS13D-207ENST00000476169 ARXQ96QS3 562 aa8.06□□□□□ -1.12
VPS13D-207ENST00000476169 DPYSL4O14531 572 aa8.05□□□□□ -1.12
VPS13D-207ENST00000476169 MLLT3P42568 568 aaPredicted RBP8.05□□□□□ -1.12
VPS13D-207ENST00000476169 DSG2Q14126 1118 aa8.05□□□□□ -1.12
VPS13D-207ENST00000476169 ATN1P54259 1190 aaPredicted RBP8.04□□□□□ -1.12
VPS13D-207ENST00000476169 PDCD7Q8N8D1 485 aaKnown RBP8.04□□□□□ -1.12
VPS13D-207ENST00000476169 EMILIN3Q9NT22 766 aa8.04□□□□□ -1.12
VPS13D-207ENST00000476169 SPDYE16A6NNV3 312 aaPredicted RBP8.03□□□□□ -1.12
VPS13D-207ENST00000476169 G3V3G9 751 aa8.03□□□□□ -1.12
VPS13D-207ENST00000476169 RBM26Q5T8P6 1007 aaKnown RBP8.03□□□□□ -1.12
VPS13D-207ENST00000476169 ERICH6Q7L0X2 663 aa8.03□□□□□ -1.12
VPS13D-207ENST00000476169 GPIHBP1Q8IV16 184 aa8.03□□□□□ -1.12
VPS13D-207ENST00000476169 FOXK1P85037 733 aa8.02□□□□□ -1.13
VPS13D-207ENST00000476169 BARGINQ6ZT62 677 aa8.02□□□□□ -1.13
VPS13D-207ENST00000476169 ATMINO43313 823 aaPredicted RBP8.01□□□□□ -1.13
VPS13D-207ENST00000476169 IRX5P78411 483 aaPredicted RBP8.01□□□□□ -1.13
VPS13D-207ENST00000476169 PDIA6Q15084 440 aa8.01□□□□□ -1.13
VPS13D-207ENST00000476169 IER5LQ5T953 404 aa8.01□□□□□ -1.13
VPS13D-207ENST00000476169 OCEL1Q9H607 264 aa8.01□□□□□ -1.13
VPS13D-207ENST00000476169 BOLA1Q9Y3E2 137 aa8.01□□□□□ -1.13
VPS13D-207ENST00000476169 EVX2Q03828 476 aa8□□□□□ -1.13
VPS13D-207ENST00000476169 PLPP6Q8IY26 295 aa8□□□□□ -1.13
VPS13D-207ENST00000476169 ASTLQ6HA08 431 aaPredicted RBP7.99□□□□□ -1.13
VPS13D-207ENST00000476169 C2orf72A6NCS6 295 aa7.98□□□□□ -1.13
VPS13D-207ENST00000476169 PLCG2P16885 1265 aa7.98□□□□□ -1.13
VPS13D-207ENST00000476169 KRI1Q8N9T8 703 aaKnown RBP7.98□□□□□ -1.13
VPS13D-207ENST00000476169 TMEM121BQ9BXQ6 578 aaPredicted RBP7.98□□□□□ -1.13
VPS13D-207ENST00000476169 AK7Q96M32 723 aa7.97□□□□□ -1.13
VPS13D-207ENST00000476169 KIF3CO14782 793 aa7.95□□□□□ -1.14
VPS13D-207ENST00000476169 MAP3K9P80192 1104 aa7.95□□□□□ -1.14
VPS13D-207ENST00000476169 L3MBTL3Q96JM7 780 aaPredicted RBP7.95□□□□□ -1.14
VPS13D-207ENST00000476169 C14orf37Q86TY3 774 aa7.94□□□□□ -1.14
VPS13D-207ENST00000476169 HOMEZQ8IX15 550 aa7.93□□□□□ -1.14
VPS13D-207ENST00000476169 GRXCR2A6NFK2 248 aa7.92□□□□□ -1.14
VPS13D-207ENST00000476169 UPF1Q92900 1129 aaKnown RBP eCLIP7.92□□□□□ -1.14
VPS13D-207ENST00000476169 SEC24BO95487 1268 aa7.91□□□□□ -1.14
VPS13D-207ENST00000476169 NUTM2FA1L443 756 aa7.9□□□□□ -1.14
VPS13D-207ENST00000476169 GPBP1L1Q9HC44 474 aaPredicted RBP7.9□□□□□ -1.14
VPS13D-207ENST00000476169 GPR37O15354 613 aa7.89□□□□□ -1.15
VPS13D-207ENST00000476169 TRIM66O15016 1216 aa7.88□□□□□ -1.15
VPS13D-207ENST00000476169 GABBR2O75899 941 aa7.88□□□□□ -1.15
VPS13D-207ENST00000476169 TMEM92Q6UXU6 159 aa7.88□□□□□ -1.15
VPS13D-207ENST00000476169 OXER1Q8TDS5 423 aa7.88□□□□□ -1.15
VPS13D-207ENST00000476169 DCBLD2Q96PD2 775 aa7.88□□□□□ -1.15
VPS13D-207ENST00000476169 PDE4DQ08499 809 aa7.87□□□□□ -1.15
VPS13D-207ENST00000476169 KDM4CQ9H3R0 1056 aa7.87□□□□□ -1.15
VPS13D-207ENST00000476169 COLQQ9Y215 455 aaPredicted RBP7.87□□□□□ -1.15
VPS13D-207ENST00000476169 TBC1D12O60347 775 aa7.86□□□□□ -1.15
VPS13D-207ENST00000476169 PELP1Q8IZL8 1130 aaKnown RBP7.86□□□□□ -1.15
VPS13D-207ENST00000476169 OSBPP22059 807 aa7.85□□□□□ -1.15
VPS13D-207ENST00000476169 PTGER2P43116 358 aa7.85□□□□□ -1.15
VPS13D-207ENST00000476169 DDX12PQ92771 950 aa7.85□□□□□ -1.15
VPS13D-207ENST00000476169 MINK1Q8N4C8 1332 aaPredicted RBP7.84□□□□□ -1.15
VPS13D-207ENST00000476169 ZNF316A6NFI3 1004 aaPredicted RBP7.84□□□□□ -1.15
VPS13D-207ENST00000476169 IL27Q8NEV9 243 aa7.84□□□□□ -1.15
VPS13D-207ENST00000476169 SLC39A7Q92504 469 aa7.84□□□□□ -1.15
VPS13D-207ENST00000476169 EVI5O60447 810 aa7.83□□□□□ -1.16
VPS13D-207ENST00000476169 FCHSD2O94868 740 aa7.83□□□□□ -1.16
VPS13D-207ENST00000476169 MAP2K5Q13163 448 aa7.83□□□□□ -1.16
VPS13D-207ENST00000476169 GNPATO15228 680 aa7.82□□□□□ -1.16
VPS13D-207ENST00000476169 C3orf67Q6ZVT6 689 aa7.82□□□□□ -1.16
VPS13D-207ENST00000476169 CCDC102AQ96A19 550 aa7.82□□□□□ -1.16
VPS13D-207ENST00000476169 C7P10643 843 aa7.81□□□□□ -1.16
VPS13D-207ENST00000476169 HIC1Q14526 733 aa7.81□□□□□ -1.16
VPS13D-207ENST00000476169 IRF6O14896 467 aa7.8□□□□□ -1.16
VPS13D-207ENST00000476169 POTEFA5A3E0 1075 aa7.79□□□□□ -1.16
VPS13D-207ENST00000476169 PTCD2Q8WV60 388 aaKnown RBP7.79□□□□□ -1.16
VPS13D-207ENST00000476169 METRNQ9UJH8 293 aa7.79□□□□□ -1.16
VPS13D-207ENST00000476169 PRIM1P49642 420 aaKnown RBP7.78□□□□□ -1.16
VPS13D-207ENST00000476169 FECHP22830 423 aa7.77□□□□□ -1.17
VPS13D-207ENST00000476169 AMHR2Q16671 573 aa7.77□□□□□ -1.17
VPS13D-207ENST00000476169 PTGDRQ13258 359 aa7.76□□□□□ -1.17
VPS13D-207ENST00000476169 FAM117AQ9C073 453 aa7.76□□□□□ -1.17
VPS13D-207ENST00000476169 SLC34A2O95436 690 aa7.75□□□□□ -1.17
VPS13D-207ENST00000476169 PARP9Q8IXQ6 854 aa7.75□□□□□ -1.17
VPS13D-207ENST00000476169 DDRGK1Q96HY6 314 aa7.74□□□□□ -1.17
VPS13D-207ENST00000476169 ANO8Q9HCE9 1232 aaPredicted RBP7.74□□□□□ -1.17
VPS13D-207ENST00000476169 EN1Q05925 392 aaPredicted RBP7.73□□□□□ -1.17
VPS13D-207ENST00000476169 TTLL12Q14166 644 aaPredicted RBP7.73□□□□□ -1.17
VPS13D-207ENST00000476169 EPAS1Q99814 870 aa7.73□□□□□ -1.17
VPS13D-207ENST00000476169 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.73□□□□□ -1.17
VPS13D-207ENST00000476169 MAP3K7O43318 606 aa7.72□□□□□ -1.17
VPS13D-207ENST00000476169 PHF14O94880 888 aa7.72□□□□□ -1.17
VPS13D-207ENST00000476169 POTEIP0CG38 1075 aa7.71□□□□□ -1.18
VPS13D-207ENST00000476169 RBM33Q96EV2 1170 aaKnown RBP7.71□□□□□ -1.18
VPS13D-207ENST00000476169 CDHR5Q9HBB8 845 aa7.71□□□□□ -1.18
VPS13D-207ENST00000476169 PLEKHG3A1L390 1219 aa7.7□□□□□ -1.18
VPS13D-207ENST00000476169 SUPT5HO00267 1087 aaKnown RBP7.7□□□□□ -1.18
VPS13D-207ENST00000476169 PCDHGA4Q9Y5G9 962 aa7.7□□□□□ -1.18
VPS13D-207ENST00000476169 TYW1BQ6NUM6 668 aa7.69□□□□□ -1.18
VPS13D-207ENST00000476169 GIGYF2Q6Y7W6 1299 aaKnown RBP7.68□□□□□ -1.18
VPS13D-207ENST00000476169 SLAIN1Q8ND83 568 aa7.68□□□□□ -1.18
VPS13D-207ENST00000476169 NPDC1Q9NQX5 325 aaPredicted RBP7.68□□□□□ -1.18
VPS13D-207ENST00000476169 PCDHGA10Q9Y5H3 936 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms