RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 MADDQ8WXG6 1647 aa30.75■■■□□ 2.51
CCDC88B-206ENST00000473405 CCDC18Q5T9S5 1454 aa30.75■■■□□ 2.51
CCDC88B-206ENST00000473405 CLIP1P30622 1438 aa30.73■■■□□ 2.51
CCDC88B-206ENST00000473405 FYCO1Q9BQS8 1478 aa30.72■■■□□ 2.51
CCDC88B-206ENST00000473405 SCAPERQ9BY12 1400 aa30.72■■■□□ 2.51
CCDC88B-206ENST00000473405 YEATS2Q9ULM3 1422 aa30.71■■■□□ 2.51
CCDC88B-206ENST00000473405 PTPRMP28827 1452 aa30.7■■■□□ 2.51
CCDC88B-206ENST00000473405 MAGI2Q86UL8 1455 aa30.7■■■□□ 2.51
CCDC88B-206ENST00000473405 CDC42BPBQ9Y5S2 1711 aa30.7■■■□□ 2.51
CCDC88B-206ENST00000473405 ARHGAP5Q13017 1502 aa30.68■■■□□ 2.5
CCDC88B-206ENST00000473405 PREX2Q70Z35 1606 aa30.67■■■□□ 2.5
CCDC88B-206ENST00000473405 EFCAB2Q5VUJ9 269 aa30.64■■■□□ 2.5
CCDC88B-206ENST00000473405 ARID4BQ4LE39 1312 aaPredicted RBP30.64■■■□□ 2.5
CCDC88B-206ENST00000473405 RIMS1Q86UR5 1692 aaKnown RBP30.64■■■□□ 2.5
CCDC88B-206ENST00000473405 KDM5CP41229 1560 aa30.61■■■□□ 2.49
CCDC88B-206ENST00000473405 CDC42BPAQ5VT25 1732 aa30.61■■■□□ 2.49
CCDC88B-206ENST00000473405 ZNF518AQ6AHZ1 1483 aa30.59■■■□□ 2.49
CCDC88B-206ENST00000473405 ABCC1P33527 1531 aa30.55■■■□□ 2.48
CCDC88B-206ENST00000473405 ITSN2Q9NZM3 1697 aa30.54■■■□□ 2.48
CCDC88B-206ENST00000473405 FER1L4A9Z1Z3 1794 aa30.52■■■□□ 2.48
CCDC88B-206ENST00000473405 ATP10AO60312 1499 aa30.51■■■□□ 2.48
CCDC88B-206ENST00000473405 C9orf84Q5VXU9 1444 aa30.5■■■□□ 2.47
CCDC88B-206ENST00000473405 ARHGEF12Q9NZN5 1544 aa30.49■■■□□ 2.47
CCDC88B-206ENST00000473405 DIP2CQ9Y2E4 1556 aa30.49■■■□□ 2.47
CCDC88B-206ENST00000473405 ABCA6Q8N139 1617 aa30.47■■■□□ 2.47
CCDC88B-206ENST00000473405 AFAP1Q8N556 730 aa30.46■■■□□ 2.47
CCDC88B-206ENST00000473405 SAMD9LQ8IVG5 1584 aa30.43■■■□□ 2.46
CCDC88B-206ENST00000473405 LMTK3Q96Q04 1460 aa30.43■■■□□ 2.46
CCDC88B-206ENST00000473405 REREQ9P2R6 1566 aa30.42■■■□□ 2.46
CCDC88B-206ENST00000473405 CEP162Q5TB80 1403 aa30.42■■■□□ 2.46
CCDC88B-206ENST00000473405 TRAPPC8Q9Y2L5 1435 aa30.42■■■□□ 2.46
CCDC88B-206ENST00000473405 MLH3Q9UHC1 1453 aa30.42■■■□□ 2.46
CCDC88B-206ENST00000473405 GPATCH8Q9UKJ3 1502 aaKnown RBP30.4■■■□□ 2.46
CCDC88B-206ENST00000473405 KIDINS220Q9ULH0 1771 aa30.38■■■□□ 2.45
CCDC88B-206ENST00000473405 MLECQ14165 292 aa30.37■■■□□ 2.45
CCDC88B-206ENST00000473405 SYCP2Q9BX26 1530 aa30.35■■■□□ 2.45
CCDC88B-206ENST00000473405 EHBP1L1Q8N3D4 1523 aa30.32■■■□□ 2.44
CCDC88B-206ENST00000473405 MTUS2Q5JR59 1369 aa30.3■■■□□ 2.44
CCDC88B-206ENST00000473405 TIAM1Q13009 1591 aa30.3■■■□□ 2.44
CCDC88B-206ENST00000473405 AGLP35573 1532 aa30.28■■■□□ 2.44
CCDC88B-206ENST00000473405 MYT1LQ9UL68 1186 aa30.26■■■□□ 2.43
CCDC88B-206ENST00000473405 CCNB3Q8WWL7 1395 aa30.26■■■□□ 2.43
CCDC88B-206ENST00000473405 PLPPR3Q6T4P5 718 aa30.25■■■□□ 2.43
CCDC88B-206ENST00000473405 INO80Q9ULG1 1556 aaPredicted RBP30.24■■■□□ 2.43
CCDC88B-206ENST00000473405 ZNF777Q9ULD5 760 aaPredicted RBP30.24■■■□□ 2.43
CCDC88B-206ENST00000473405 PREX1Q8TCU6 1659 aa30.23■■■□□ 2.43
CCDC88B-206ENST00000473405 KIAA1107Q9UPP5 1409 aa30.22■■■□□ 2.43
CCDC88B-206ENST00000473405 ILDR1Q86SU0 546 aaPredicted RBP30.22■■■□□ 2.43
CCDC88B-206ENST00000473405 PLEKHH2Q8IVE3 1493 aa30.22■■■□□ 2.43
CCDC88B-206ENST00000473405 ATP7AQ04656 1500 aa30.2■■■□□ 2.42
CCDC88B-206ENST00000473405 CFDP1Q9UEE9 299 aaPredicted RBP30.19■■■□□ 2.42
CCDC88B-206ENST00000473405 C3P01024 1663 aa30.18■■■□□ 2.42
CCDC88B-206ENST00000473405 HNRNPMP52272 730 aaKnown RBP eCLIP30.17■■■□□ 2.42
CCDC88B-206ENST00000473405 SUPT6HQ7KZ85 1726 aaKnown RBP30.15■■■□□ 2.42
CCDC88B-206ENST00000473405 PLXNC1O60486 1568 aa30.15■■■□□ 2.42
CCDC88B-206ENST00000473405 HSPA2P54652 639 aa30.14■■■□□ 2.42
CCDC88B-206ENST00000473405 CEBPAP49715 358 aaPredicted RBP30.13■■■□□ 2.41
CCDC88B-206ENST00000473405 SPAG9O60271 1321 aaKnown RBP30.13■■■□□ 2.41
CCDC88B-206ENST00000473405 LOC105371045A0A1W2PR82 267 aa30.11■■■□□ 2.41
CCDC88B-206ENST00000473405 VPS8Q8N3P4 1428 aa30.1■■■□□ 2.41
CCDC88B-206ENST00000473405 MBD5Q9P267 1494 aa30.1■■■□□ 2.41
CCDC88B-206ENST00000473405 NCOA2Q15596 1464 aa30.09■■■□□ 2.41
CCDC88B-206ENST00000473405 ZNF644Q9H582 1327 aaPredicted RBP30.09■■■□□ 2.41
CCDC88B-206ENST00000473405 ADGBQ8N7X0 1667 aa30.07■■■□□ 2.41
CCDC88B-206ENST00000473405 MROH2AA6NES4 1674 aa30.07■■■□□ 2.4
CCDC88B-206ENST00000473405 SETD1BQ9UPS6 1966 aaKnown RBP30.06■■■□□ 2.4
CCDC88B-206ENST00000473405 A2MP01023 1474 aa30.04■■■□□ 2.4
CCDC88B-206ENST00000473405 CNTLNQ9NXG0 1405 aa30.03■■■□□ 2.4
CCDC88B-206ENST00000473405 CAMSAP2Q08AD1 1489 aa30.01■■■□□ 2.4
CCDC88B-206ENST00000473405 UHRF1BP1Q6BDS2 1440 aa30■■■□□ 2.39
CCDC88B-206ENST00000473405 STRCQ7RTU9 1775 aa30■■■□□ 2.39
CCDC88B-206ENST00000473405 LRRC9Q6ZRR7 1453 aa29.99■■■□□ 2.39
CCDC88B-206ENST00000473405 CLTCQ00610 1675 aaKnown RBP29.99■■■□□ 2.39
CCDC88B-206ENST00000473405 ESF1Q9H501 851 aaKnown RBP29.96■■■□□ 2.39
CCDC88B-206ENST00000473405 CCDC141Q6ZP82 1450 aa29.95■■■□□ 2.39
CCDC88B-206ENST00000473405 MAP3K1Q13233 1512 aa29.95■■■□□ 2.38
CCDC88B-206ENST00000473405 RTEL1-TNFRSF6BF6WH68 1400 aa29.95■■■□□ 2.38
CCDC88B-206ENST00000473405 ARHGEF5Q12774 1597 aa29.92■■■□□ 2.38
CCDC88B-206ENST00000473405 NPATQ14207 1427 aa29.88■■■□□ 2.37
CCDC88B-206ENST00000473405 FBXO41Q8TF61 875 aa29.87■■■□□ 2.37
CCDC88B-206ENST00000473405 ZMYM3Q14202 1370 aa29.87■■■□□ 2.37
CCDC88B-206ENST00000473405 MYO3AQ8NEV4 1616 aa29.84■■■□□ 2.37
CCDC88B-206ENST00000473405 DHX29Q7Z478 1369 aaKnown RBP29.83■■■□□ 2.37
CCDC88B-206ENST00000473405 KANK4Q5T7N3 995 aaPredicted RBP29.83■■■□□ 2.37
CCDC88B-206ENST00000473405 ZNF142P52746 1687 aaPredicted RBP29.82■■■□□ 2.36
CCDC88B-206ENST00000473405 GGT6Q6P531 493 aa29.8■■■□□ 2.36
CCDC88B-206ENST00000473405 PTPRKQ15262 1439 aa29.79■■■□□ 2.36
CCDC88B-206ENST00000473405 MAST1Q9Y2H9 1570 aa29.78■■■□□ 2.36
CCDC88B-206ENST00000473405 MYOM3Q5VTT5 1437 aa29.78■■■□□ 2.36
CCDC88B-206ENST00000473405 RSPH4AQ5TD94 716 aa29.77■■■□□ 2.36
CCDC88B-206ENST00000473405 NCOA1Q15788 1441 aa29.76■■■□□ 2.35
CCDC88B-206ENST00000473405 MIA2Q96PC5 1412 aa29.74■■■□□ 2.35
CCDC88B-206ENST00000473405 PPP6R1Q9UPN7 881 aa29.74■■■□□ 2.35
CCDC88B-206ENST00000473405 FAM135AQ9P2D6 1515 aa29.74■■■□□ 2.35
CCDC88B-206ENST00000473405 CAMSAP1Q5T5Y3 1602 aa29.74■■■□□ 2.35
CCDC88B-206ENST00000473405 CEP170BQ9Y4F5 1589 aaPredicted RBP29.73■■■□□ 2.35
CCDC88B-206ENST00000473405 KDM5DQ9BY66 1539 aa29.72■■■□□ 2.35
CCDC88B-206ENST00000473405 PTPRTO14522 1441 aa29.71■■■□□ 2.35
CCDC88B-206ENST00000473405 DMRT2Q9Y5R5 561 aa29.71■■■□□ 2.35
CCDC88B-206ENST00000473405 RNF17Q9BXT8 1623 aaKnown RBP29.69■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 221.1 ms