RNA–Protein interactions for RNA: ENST00000470458.1

RFTN1-208, Transcript of raftlin, lipid raft linker 1, humanhuman

TSL 4

Gene RFTN1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFTN1-208ENST00000470458 SCAPERQ9BY12 1400 aa17.16■□□□□ 0.34
RFTN1-208ENST00000470458 RICTORQ6R327 1708 aa17.15■□□□□ 0.34
RFTN1-208ENST00000470458 PREX2Q70Z35 1606 aa17.14■□□□□ 0.33
RFTN1-208ENST00000470458 CCNB3Q8WWL7 1395 aa17.14■□□□□ 0.33
RFTN1-208ENST00000470458 ZNF518AQ6AHZ1 1483 aa17.13■□□□□ 0.33
RFTN1-208ENST00000470458 ZMYM4Q5VZL5 1548 aa17.13■□□□□ 0.33
RFTN1-208ENST00000470458 EHBP1L1Q8N3D4 1523 aa17.13■□□□□ 0.33
RFTN1-208ENST00000470458 POGZQ7Z3K3 1410 aa17.13■□□□□ 0.33
RFTN1-208ENST00000470458 PLEKHH2Q8IVE3 1493 aa17.12■□□□□ 0.33
RFTN1-208ENST00000470458 CDC42BPBQ9Y5S2 1711 aa17.12■□□□□ 0.33
RFTN1-208ENST00000470458 MAP3K1Q13233 1512 aa17.11■□□□□ 0.33
RFTN1-208ENST00000470458 CFDP1Q9UEE9 299 aaPredicted RBP17.11■□□□□ 0.33
RFTN1-208ENST00000470458 KDM4FA0A1W2PPD8 638 aa17.1■□□□□ 0.33
RFTN1-208ENST00000470458 CDC42BPAQ5VT25 1732 aa17.1■□□□□ 0.33
RFTN1-208ENST00000470458 MYT1LQ9UL68 1186 aa17.09■□□□□ 0.33
RFTN1-208ENST00000470458 ARID4BQ4LE39 1312 aaPredicted RBP17.09■□□□□ 0.33
RFTN1-208ENST00000470458 ITSN2Q9NZM3 1697 aa17.08■□□□□ 0.32
RFTN1-208ENST00000470458 FRMPD1Q5SYB0 1578 aa17.08■□□□□ 0.32
RFTN1-208ENST00000470458 ZFYVE16Q7Z3T8 1539 aa17.08■□□□□ 0.32
RFTN1-208ENST00000470458 RSPH4AQ5TD94 716 aa17.08■□□□□ 0.32
RFTN1-208ENST00000470458 SUPT6HQ7KZ85 1726 aaKnown RBP17.07■□□□□ 0.32
RFTN1-208ENST00000470458 ARHGEF40Q8TER5 1519 aa17.07■□□□□ 0.32
RFTN1-208ENST00000470458 GPATCH8Q9UKJ3 1502 aaKnown RBP17.06■□□□□ 0.32
RFTN1-208ENST00000470458 KIAA1107Q9UPP5 1409 aa17.06■□□□□ 0.32
RFTN1-208ENST00000470458 TIAM1Q13009 1591 aa17.06■□□□□ 0.32
RFTN1-208ENST00000470458 ZNF777Q9ULD5 760 aaPredicted RBP17.04■□□□□ 0.32
RFTN1-208ENST00000470458 ATP10AO60312 1499 aa17.04■□□□□ 0.32
RFTN1-208ENST00000470458 ABCC1P33527 1531 aa17.03■□□□□ 0.32
RFTN1-208ENST00000470458 MLH3Q9UHC1 1453 aa17.03■□□□□ 0.32
RFTN1-208ENST00000470458 KDM5CP41229 1560 aa17.02■□□□□ 0.32
RFTN1-208ENST00000470458 AFAP1Q8N556 730 aa17.02■□□□□ 0.32
RFTN1-208ENST00000470458 C9orf84Q5VXU9 1444 aa17.01■□□□□ 0.31
RFTN1-208ENST00000470458 HECW2Q9P2P5 1572 aa17.01■□□□□ 0.31
RFTN1-208ENST00000470458 LRRC9Q6ZRR7 1453 aa17■□□□□ 0.31
RFTN1-208ENST00000470458 NCOA2Q15596 1464 aa16.99■□□□□ 0.31
RFTN1-208ENST00000470458 SPAG9O60271 1321 aaKnown RBP16.98■□□□□ 0.31
RFTN1-208ENST00000470458 BCORL1Q5H9F3 1711 aa16.98■□□□□ 0.31
RFTN1-208ENST00000470458 SAMD9LQ8IVG5 1584 aa16.96■□□□□ 0.31
RFTN1-208ENST00000470458 REREQ9P2R6 1566 aa16.96■□□□□ 0.31
RFTN1-208ENST00000470458 ADAMTSL3P82987 1691 aa16.95■□□□□ 0.3
RFTN1-208ENST00000470458 HNRNPMP52272 730 aaKnown RBP eCLIP16.95■□□□□ 0.3
RFTN1-208ENST00000470458 YEATS2Q9ULM3 1422 aa16.95■□□□□ 0.3
RFTN1-208ENST00000470458 ESF1Q9H501 851 aaKnown RBP16.94■□□□□ 0.3
RFTN1-208ENST00000470458 TRAPPC8Q9Y2L5 1435 aa16.94■□□□□ 0.3
RFTN1-208ENST00000470458 SYCP2Q9BX26 1530 aa16.93■□□□□ 0.3
RFTN1-208ENST00000470458 TSPY4P0CV99 314 aa16.93■□□□□ 0.3
RFTN1-208ENST00000470458 TSPY10P0CW01 314 aa16.93■□□□□ 0.3
RFTN1-208ENST00000470458 MIA2Q96PC5 1412 aa16.93■□□□□ 0.3
RFTN1-208ENST00000470458 ARHGEF12Q9NZN5 1544 aa16.92■□□□□ 0.3
RFTN1-208ENST00000470458 RTEL1-TNFRSF6BF6WH68 1400 aa16.92■□□□□ 0.3
RFTN1-208ENST00000470458 AGLP35573 1532 aa16.91■□□□□ 0.3
RFTN1-208ENST00000470458 PPP6R1Q9UPN7 881 aa16.9■□□□□ 0.3
RFTN1-208ENST00000470458 PTPRMP28827 1452 aa16.89■□□□□ 0.29
RFTN1-208ENST00000470458 KIDINS220Q9ULH0 1771 aa16.89■□□□□ 0.29
RFTN1-208ENST00000470458 DIP2CQ9Y2E4 1556 aa16.89■□□□□ 0.29
RFTN1-208ENST00000470458 MYOM3Q5VTT5 1437 aa16.87■□□□□ 0.29
RFTN1-208ENST00000470458 ATP7AQ04656 1500 aa16.87■□□□□ 0.29
RFTN1-208ENST00000470458 CCDC141Q6ZP82 1450 aa16.86■□□□□ 0.29
RFTN1-208ENST00000470458 ADGBQ8N7X0 1667 aa16.86■□□□□ 0.29
RFTN1-208ENST00000470458 KANK4Q5T7N3 995 aaPredicted RBP16.86■□□□□ 0.29
RFTN1-208ENST00000470458 FER1L4A9Z1Z3 1794 aa16.86■□□□□ 0.29
RFTN1-208ENST00000470458 CAMSAP2Q08AD1 1489 aa16.86■□□□□ 0.29
RFTN1-208ENST00000470458 MBD5Q9P267 1494 aa16.86■□□□□ 0.29
RFTN1-208ENST00000470458 ARHGEF5Q12774 1597 aa16.85■□□□□ 0.29
RFTN1-208ENST00000470458 ABCA6Q8N139 1617 aa16.85■□□□□ 0.29
RFTN1-208ENST00000470458 MADDQ8WXG6 1647 aa16.85■□□□□ 0.29
RFTN1-208ENST00000470458 MLECQ14165 292 aa16.85■□□□□ 0.29
RFTN1-208ENST00000470458 SETD1BQ9UPS6 1966 aaKnown RBP16.85■□□□□ 0.29
RFTN1-208ENST00000470458 CNTLNQ9NXG0 1405 aa16.85■□□□□ 0.29
RFTN1-208ENST00000470458 ZNF644Q9H582 1327 aaPredicted RBP16.84■□□□□ 0.29
RFTN1-208ENST00000470458 INO80Q9ULG1 1556 aaPredicted RBP16.84■□□□□ 0.29
RFTN1-208ENST00000470458 RIMS1Q86UR5 1692 aaKnown RBP16.83■□□□□ 0.28
RFTN1-208ENST00000470458 A2MP01023 1474 aa16.82■□□□□ 0.28
RFTN1-208ENST00000470458 DHX29Q7Z478 1369 aaKnown RBP16.79■□□□□ 0.28
RFTN1-208ENST00000470458 PLXNC1O60486 1568 aa16.76■□□□□ 0.27
RFTN1-208ENST00000470458 MAST1Q9Y2H9 1570 aa16.76■□□□□ 0.27
RFTN1-208ENST00000470458 SIGLEC1Q9BZZ2 1709 aa16.76■□□□□ 0.27
RFTN1-208ENST00000470458 FAM135AQ9P2D6 1515 aa16.75■□□□□ 0.27
RFTN1-208ENST00000470458 PTPN23Q9H3S7 1636 aa16.74■□□□□ 0.27
RFTN1-208ENST00000470458 FGD6Q6ZV73 1430 aa16.74■□□□□ 0.27
RFTN1-208ENST00000470458 MROH2AA6NES4 1674 aa16.73■□□□□ 0.27
RFTN1-208ENST00000470458 GGT6Q6P531 493 aa16.72■□□□□ 0.27
RFTN1-208ENST00000470458 SHANK2Q9UPX8 1470 aa16.72■□□□□ 0.27
RFTN1-208ENST00000470458 KIF3BO15066 747 aa16.71■□□□□ 0.27
RFTN1-208ENST00000470458 TCOF1Q13428 1488 aaKnown RBP16.71■□□□□ 0.27
RFTN1-208ENST00000470458 NPATQ14207 1427 aa16.69■□□□□ 0.26
RFTN1-208ENST00000470458 PREX1Q8TCU6 1659 aa16.69■□□□□ 0.26
RFTN1-208ENST00000470458 ZMYM3Q14202 1370 aa16.68■□□□□ 0.26
RFTN1-208ENST00000470458 ANKRD30AQ9BXX3 1397 aa16.68■□□□□ 0.26
RFTN1-208ENST00000470458 PLPPR3Q6T4P5 718 aa16.68■□□□□ 0.26
RFTN1-208ENST00000470458 EIF2AK4Q9P2K8 1649 aaKnown RBP16.67■□□□□ 0.26
RFTN1-208ENST00000470458 DUOX2Q9NRD8 1548 aa16.67■□□□□ 0.26
RFTN1-208ENST00000470458 UHRF1BP1Q6BDS2 1440 aa16.67■□□□□ 0.26
RFTN1-208ENST00000470458 WASHC2CQ9Y4E1 1318 aa16.67■□□□□ 0.26
RFTN1-208ENST00000470458 DNMT1P26358 1616 aaKnown RBP16.67■□□□□ 0.26
RFTN1-208ENST00000470458 C3P01024 1663 aa16.66■□□□□ 0.26
RFTN1-208ENST00000470458 DAPK1P53355 1430 aa16.66■□□□□ 0.26
RFTN1-208ENST00000470458 FAM50AQ14320 339 aaKnown RBP16.66■□□□□ 0.26
RFTN1-208ENST00000470458 DMRT2Q9Y5R5 561 aa16.66■□□□□ 0.26
RFTN1-208ENST00000470458 ABCC5O15440 1437 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms