RNA–Protein interactions for RNA: ENST00000471538.1

SPEN-204, Transcript of spen family transcriptional repressor, humanhuman

TSL 2

Gene SPEN, Length 1,404 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPEN-204ENST00000471538 CCNB3Q8WWL7 1395 aa9.65□□□□□ -0.86
SPEN-204ENST00000471538 NUP160Q12769 1436 aa9.65□□□□□ -0.87
SPEN-204ENST00000471538 SPDYE1Q8NFV5 336 aaPredicted RBP9.64□□□□□ -0.87
SPEN-204ENST00000471538 FMN1Q68DA7 1419 aa9.63□□□□□ -0.87
SPEN-204ENST00000471538 KDM4FA0A1W2PPD8 638 aa9.63□□□□□ -0.87
SPEN-204ENST00000471538 LRRIQ1Q96JM4 1722 aa9.62□□□□□ -0.87
SPEN-204ENST00000471538 ILDR1Q86SU0 546 aaPredicted RBP9.62□□□□□ -0.87
SPEN-204ENST00000471538 PHLDB1Q86UU1 1377 aa9.62□□□□□ -0.87
SPEN-204ENST00000471538 CLEC11AQ9Y240 323 aa9.61□□□□□ -0.87
SPEN-204ENST00000471538 DHX57Q6P158 1386 aaKnown RBP9.61□□□□□ -0.87
SPEN-204ENST00000471538 P3H3Q8IVL6 736 aa9.59□□□□□ -0.87
SPEN-204ENST00000471538 CLSPNQ9HAW4 1339 aa9.59□□□□□ -0.87
SPEN-204ENST00000471538 IQGAP2Q13576 1575 aa9.59□□□□□ -0.87
SPEN-204ENST00000471538 ABCC10Q5T3U5 1492 aa9.58□□□□□ -0.88
SPEN-204ENST00000471538 SSUH2Q9Y2M2 353 aa9.58□□□□□ -0.88
SPEN-204ENST00000471538 DIP2BQ9P265 1576 aa9.58□□□□□ -0.88
SPEN-204ENST00000471538 UGGT2Q9NYU1 1516 aa9.57□□□□□ -0.88
SPEN-204ENST00000471538 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.57□□□□□ -0.88
SPEN-204ENST00000471538 MKRN4PQ13434 485 aaPredicted RBP9.56□□□□□ -0.88
SPEN-204ENST00000471538 PRG4Q92954 1404 aaPredicted RBP9.56□□□□□ -0.88
SPEN-204ENST00000471538 POTEIP0CG38 1075 aa9.56□□□□□ -0.88
SPEN-204ENST00000471538 FAM69CQ0P6D2 419 aa9.56□□□□□ -0.88
SPEN-204ENST00000471538 MAPKBP1O60336 1514 aa9.55□□□□□ -0.88
SPEN-204ENST00000471538 ADCY10Q96PN6 1610 aa9.54□□□□□ -0.88
SPEN-204ENST00000471538 EHBP1L1Q8N3D4 1523 aa9.54□□□□□ -0.88
SPEN-204ENST00000471538 KDM6BO15054 1643 aa9.53□□□□□ -0.88
SPEN-204ENST00000471538 CHADLQ6NUI6 762 aa9.53□□□□□ -0.88
SPEN-204ENST00000471538 CCDC18Q5T9S5 1454 aa9.53□□□□□ -0.88
SPEN-204ENST00000471538 HECW1Q76N89 1606 aa9.53□□□□□ -0.88
SPEN-204ENST00000471538 MAGI3Q5TCQ9 1506 aa9.52□□□□□ -0.88
SPEN-204ENST00000471538 TSPOAP1O95153 1857 aa9.52□□□□□ -0.89
SPEN-204ENST00000471538 FGD6Q6ZV73 1430 aa9.52□□□□□ -0.89
SPEN-204ENST00000471538 SUPT6HQ7KZ85 1726 aaKnown RBP9.52□□□□□ -0.89
SPEN-204ENST00000471538 RAB3GAP2Q9H2M9 1393 aa9.52□□□□□ -0.89
SPEN-204ENST00000471538 KIAA0586Q9BVV6 1533 aa9.52□□□□□ -0.89
SPEN-204ENST00000471538 KIAA0556O60303 1618 aa9.51□□□□□ -0.89
SPEN-204ENST00000471538 JPH4Q96JJ6 628 aa9.51□□□□□ -0.89
SPEN-204ENST00000471538 SETD5Q9C0A6 1442 aa9.51□□□□□ -0.89
SPEN-204ENST00000471538 DISP1Q96F81 1524 aa9.51□□□□□ -0.89
SPEN-204ENST00000471538 ZNF692Q9BU19 519 aaPredicted RBP9.5□□□□□ -0.89
SPEN-204ENST00000471538 NCOA2Q15596 1464 aa9.5□□□□□ -0.89
SPEN-204ENST00000471538 ZNF316A6NFI3 1004 aaPredicted RBP9.49□□□□□ -0.89
SPEN-204ENST00000471538 EPRSP07814 1512 aaKnown RBP9.49□□□□□ -0.89
SPEN-204ENST00000471538 ATP1B4Q9UN42 357 aaPredicted RBP9.48□□□□□ -0.89
SPEN-204ENST00000471538 MTUS2Q5JR59 1369 aa9.48□□□□□ -0.89
SPEN-204ENST00000471538 MYOM3Q5VTT5 1437 aa9.48□□□□□ -0.89
SPEN-204ENST00000471538 DIEXFQ68CQ4 756 aaKnown RBP9.48□□□□□ -0.89
SPEN-204ENST00000471538 PPRC1Q5VV67 1664 aaKnown RBP9.47□□□□□ -0.89
SPEN-204ENST00000471538 TCOF1Q13428 1488 aaKnown RBP9.47□□□□□ -0.89
SPEN-204ENST00000471538 ITGAEP38570 1179 aa9.46□□□□□ -0.9
SPEN-204ENST00000471538 PTPN23Q9H3S7 1636 aa9.46□□□□□ -0.9
SPEN-204ENST00000471538 PTPRKQ15262 1439 aa9.45□□□□□ -0.9
SPEN-204ENST00000471538 FAM50AQ14320 339 aaKnown RBP9.45□□□□□ -0.9
SPEN-204ENST00000471538 CDK13Q14004 1512 aaKnown RBP9.45□□□□□ -0.9
SPEN-204ENST00000471538 ADGRL1O94910 1474 aa9.44□□□□□ -0.9
SPEN-204ENST00000471538 RAPGEF6Q8TEU7 1601 aa9.44□□□□□ -0.9
SPEN-204ENST00000471538 NPM1P06748 294 aaKnown RBP eCLIP9.44□□□□□ -0.9
SPEN-204ENST00000471538 HFM1A2PYH4 1435 aa9.43□□□□□ -0.9
SPEN-204ENST00000471538 NUP153P49790 1475 aaKnown RBP9.43□□□□□ -0.9
SPEN-204ENST00000471538 HECW2Q9P2P5 1572 aa9.42□□□□□ -0.9
SPEN-204ENST00000471538 COL17A1Q9UMD9 1497 aaPredicted RBP9.42□□□□□ -0.9
SPEN-204ENST00000471538 PRR29P0C7W0 189 aa9.41□□□□□ -0.9
SPEN-204ENST00000471538 MIA2Q96PC5 1412 aa9.41□□□□□ -0.9
SPEN-204ENST00000471538 GCC2Q8IWJ2 1684 aa9.41□□□□□ -0.9
SPEN-204ENST00000471538 NAIPQ13075 1403 aa9.4□□□□□ -0.9
SPEN-204ENST00000471538 AKNAQ7Z591 1439 aa9.4□□□□□ -0.9
SPEN-204ENST00000471538 CD44P16070 742 aaKnown RBP9.39□□□□□ -0.91
SPEN-204ENST00000471538 PLSCR2Q9NRY7 297 aa9.39□□□□□ -0.91
SPEN-204ENST00000471538 CARMIL2Q6F5E8 1435 aa9.38□□□□□ -0.91
SPEN-204ENST00000471538 GLI2P10070 1586 aa9.38□□□□□ -0.91
SPEN-204ENST00000471538 CLCN6P51797 869 aa9.38□□□□□ -0.91
SPEN-204ENST00000471538 UACAQ9BZF9 1416 aa9.37□□□□□ -0.91
SPEN-204ENST00000471538 ASXL2Q76L83 1435 aa9.37□□□□□ -0.91
SPEN-204ENST00000471538 ABCA8O94911 1581 aa9.37□□□□□ -0.91
SPEN-204ENST00000471538 FARP1Q9Y4F1 1045 aaPredicted RBP9.36□□□□□ -0.91
SPEN-204ENST00000471538 ABCC2Q92887 1545 aa9.36□□□□□ -0.91
SPEN-204ENST00000471538 PLB1Q6P1J6 1458 aa9.35□□□□□ -0.91
SPEN-204ENST00000471538 PTPRGP23470 1445 aa9.35□□□□□ -0.91
SPEN-204ENST00000471538 DNMT1P26358 1616 aaKnown RBP9.34□□□□□ -0.91
SPEN-204ENST00000471538 TROQ12816 1431 aaPredicted RBP9.34□□□□□ -0.91
SPEN-204ENST00000471538 MAP3K4Q9Y6R4 1608 aa9.34□□□□□ -0.91
SPEN-204ENST00000471538 TIMELESSQ9UNS1 1208 aa9.33□□□□□ -0.92
SPEN-204ENST00000471538 DENND4BO75064 1496 aaPredicted RBP9.33□□□□□ -0.92
SPEN-204ENST00000471538 ITSN2Q9NZM3 1697 aa9.32□□□□□ -0.92
SPEN-204ENST00000471538 DAPK1P53355 1430 aa9.32□□□□□ -0.92
SPEN-204ENST00000471538 ROCK1Q13464 1354 aa9.32□□□□□ -0.92
SPEN-204ENST00000471538 KIF14Q15058 1648 aa9.32□□□□□ -0.92
SPEN-204ENST00000471538 SIN3AQ96ST3 1273 aa9.31□□□□□ -0.92
SPEN-204ENST00000471538 UHRF1BP1LA0JNW5 1464 aa9.31□□□□□ -0.92
SPEN-204ENST00000471538 ABCC5O15440 1437 aa9.31□□□□□ -0.92
SPEN-204ENST00000471538 MIER1Q8N108 512 aa9.31□□□□□ -0.92
SPEN-204ENST00000471538 KDM5BQ9UGL1 1544 aa9.3□□□□□ -0.92
SPEN-204ENST00000471538 GPATCH8Q9UKJ3 1502 aaKnown RBP9.3□□□□□ -0.92
SPEN-204ENST00000471538 CROCC2H7BZ55 1655 aa9.29□□□□□ -0.92
SPEN-204ENST00000471538 ARID3CA6NKF2 412 aa9.29□□□□□ -0.92
SPEN-204ENST00000471538 CDK11AQ9UQ88 783 aaPredicted RBP9.29□□□□□ -0.92
SPEN-204ENST00000471538 ACIN1Q9UKV3 1341 aaKnown RBP9.28□□□□□ -0.92
SPEN-204ENST00000471538 ATP10BO94823 1461 aa9.28□□□□□ -0.92
SPEN-204ENST00000471538 CAMSAP2Q08AD1 1489 aa9.28□□□□□ -0.92
SPEN-204ENST00000471538 ZCCHC11Q5TAX3 1644 aaKnown RBP9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms