RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 ARAP3Q8WWN8 1544 aa23.03■■□□□ 1.28
COL9A3-209ENST00000469852 PHLDB1Q86UU1 1377 aa23.02■■□□□ 1.28
COL9A3-209ENST00000469852 ITSN2Q9NZM3 1697 aa23.02■■□□□ 1.28
COL9A3-209ENST00000469852 ARHGAP5Q13017 1502 aa23.02■■□□□ 1.28
COL9A3-209ENST00000469852 FANCAO15360 1455 aa23.01■■□□□ 1.27
COL9A3-209ENST00000469852 TEX14Q8IWB6 1497 aa23.01■■□□□ 1.27
COL9A3-209ENST00000469852 MYOM3Q5VTT5 1437 aa22.97■■□□□ 1.27
COL9A3-209ENST00000469852 CFAP74Q9C0B2 1584 aa22.97■■□□□ 1.27
COL9A3-209ENST00000469852 NEO1Q92859 1461 aa22.96■■□□□ 1.27
COL9A3-209ENST00000469852 SAMD9LQ8IVG5 1584 aa22.96■■□□□ 1.27
COL9A3-209ENST00000469852 AKNAQ7Z591 1439 aa22.94■■□□□ 1.26
COL9A3-209ENST00000469852 CFDP1Q9UEE9 299 aaPredicted RBP22.94■■□□□ 1.26
COL9A3-209ENST00000469852 COL17A1Q9UMD9 1497 aaPredicted RBP22.93■■□□□ 1.26
COL9A3-209ENST00000469852 EFCAB2Q5VUJ9 269 aa22.93■■□□□ 1.26
COL9A3-209ENST00000469852 ZNF644Q9H582 1327 aaPredicted RBP22.91■■□□□ 1.26
COL9A3-209ENST00000469852 ZNF777Q9ULD5 760 aaPredicted RBP22.91■■□□□ 1.26
COL9A3-209ENST00000469852 ABCC1P33527 1531 aa22.9■■□□□ 1.26
COL9A3-209ENST00000469852 ARHGEF12Q9NZN5 1544 aa22.9■■□□□ 1.26
COL9A3-209ENST00000469852 ADGRL1O94910 1474 aa22.9■■□□□ 1.26
COL9A3-209ENST00000469852 FGD6Q6ZV73 1430 aa22.89■■□□□ 1.25
COL9A3-209ENST00000469852 CAMSAP2Q08AD1 1489 aa22.88■■□□□ 1.25
COL9A3-209ENST00000469852 MIA2Q96PC5 1412 aa22.87■■□□□ 1.25
COL9A3-209ENST00000469852 SYCP2Q9BX26 1530 aa22.87■■□□□ 1.25
COL9A3-209ENST00000469852 FRMPD1Q5SYB0 1578 aa22.86■■□□□ 1.25
COL9A3-209ENST00000469852 SCAPERQ9BY12 1400 aa22.86■■□□□ 1.25
COL9A3-209ENST00000469852 PTPN23Q9H3S7 1636 aa22.86■■□□□ 1.25
COL9A3-209ENST00000469852 RICTORQ6R327 1708 aa22.84■■□□□ 1.25
COL9A3-209ENST00000469852 TCOF1Q13428 1488 aaKnown RBP22.82■■□□□ 1.24
COL9A3-209ENST00000469852 RAPGEF3O95398 923 aa22.82■■□□□ 1.24
COL9A3-209ENST00000469852 TRAPPC8Q9Y2L5 1435 aa22.82■■□□□ 1.24
COL9A3-209ENST00000469852 DENND4BO75064 1496 aaPredicted RBP22.81■■□□□ 1.24
COL9A3-209ENST00000469852 HNRNPMP52272 730 aaKnown RBP eCLIP22.81■■□□□ 1.24
COL9A3-209ENST00000469852 POGZQ7Z3K3 1410 aa22.81■■□□□ 1.24
COL9A3-209ENST00000469852 MBD5Q9P267 1494 aa22.8■■□□□ 1.24
COL9A3-209ENST00000469852 PLEKHH2Q8IVE3 1493 aa22.79■■□□□ 1.24
COL9A3-209ENST00000469852 KIAA1107Q9UPP5 1409 aa22.79■■□□□ 1.24
COL9A3-209ENST00000469852 AFAP1Q8N556 730 aa22.76■■□□□ 1.23
COL9A3-209ENST00000469852 RRBP1Q9P2E9 1410 aaKnown RBP22.75■■□□□ 1.23
COL9A3-209ENST00000469852 KDM5CP41229 1560 aa22.75■■□□□ 1.23
COL9A3-209ENST00000469852 ZNF518AQ6AHZ1 1483 aa22.74■■□□□ 1.23
COL9A3-209ENST00000469852 ARHGEF5Q12774 1597 aa22.74■■□□□ 1.23
COL9A3-209ENST00000469852 ZMYM4Q5VZL5 1548 aa22.72■■□□□ 1.23
COL9A3-209ENST00000469852 FAM50AQ14320 339 aaKnown RBP22.72■■□□□ 1.23
COL9A3-209ENST00000469852 CCDC141Q6ZP82 1450 aa22.72■■□□□ 1.23
COL9A3-209ENST00000469852 DNMT1P26358 1616 aaKnown RBP22.71■■□□□ 1.23
COL9A3-209ENST00000469852 CROCC2H7BZ55 1655 aa22.69■■□□□ 1.22
COL9A3-209ENST00000469852 ABCC5O15440 1437 aa22.68■■□□□ 1.22
COL9A3-209ENST00000469852 HECW2Q9P2P5 1572 aa22.67■■□□□ 1.22
COL9A3-209ENST00000469852 DAPK1P53355 1430 aa22.67■■□□□ 1.22
COL9A3-209ENST00000469852 KIDINS220Q9ULH0 1771 aa22.67■■□□□ 1.22
COL9A3-209ENST00000469852 INO80Q9ULG1 1556 aaPredicted RBP22.67■■□□□ 1.22
COL9A3-209ENST00000469852 YEATS2Q9ULM3 1422 aa22.65■■□□□ 1.22
COL9A3-209ENST00000469852 ZFYVE16Q7Z3T8 1539 aa22.65■■□□□ 1.22
COL9A3-209ENST00000469852 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.64■■□□□ 1.22
COL9A3-209ENST00000469852 MLH3Q9UHC1 1453 aa22.64■■□□□ 1.21
COL9A3-209ENST00000469852 ATP7AQ04656 1500 aa22.63■■□□□ 1.21
COL9A3-209ENST00000469852 ABCA6Q8N139 1617 aa22.63■■□□□ 1.21
COL9A3-209ENST00000469852 PTPRKQ15262 1439 aa22.63■■□□□ 1.21
COL9A3-209ENST00000469852 ARHGEF40Q8TER5 1519 aa22.62■■□□□ 1.21
COL9A3-209ENST00000469852 SPAG9O60271 1321 aaKnown RBP22.62■■□□□ 1.21
COL9A3-209ENST00000469852 MAST1Q9Y2H9 1570 aa22.62■■□□□ 1.21
COL9A3-209ENST00000469852 RSPH4AQ5TD94 716 aa22.61■■□□□ 1.21
COL9A3-209ENST00000469852 DIP2CQ9Y2E4 1556 aa22.61■■□□□ 1.21
COL9A3-209ENST00000469852 MAGI2Q86UL8 1455 aa22.6■■□□□ 1.21
COL9A3-209ENST00000469852 C9orf84Q5VXU9 1444 aa22.6■■□□□ 1.21
COL9A3-209ENST00000469852 SHANK2Q9UPX8 1470 aa22.6■■□□□ 1.21
COL9A3-209ENST00000469852 ITGAEP38570 1179 aa22.58■■□□□ 1.21
COL9A3-209ENST00000469852 RTEL1-TNFRSF6BF6WH68 1400 aa22.57■■□□□ 1.2
COL9A3-209ENST00000469852 SIGLEC1Q9BZZ2 1709 aa22.57■■□□□ 1.2
COL9A3-209ENST00000469852 MYT1LQ9UL68 1186 aa22.57■■□□□ 1.2
COL9A3-209ENST00000469852 ADGBQ8N7X0 1667 aa22.56■■□□□ 1.2
COL9A3-209ENST00000469852 TSPY4P0CV99 314 aa22.56■■□□□ 1.2
COL9A3-209ENST00000469852 TSPY10P0CW01 314 aa22.56■■□□□ 1.2
COL9A3-209ENST00000469852 CHIC2Q9UKJ5 165 aa22.56■■□□□ 1.2
COL9A3-209ENST00000469852 PLXNC1O60486 1568 aa22.54■■□□□ 1.2
COL9A3-209ENST00000469852 ATP10AO60312 1499 aa22.52■■□□□ 1.2
COL9A3-209ENST00000469852 ADGRL2O95490 1459 aa22.51■■□□□ 1.19
COL9A3-209ENST00000469852 NCOA1Q15788 1441 aa22.48■■□□□ 1.19
COL9A3-209ENST00000469852 REREQ9P2R6 1566 aa22.47■■□□□ 1.19
COL9A3-209ENST00000469852 A2MP01023 1474 aa22.47■■□□□ 1.19
COL9A3-209ENST00000469852 RRP7BPQ9NSQ0 103 aa22.46■■□□□ 1.19
COL9A3-209ENST00000469852 ANKRD30AQ9BXX3 1397 aa22.45■■□□□ 1.18
COL9A3-209ENST00000469852 KIF15Q9NS87 1388 aa22.45■■□□□ 1.18
COL9A3-209ENST00000469852 ILDR1Q86SU0 546 aaPredicted RBP22.44■■□□□ 1.18
COL9A3-209ENST00000469852 ROCK1Q13464 1354 aa22.43■■□□□ 1.18
COL9A3-209ENST00000469852 DUOX2Q9NRD8 1548 aa22.42■■□□□ 1.18
COL9A3-209ENST00000469852 DHX29Q7Z478 1369 aaKnown RBP22.42■■□□□ 1.18
COL9A3-209ENST00000469852 AGLP35573 1532 aa22.39■■□□□ 1.17
COL9A3-209ENST00000469852 GCC2Q8IWJ2 1684 aa22.37■■□□□ 1.17
COL9A3-209ENST00000469852 NAIPQ13075 1403 aa22.36■■□□□ 1.17
COL9A3-209ENST00000469852 BCORL1Q5H9F3 1711 aa22.36■■□□□ 1.17
COL9A3-209ENST00000469852 EIF2AK4Q9P2K8 1649 aaKnown RBP22.35■■□□□ 1.17
COL9A3-209ENST00000469852 ARID4BQ4LE39 1312 aaPredicted RBP22.35■■□□□ 1.17
COL9A3-209ENST00000469852 ERBINQ96RT1 1412 aa22.35■■□□□ 1.17
COL9A3-209ENST00000469852 ADAMTSL3P82987 1691 aa22.34■■□□□ 1.17
COL9A3-209ENST00000469852 HFM1A2PYH4 1435 aa22.33■■□□□ 1.17
COL9A3-209ENST00000469852 ANKRD50Q9ULJ7 1429 aa22.33■■□□□ 1.17
COL9A3-209ENST00000469852 TRIM26Q12899 539 aaPredicted RBP22.33■■□□□ 1.17
COL9A3-209ENST00000469852 KIF3BO15066 747 aa22.31■■□□□ 1.16
COL9A3-209ENST00000469852 MLECQ14165 292 aa22.31■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 186.6 ms