RNA–Protein interactions for RNA: ENST00000474020.5

ATPAF1-204, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 2

Gene ATPAF1, Length 535 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-204ENST00000474020 MMRN1Q13201 1228 aa10.4□□□□□ -0.74
ATPAF1-204ENST00000474020 NKX1-1Q15270 411 aaPredicted RBP10.4□□□□□ -0.74
ATPAF1-204ENST00000474020 ZCCHC6Q5VYS8 1495 aaKnown RBP10.38□□□□□ -0.75
ATPAF1-204ENST00000474020 PPP1R37O75864 691 aa10.38□□□□□ -0.75
ATPAF1-204ENST00000474020 RTN4Q9NQC3 1192 aaKnown RBP10.36□□□□□ -0.75
ATPAF1-204ENST00000474020 RYDENQ9NUL5 291 aaKnown RBP10.36□□□□□ -0.75
ATPAF1-204ENST00000474020 HOXB3P14651 431 aaPredicted RBP10.34□□□□□ -0.75
ATPAF1-204ENST00000474020 DOK7Q18PE1 504 aa10.32□□□□□ -0.76
ATPAF1-204ENST00000474020 SPNS2Q8IVW8 549 aa10.32□□□□□ -0.76
ATPAF1-204ENST00000474020 KIF3CO14782 793 aa10.3□□□□□ -0.76
ATPAF1-204ENST00000474020 RIMBP2O15034 1052 aa10.29□□□□□ -0.76
ATPAF1-204ENST00000474020 C2orf72A6NCS6 295 aa10.28□□□□□ -0.76
ATPAF1-204ENST00000474020 ZNF710Q8N1W2 664 aa10.28□□□□□ -0.76
ATPAF1-204ENST00000474020 GTPBP6O43824 516 aaPredicted RBP10.27□□□□□ -0.77
ATPAF1-204ENST00000474020 TMC2Q8TDI7 906 aa10.26□□□□□ -0.77
ATPAF1-204ENST00000474020 MARVELD3Q96A59 401 aa10.26□□□□□ -0.77
ATPAF1-204ENST00000474020 HOXB1P14653 301 aaPredicted RBP10.24□□□□□ -0.77
ATPAF1-204ENST00000474020 EMP3P54852 163 aa10.24□□□□□ -0.77
ATPAF1-204ENST00000474020 ZSWIM6Q9HCJ5 1215 aa10.24□□□□□ -0.77
ATPAF1-204ENST00000474020 SHROOM4Q9ULL8 1493 aa10.23□□□□□ -0.77
ATPAF1-204ENST00000474020 BBXQ8WY36 941 aaPredicted RBP10.2□□□□□ -0.78
ATPAF1-204ENST00000474020 GPR153Q6NV75 609 aa10.19□□□□□ -0.78
ATPAF1-204ENST00000474020 GPHNQ9NQX3 736 aaPredicted RBP10.19□□□□□ -0.78
ATPAF1-204ENST00000474020 DCAF1Q9Y4B6 1507 aa10.18□□□□□ -0.78
ATPAF1-204ENST00000474020 SLC34A2O95436 690 aa10.17□□□□□ -0.78
ATPAF1-204ENST00000474020 FOXK1P85037 733 aa10.17□□□□□ -0.78
ATPAF1-204ENST00000474020 FAM205CA6NFA0 338 aa10.16□□□□□ -0.78
ATPAF1-204ENST00000474020 HS3ST6Q96QI5 342 aa10.15□□□□□ -0.78
ATPAF1-204ENST00000474020 ARSIQ5FYB1 569 aa10.14□□□□□ -0.79
ATPAF1-204ENST00000474020 CRISPLD2Q9H0B8 497 aa10.14□□□□□ -0.79
ATPAF1-204ENST00000474020 POTEB3A0JP26 581 aa10.13□□□□□ -0.79
ATPAF1-204ENST00000474020 DSG2Q14126 1118 aa10.13□□□□□ -0.79
ATPAF1-204ENST00000474020 POTEBQ6S5H4 581 aa10.13□□□□□ -0.79
ATPAF1-204ENST00000474020 PLPP6Q8IY26 295 aa10.13□□□□□ -0.79
ATPAF1-204ENST00000474020 ERBB3P21860 1342 aa10.11□□□□□ -0.79
ATPAF1-204ENST00000474020 PDE4AP27815 886 aa10.11□□□□□ -0.79
ATPAF1-204ENST00000474020 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.11□□□□□ -0.79
ATPAF1-204ENST00000474020 NCKAP5LQ9HCH0 1330 aa10.1□□□□□ -0.79
ATPAF1-204ENST00000474020 KHSRPQ92945 711 aaKnown RBP eCLIP10.1□□□□□ -0.79
ATPAF1-204ENST00000474020 PCDHGA4Q9Y5G9 962 aa10.1□□□□□ -0.79
ATPAF1-204ENST00000474020 SPRYD3Q8NCJ5 442 aa10.08□□□□□ -0.8
ATPAF1-204ENST00000474020 PTCD2Q8WV60 388 aaKnown RBP10.08□□□□□ -0.8
ATPAF1-204ENST00000474020 VARS2Q5ST30 1063 aaKnown RBP10.07□□□□□ -0.8
ATPAF1-204ENST00000474020 PPP1R15BQ5SWA1 713 aa10.07□□□□□ -0.8
ATPAF1-204ENST00000474020 NUDT7P0C024 238 aa10.06□□□□□ -0.8
ATPAF1-204ENST00000474020 ZNF316A6NFI3 1004 aaPredicted RBP10.05□□□□□ -0.8
ATPAF1-204ENST00000474020 MFSD10Q14728 455 aa10.04□□□□□ -0.8
ATPAF1-204ENST00000474020 CADPS2Q86UW7 1296 aa10.04□□□□□ -0.8
ATPAF1-204ENST00000474020 LARP6Q9BRS8 491 aaKnown RBP10.04□□□□□ -0.8
ATPAF1-204ENST00000474020 DDX27Q96GQ7 796 aaKnown RBP10.03□□□□□ -0.8
ATPAF1-204ENST00000474020 SUPT5HO00267 1087 aaKnown RBP10.02□□□□□ -0.81
ATPAF1-204ENST00000474020 TBC1D12O60347 775 aa10.02□□□□□ -0.81
ATPAF1-204ENST00000474020 ZNF687Q8N1G0 1237 aa10.02□□□□□ -0.81
ATPAF1-204ENST00000474020 KRTAP3-3Q9BYR6 98 aa10.02□□□□□ -0.81
ATPAF1-204ENST00000474020 KRTAP3-2Q9BYR7 98 aa10.02□□□□□ -0.81
ATPAF1-204ENST00000474020 PAXIP1Q6ZW49 1069 aaPredicted RBP10.01□□□□□ -0.81
ATPAF1-204ENST00000474020 KDM4FA0A1W2PPD8 638 aa10□□□□□ -0.81
ATPAF1-204ENST00000474020 OXER1Q8TDS5 423 aa10□□□□□ -0.81
ATPAF1-204ENST00000474020 CFAP44Q96MT7 982 aa10□□□□□ -0.81
ATPAF1-204ENST00000474020 LHX6Q9UPM6 363 aa10□□□□□ -0.81
ATPAF1-204ENST00000474020 MYO15BQ96JP2 1530 aa9.98□□□□□ -0.81
ATPAF1-204ENST00000474020 UPF1Q92900 1129 aaKnown RBP eCLIP9.97□□□□□ -0.81
ATPAF1-204ENST00000474020 PSDA5PKW4 1024 aaPredicted RBP9.96□□□□□ -0.82
ATPAF1-204ENST00000474020 PBX2P40425 430 aa9.91□□□□□ -0.82
ATPAF1-204ENST00000474020 EMILIN3Q9NT22 766 aa9.91□□□□□ -0.82
ATPAF1-204ENST00000474020 CAMK2BQ13554 666 aa9.9□□□□□ -0.82
ATPAF1-204ENST00000474020 MAP3K9P80192 1104 aa9.88□□□□□ -0.83
ATPAF1-204ENST00000474020 EVI5O60447 810 aa9.87□□□□□ -0.83
ATPAF1-204ENST00000474020 PPP4R3BQ5MIZ7 849 aa9.87□□□□□ -0.83
ATPAF1-204ENST00000474020 POTEEQ6S8J3 1075 aa9.87□□□□□ -0.83
ATPAF1-204ENST00000474020 ANO8Q9HCE9 1232 aaPredicted RBP9.87□□□□□ -0.83
ATPAF1-204ENST00000474020 ABCC9O60706 1549 aa9.86□□□□□ -0.83
ATPAF1-204ENST00000474020 NACADO15069 1562 aa9.85□□□□□ -0.83
ATPAF1-204ENST00000474020 LSM11P83369 360 aaKnown RBP eCLIP9.84□□□□□ -0.83
ATPAF1-204ENST00000474020 ARHGAP33O14559 1287 aa9.83□□□□□ -0.84
ATPAF1-204ENST00000474020 PTGER2P43116 358 aa9.83□□□□□ -0.84
ATPAF1-204ENST00000474020 ZNF454Q8N9F8 522 aa9.83□□□□□ -0.84
ATPAF1-204ENST00000474020 AXIN2Q9Y2T1 843 aa9.83□□□□□ -0.84
ATPAF1-204ENST00000474020 FOSBP53539 338 aa9.82□□□□□ -0.84
ATPAF1-204ENST00000474020 ANKRD13DQ6ZTN6 518 aa9.82□□□□□ -0.84
ATPAF1-204ENST00000474020 DPYSL4O14531 572 aa9.8□□□□□ -0.84
ATPAF1-204ENST00000474020 JPH4Q96JJ6 628 aa9.8□□□□□ -0.84
ATPAF1-204ENST00000474020 KCNH8Q96L42 1107 aa9.8□□□□□ -0.84
ATPAF1-204ENST00000474020 WDR70Q9NW82 654 aa9.8□□□□□ -0.84
ATPAF1-204ENST00000474020 SCRIBQ14160 1630 aa9.79□□□□□ -0.84
ATPAF1-204ENST00000474020 E2F4Q16254 413 aa9.79□□□□□ -0.84
ATPAF1-204ENST00000474020 BCL2L12Q9HB09 334 aa9.78□□□□□ -0.84
ATPAF1-204ENST00000474020 TSHZ2Q9NRE2 1034 aa9.78□□□□□ -0.84
ATPAF1-204ENST00000474020 PSEN2P49810 448 aa9.77□□□□□ -0.85
ATPAF1-204ENST00000474020 ZDHHC16Q969W1 377 aa9.76□□□□□ -0.85
ATPAF1-204ENST00000474020 MYT1LQ9UL68 1186 aa9.76□□□□□ -0.85
ATPAF1-204ENST00000474020 DMRTA1Q5VZB9 504 aa9.75□□□□□ -0.85
ATPAF1-204ENST00000474020 KCNK17Q96T54 332 aa9.75□□□□□ -0.85
ATPAF1-204ENST00000474020 TK2O00142 265 aa9.74□□□□□ -0.85
ATPAF1-204ENST00000474020 PHF14O94880 888 aa9.74□□□□□ -0.85
ATPAF1-204ENST00000474020 ADGRD1Q6QNK2 874 aa9.74□□□□□ -0.85
ATPAF1-204ENST00000474020 RNF166Q96A37 237 aaPredicted RBP9.74□□□□□ -0.85
ATPAF1-204ENST00000474020 ARIH1Q9Y4X5 557 aaPredicted RBP9.74□□□□□ -0.85
ATPAF1-204ENST00000474020 PLCB2Q00722 1185 aa9.73□□□□□ -0.85
ATPAF1-204ENST00000474020 PDIA6Q15084 440 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms