RNA–Protein interactions for RNA: ENST00000471445.5

SREBF1-210, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 936 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-210	ENST00000471445	ARHGAP5	Q13017	1502 aa		33.91	■■■■□ 3.02
SREBF1-210	ENST00000471445	CEP162	Q5TB80	1403 aa		33.9	■■■■□ 3.02
SREBF1-210	ENST00000471445	SCAPER	Q9BY12	1400 aa		33.9	■■■■□ 3.02
SREBF1-210	ENST00000471445	ADAMTSL3	P82987	1691 aa		33.9	■■■■□ 3.02
SREBF1-210	ENST00000471445	ZFYVE16	Q7Z3T8	1539 aa		33.89	■■■■□ 3.02
SREBF1-210	ENST00000471445	BCORL1	Q5H9F3	1711 aa		33.88	■■■■□ 3.01
SREBF1-210	ENST00000471445	MAGI2	Q86UL8	1455 aa		33.87	■■■■□ 3.01
SREBF1-210	ENST00000471445	CDC42BPA	Q5VT25	1732 aa		33.87	■■■■□ 3.01
SREBF1-210	ENST00000471445	EFCAB2	Q5VUJ9	269 aa		33.86	■■■■□ 3.01
SREBF1-210	ENST00000471445	YEATS2	Q9ULM3	1422 aa		33.81	■■■■□ 3
SREBF1-210	ENST00000471445	SIGLEC1	Q9BZZ2	1709 aa		33.81	■■■■□ 3
SREBF1-210	ENST00000471445	KDM5C	P41229	1560 aa		33.8	■■■■□ 3
SREBF1-210	ENST00000471445	ABCC1	P33527	1531 aa		33.78	■■■■□ 3
SREBF1-210	ENST00000471445	ZNF518A	Q6AHZ1	1483 aa		33.77	■■■■□ 3
SREBF1-210	ENST00000471445	MADD	Q8WXG6	1647 aa		33.76	■■■■□ 3
SREBF1-210	ENST00000471445	ITSN2	Q9NZM3	1697 aa		33.76	■■■□□ 2.99
SREBF1-210	ENST00000471445	HECW2	Q9P2P5	1572 aa		33.71	■■■□□ 2.99
SREBF1-210	ENST00000471445	PTPRM	P28827	1452 aa		33.69	■■■□□ 2.98
SREBF1-210	ENST00000471445	EHBP1L1	Q8N3D4	1523 aa		33.69	■■■□□ 2.98
SREBF1-210	ENST00000471445	ARID4B	Q4LE39	1312 aa	Predicted RBP	33.68	■■■□□ 2.98
SREBF1-210	ENST00000471445	ARHGEF12	Q9NZN5	1544 aa		33.67	■■■□□ 2.98
SREBF1-210	ENST00000471445	SAMD9L	Q8IVG5	1584 aa		33.66	■■■□□ 2.98
SREBF1-210	ENST00000471445	GPATCH8	Q9UKJ3	1502 aa	Known RBP	33.66	■■■□□ 2.98
SREBF1-210	ENST00000471445	RIMS1	Q86UR5	1692 aa	Known RBP	33.65	■■■□□ 2.98
SREBF1-210	ENST00000471445	C9orf84	Q5VXU9	1444 aa		33.65	■■■□□ 2.98
SREBF1-210	ENST00000471445	MTUS2	Q5JR59	1369 aa		33.64	■■■□□ 2.98
SREBF1-210	ENST00000471445	ATP10A	O60312	1499 aa		33.63	■■■□□ 2.97
SREBF1-210	ENST00000471445	DIP2C	Q9Y2E4	1556 aa		33.63	■■■□□ 2.97
SREBF1-210	ENST00000471445	TRAPPC8	Q9Y2L5	1435 aa		33.61	■■■□□ 2.97
SREBF1-210	ENST00000471445	ABCA6	Q8N139	1617 aa		33.61	■■■□□ 2.97
SREBF1-210	ENST00000471445	MLH3	Q9UHC1	1453 aa		33.6	■■■□□ 2.97
SREBF1-210	ENST00000471445	LOC105371045	A0A1W2PR82	267 aa		33.59	■■■□□ 2.97
SREBF1-210	ENST00000471445	AFAP1	Q8N556	730 aa		33.59	■■■□□ 2.97
SREBF1-210	ENST00000471445	RERE	Q9P2R6	1566 aa		33.59	■■■□□ 2.97
SREBF1-210	ENST00000471445	TIAM1	Q13009	1591 aa		33.58	■■■□□ 2.97
SREBF1-210	ENST00000471445	FER1L4	A9Z1Z3	1794 aa		33.57	■■■□□ 2.97
SREBF1-210	ENST00000471445	SYCP2	Q9BX26	1530 aa		33.57	■■■□□ 2.96
SREBF1-210	ENST00000471445	VPS8	Q8N3P4	1428 aa		33.55	■■■□□ 2.96
SREBF1-210	ENST00000471445	KIDINS220	Q9ULH0	1771 aa		33.55	■■■□□ 2.96
SREBF1-210	ENST00000471445	CCNB3	Q8WWL7	1395 aa		33.53	■■■□□ 2.96
SREBF1-210	ENST00000471445	SUPT6H	Q7KZ85	1726 aa	Known RBP	33.49	■■■□□ 2.95
SREBF1-210	ENST00000471445	PLEKHH2	Q8IVE3	1493 aa		33.49	■■■□□ 2.95
SREBF1-210	ENST00000471445	KIAA1107	Q9UPP5	1409 aa		33.47	■■■□□ 2.95
SREBF1-210	ENST00000471445	ZNF777	Q9ULD5	760 aa	Predicted RBP	33.45	■■■□□ 2.95
SREBF1-210	ENST00000471445	CFDP1	Q9UEE9	299 aa	Predicted RBP	33.43	■■■□□ 2.94
SREBF1-210	ENST00000471445	AGL	P35573	1532 aa		33.43	■■■□□ 2.94
SREBF1-210	ENST00000471445	INO80	Q9ULG1	1556 aa	Predicted RBP	33.43	■■■□□ 2.94
SREBF1-210	ENST00000471445	MYT1L	Q9UL68	1186 aa		33.41	■■■□□ 2.94
SREBF1-210	ENST00000471445	NCOA2	Q15596	1464 aa		33.41	■■■□□ 2.94
SREBF1-210	ENST00000471445	MLEC	Q14165	292 aa		33.4	■■■□□ 2.94
SREBF1-210	ENST00000471445	ILDR1	Q86SU0	546 aa	Predicted RBP	33.4	■■■□□ 2.94
SREBF1-210	ENST00000471445	ATP7A	Q04656	1500 aa		33.38	■■■□□ 2.93
SREBF1-210	ENST00000471445	MAP3K1	Q13233	1512 aa		33.36	■■■□□ 2.93
SREBF1-210	ENST00000471445	LRRC9	Q6ZRR7	1453 aa		33.35	■■■□□ 2.93
SREBF1-210	ENST00000471445	LMTK3	Q96Q04	1460 aa		33.35	■■■□□ 2.93
SREBF1-210	ENST00000471445	HNRNPM	P52272	730 aa	Known RBP eCLIP	33.34	■■■□□ 2.93
SREBF1-210	ENST00000471445	MBD5	Q9P267	1494 aa		33.31	■■■□□ 2.92
SREBF1-210	ENST00000471445	SPAG9	O60271	1321 aa	Known RBP	33.3	■■■□□ 2.92
SREBF1-210	ENST00000471445	PLXNC1	O60486	1568 aa		33.3	■■■□□ 2.92
SREBF1-210	ENST00000471445	ZNF644	Q9H582	1327 aa	Predicted RBP	33.27	■■■□□ 2.92
SREBF1-210	ENST00000471445	CAMSAP2	Q08AD1	1489 aa		33.26	■■■□□ 2.92
SREBF1-210	ENST00000471445	ADGB	Q8N7X0	1667 aa		33.26	■■■□□ 2.91
SREBF1-210	ENST00000471445	C3	P01024	1663 aa		33.21	■■■□□ 2.91
SREBF1-210	ENST00000471445	PREX1	Q8TCU6	1659 aa		33.21	■■■□□ 2.91
SREBF1-210	ENST00000471445	A2M	P01023	1474 aa		33.19	■■■□□ 2.9
SREBF1-210	ENST00000471445	CCDC141	Q6ZP82	1450 aa		33.19	■■■□□ 2.9
SREBF1-210	ENST00000471445	PLPPR3	Q6T4P5	718 aa		33.19	■■■□□ 2.9
SREBF1-210	ENST00000471445	ARHGEF5	Q12774	1597 aa		33.17	■■■□□ 2.9
SREBF1-210	ENST00000471445	RTEL1-TNFRSF6B	F6WH68	1400 aa		33.17	■■■□□ 2.9
SREBF1-210	ENST00000471445	MROH2A	A6NES4	1674 aa		33.16	■■■□□ 2.9
SREBF1-210	ENST00000471445	KANK4	Q5T7N3	995 aa	Predicted RBP	33.14	■■■□□ 2.9
SREBF1-210	ENST00000471445	CNTLN	Q9NXG0	1405 aa		33.13	■■■□□ 2.89
SREBF1-210	ENST00000471445	CEBPA	P49715	358 aa	Predicted RBP	33.1	■■■□□ 2.89
SREBF1-210	ENST00000471445	SETD1B	Q9UPS6	1966 aa	Known RBP	33.1	■■■□□ 2.89
SREBF1-210	ENST00000471445	MYOM3	Q5VTT5	1437 aa		33.08	■■■□□ 2.89
SREBF1-210	ENST00000471445	MIA2	Q96PC5	1412 aa		33.05	■■■□□ 2.88
SREBF1-210	ENST00000471445	CLTC	Q00610	1675 aa	Known RBP	33.05	■■■□□ 2.88
SREBF1-210	ENST00000471445	RSPH4A	Q5TD94	716 aa		33.04	■■■□□ 2.88
SREBF1-210	ENST00000471445	ESF1	Q9H501	851 aa	Known RBP	33.03	■■■□□ 2.88
SREBF1-210	ENST00000471445	MAST1	Q9Y2H9	1570 aa		33.03	■■■□□ 2.88
SREBF1-210	ENST00000471445	HSPA2	P54652	639 aa		33.02	■■■□□ 2.88
SREBF1-210	ENST00000471445	UHRF1BP1	Q6BDS2	1440 aa		33	■■■□□ 2.87
SREBF1-210	ENST00000471445	DHX29	Q7Z478	1369 aa	Known RBP	32.98	■■■□□ 2.87
SREBF1-210	ENST00000471445	APLP2	Q06481	763 aa		32.95	■■■□□ 2.87
SREBF1-210	ENST00000471445	NPAT	Q14207	1427 aa		32.94	■■■□□ 2.86
SREBF1-210	ENST00000471445	PTPN23	Q9H3S7	1636 aa		32.92	■■■□□ 2.86
SREBF1-210	ENST00000471445	CROCC2	H7BZ55	1655 aa		32.92	■■■□□ 2.86
SREBF1-210	ENST00000471445	ZMYM3	Q14202	1370 aa		32.91	■■■□□ 2.86
SREBF1-210	ENST00000471445	FAM135A	Q9P2D6	1515 aa		32.91	■■■□□ 2.86
SREBF1-210	ENST00000471445	GGT6	Q6P531	493 aa		32.89	■■■□□ 2.86
SREBF1-210	ENST00000471445	STRC	Q7RTU9	1775 aa		32.88	■■■□□ 2.85
SREBF1-210	ENST00000471445	TSPY4	P0CV99	314 aa		32.87	■■■□□ 2.85
SREBF1-210	ENST00000471445	TSPY10	P0CW01	314 aa		32.87	■■■□□ 2.85
SREBF1-210	ENST00000471445	PPP6R1	Q9UPN7	881 aa		32.87	■■■□□ 2.85
SREBF1-210	ENST00000471445	MYO3A	Q8NEV4	1616 aa		32.85	■■■□□ 2.85
SREBF1-210	ENST00000471445	ZNF142	P52746	1687 aa	Predicted RBP	32.85	■■■□□ 2.85
SREBF1-210	ENST00000471445	EIF2AK4	Q9P2K8	1649 aa	Known RBP	32.84	■■■□□ 2.85
SREBF1-210	ENST00000471445	KDM5D	Q9BY66	1539 aa		32.84	■■■□□ 2.85
SREBF1-210	ENST00000471445	TCOF1	Q13428	1488 aa	Known RBP	32.84	■■■□□ 2.85
SREBF1-210	ENST00000471445	RNF17	Q9BXT8	1623 aa	Known RBP	32.84	■■■□□ 2.85

Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms