RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 PREX2Q70Z35 1606 aa28.87■■■□□ 2.21
UPF3A-203ENST00000474056 ZMYM4Q5VZL5 1548 aa28.86■■■□□ 2.21
UPF3A-203ENST00000474056 CDC42BPAQ5VT25 1732 aa28.85■■■□□ 2.21
UPF3A-203ENST00000474056 SCAPERQ9BY12 1400 aa28.85■■■□□ 2.21
UPF3A-203ENST00000474056 EFCAB2Q5VUJ9 269 aa28.83■■■□□ 2.21
UPF3A-203ENST00000474056 POGZQ7Z3K3 1410 aa28.82■■■□□ 2.2
UPF3A-203ENST00000474056 ZFYVE16Q7Z3T8 1539 aa28.77■■■□□ 2.2
UPF3A-203ENST00000474056 YEATS2Q9ULM3 1422 aa28.75■■■□□ 2.19
UPF3A-203ENST00000474056 BCORL1Q5H9F3 1711 aa28.74■■■□□ 2.19
UPF3A-203ENST00000474056 SIGLEC1Q9BZZ2 1709 aa28.74■■■□□ 2.19
UPF3A-203ENST00000474056 ADAMTSL3P82987 1691 aa28.74■■■□□ 2.19
UPF3A-203ENST00000474056 MAGI2Q86UL8 1455 aa28.73■■■□□ 2.19
UPF3A-203ENST00000474056 ITSN2Q9NZM3 1697 aa28.72■■■□□ 2.19
UPF3A-203ENST00000474056 ABCC1P33527 1531 aa28.71■■■□□ 2.19
UPF3A-203ENST00000474056 MTUS2Q5JR59 1369 aa28.71■■■□□ 2.19
UPF3A-203ENST00000474056 KDM5CP41229 1560 aa28.71■■■□□ 2.19
UPF3A-203ENST00000474056 ZNF518AQ6AHZ1 1483 aa28.7■■■□□ 2.18
UPF3A-203ENST00000474056 EHBP1L1Q8N3D4 1523 aa28.69■■■□□ 2.18
UPF3A-203ENST00000474056 ARHGEF12Q9NZN5 1544 aa28.67■■■□□ 2.18
UPF3A-203ENST00000474056 GPATCH8Q9UKJ3 1502 aaKnown RBP28.67■■■□□ 2.18
UPF3A-203ENST00000474056 ARID4BQ4LE39 1312 aaPredicted RBP28.67■■■□□ 2.18
UPF3A-203ENST00000474056 VPS8Q8N3P4 1428 aa28.66■■■□□ 2.18
UPF3A-203ENST00000474056 SAMD9LQ8IVG5 1584 aa28.65■■■□□ 2.18
UPF3A-203ENST00000474056 HECW2Q9P2P5 1572 aa28.64■■■□□ 2.18
UPF3A-203ENST00000474056 MADDQ8WXG6 1647 aa28.64■■■□□ 2.18
UPF3A-203ENST00000474056 AFAP1Q8N556 730 aa28.63■■■□□ 2.17
UPF3A-203ENST00000474056 TIAM1Q13009 1591 aa28.62■■■□□ 2.17
UPF3A-203ENST00000474056 TRAPPC8Q9Y2L5 1435 aa28.61■■■□□ 2.17
UPF3A-203ENST00000474056 CCNB3Q8WWL7 1395 aa28.6■■■□□ 2.17
UPF3A-203ENST00000474056 ATP10AO60312 1499 aa28.58■■■□□ 2.17
UPF3A-203ENST00000474056 SYCP2Q9BX26 1530 aa28.58■■■□□ 2.17
UPF3A-203ENST00000474056 RIMS1Q86UR5 1692 aaKnown RBP28.58■■■□□ 2.16
UPF3A-203ENST00000474056 ZNF777Q9ULD5 760 aaPredicted RBP28.57■■■□□ 2.16
UPF3A-203ENST00000474056 C9orf84Q5VXU9 1444 aa28.57■■■□□ 2.16
UPF3A-203ENST00000474056 DIP2CQ9Y2E4 1556 aa28.57■■■□□ 2.16
UPF3A-203ENST00000474056 ABCA6Q8N139 1617 aa28.57■■■□□ 2.16
UPF3A-203ENST00000474056 SUPT6HQ7KZ85 1726 aaKnown RBP28.57■■■□□ 2.16
UPF3A-203ENST00000474056 PTPRMP28827 1452 aa28.56■■■□□ 2.16
UPF3A-203ENST00000474056 MLH3Q9UHC1 1453 aa28.54■■■□□ 2.16
UPF3A-203ENST00000474056 KIDINS220Q9ULH0 1771 aa28.54■■■□□ 2.16
UPF3A-203ENST00000474056 CFDP1Q9UEE9 299 aaPredicted RBP28.53■■■□□ 2.16
UPF3A-203ENST00000474056 FER1L4A9Z1Z3 1794 aa28.52■■■□□ 2.16
UPF3A-203ENST00000474056 MYT1LQ9UL68 1186 aa28.51■■■□□ 2.15
UPF3A-203ENST00000474056 NCOA2Q15596 1464 aa28.49■■■□□ 2.15
UPF3A-203ENST00000474056 REREQ9P2R6 1566 aa28.48■■■□□ 2.15
UPF3A-203ENST00000474056 PLEKHH2Q8IVE3 1493 aa28.47■■■□□ 2.15
UPF3A-203ENST00000474056 KIAA1107Q9UPP5 1409 aa28.47■■■□□ 2.15
UPF3A-203ENST00000474056 HNRNPMP52272 730 aaKnown RBP eCLIP28.46■■■□□ 2.153e-6■■■■□ 21.2
UPF3A-203ENST00000474056 MLECQ14165 292 aa28.46■■■□□ 2.15
UPF3A-203ENST00000474056 LRRC9Q6ZRR7 1453 aa28.46■■■□□ 2.15
UPF3A-203ENST00000474056 MAP3K1Q13233 1512 aa28.44■■■□□ 2.14
UPF3A-203ENST00000474056 INO80Q9ULG1 1556 aaPredicted RBP28.41■■■□□ 2.14
UPF3A-203ENST00000474056 ZNF644Q9H582 1327 aaPredicted RBP28.41■■■□□ 2.14
UPF3A-203ENST00000474056 ATP7AQ04656 1500 aa28.39■■■□□ 2.14
UPF3A-203ENST00000474056 KANK4Q5T7N3 995 aaPredicted RBP28.37■■■□□ 2.13
UPF3A-203ENST00000474056 SPAG9O60271 1321 aaKnown RBP28.37■■■□□ 2.13
UPF3A-203ENST00000474056 MBD5Q9P267 1494 aa28.36■■■□□ 2.13
UPF3A-203ENST00000474056 AGLP35573 1532 aa28.36■■■□□ 2.13
UPF3A-203ENST00000474056 CAMSAP2Q08AD1 1489 aa28.34■■■□□ 2.13
UPF3A-203ENST00000474056 PLPPR3Q6T4P5 718 aa28.31■■■□□ 2.12
UPF3A-203ENST00000474056 ADGBQ8N7X0 1667 aa28.28■■■□□ 2.12
UPF3A-203ENST00000474056 PLXNC1O60486 1568 aa28.28■■■□□ 2.12
UPF3A-203ENST00000474056 CCDC141Q6ZP82 1450 aa28.26■■■□□ 2.11
UPF3A-203ENST00000474056 A2MP01023 1474 aa28.24■■■□□ 2.11
UPF3A-203ENST00000474056 LMTK3Q96Q04 1460 aa28.24■■■□□ 2.11
UPF3A-203ENST00000474056 ARHGEF5Q12774 1597 aa28.23■■■□□ 2.11
UPF3A-203ENST00000474056 APLP2Q06481 763 aa28.22■■■□□ 2.11
UPF3A-203ENST00000474056 RTEL1-TNFRSF6BF6WH68 1400 aa28.21■■■□□ 2.11
UPF3A-203ENST00000474056 MYOM3Q5VTT5 1437 aa28.21■■■□□ 2.11
UPF3A-203ENST00000474056 C3P01024 1663 aa28.21■■■□□ 2.11
UPF3A-203ENST00000474056 CEBPAP49715 358 aaPredicted RBP28.18■■■□□ 2.1
UPF3A-203ENST00000474056 MIA2Q96PC5 1412 aa28.17■■■□□ 2.1
UPF3A-203ENST00000474056 PREX1Q8TCU6 1659 aa28.16■■■□□ 2.1
UPF3A-203ENST00000474056 SETD1BQ9UPS6 1966 aaKnown RBP28.15■■■□□ 2.1
UPF3A-203ENST00000474056 RSPH4AQ5TD94 716 aa28.15■■■□□ 2.1
UPF3A-203ENST00000474056 MROH2AA6NES4 1674 aa28.13■■■□□ 2.09
UPF3A-203ENST00000474056 ESF1Q9H501 851 aaKnown RBP28.12■■■□□ 2.09
UPF3A-203ENST00000474056 CLTCQ00610 1675 aaKnown RBP28.12■■■□□ 2.09
UPF3A-203ENST00000474056 CNTLNQ9NXG0 1405 aa28.11■■■□□ 2.09
UPF3A-203ENST00000474056 MAST1Q9Y2H9 1570 aa28.1■■■□□ 2.09
UPF3A-203ENST00000474056 PTPN23Q9H3S7 1636 aa28.1■■■□□ 2.09
UPF3A-203ENST00000474056 DHX29Q7Z478 1369 aaKnown RBP28.09■■■□□ 2.09
UPF3A-203ENST00000474056 TSPY4P0CV99 314 aa28.06■■■□□ 2.08
UPF3A-203ENST00000474056 TSPY10P0CW01 314 aa28.06■■■□□ 2.08
UPF3A-203ENST00000474056 HSPA2P54652 639 aa28.06■■■□□ 2.08
UPF3A-203ENST00000474056 CROCC2H7BZ55 1655 aa28.05■■■□□ 2.08
UPF3A-203ENST00000474056 GGT6Q6P531 493 aa28.05■■■□□ 2.08
UPF3A-203ENST00000474056 FGD6Q6ZV73 1430 aa28.01■■■□□ 2.08
UPF3A-203ENST00000474056 UHRF1BP1Q6BDS2 1440 aa28■■■□□ 2.07
UPF3A-203ENST00000474056 ZMYM3Q14202 1370 aa27.99■■■□□ 2.07
UPF3A-203ENST00000474056 TCOF1Q13428 1488 aaKnown RBP27.99■■■□□ 2.07
UPF3A-203ENST00000474056 DNMT1P26358 1616 aaKnown RBP27.97■■■□□ 2.07
UPF3A-203ENST00000474056 KIF3BO15066 747 aa27.97■■■□□ 2.07
UPF3A-203ENST00000474056 SHANK2Q9UPX8 1470 aa27.95■■■□□ 2.06
UPF3A-203ENST00000474056 ABCC5O15440 1437 aa27.94■■■□□ 2.06
UPF3A-203ENST00000474056 PPP6R1Q9UPN7 881 aa27.94■■■□□ 2.06
UPF3A-203ENST00000474056 DAPK1P53355 1430 aa27.92■■■□□ 2.06
UPF3A-203ENST00000474056 NPATQ14207 1427 aa27.92■■■□□ 2.06
UPF3A-203ENST00000474056 EIF2AK4Q9P2K8 1649 aaKnown RBP27.92■■■□□ 2.06
UPF3A-203ENST00000474056 RNF17Q9BXT8 1623 aaKnown RBP27.92■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms