RNA–Protein interactions for RNA: ENST00000468211.6

PTCH1-210, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 1,254 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-210ENST00000468211 SCAPERQ9BY12 1400 aa40.09■■■■■ 4.01
PTCH1-210ENST00000468211 YEATS2Q9ULM3 1422 aa40.09■■■■■ 4.01
PTCH1-210ENST00000468211 ZFYVE16Q7Z3T8 1539 aa40.06■■■■■ 4
PTCH1-210ENST00000468211 POGZQ7Z3K3 1410 aa40.06■■■■■ 4
PTCH1-210ENST00000468211 CASKIN1Q8WXD9 1431 aa40.04■■■■■ 4
PTCH1-210ENST00000468211 EFCAB2Q5VUJ9 269 aa40.02■■■■■ 4
PTCH1-210ENST00000468211 MAGI2Q86UL8 1455 aa40■■■■□ 3.99
PTCH1-210ENST00000468211 CLIP1P30622 1438 aa40■■■■□ 3.99
PTCH1-210ENST00000468211 RIMS1Q86UR5 1692 aaKnown RBP39.98■■■■□ 3.99
PTCH1-210ENST00000468211 CDC42BPBQ9Y5S2 1711 aa39.96■■■■□ 3.99
PTCH1-210ENST00000468211 ARHGAP5Q13017 1502 aa39.96■■■■□ 3.99
PTCH1-210ENST00000468211 CCDC18Q5T9S5 1454 aa39.94■■■■□ 3.98
PTCH1-210ENST00000468211 FYCO1Q9BQS8 1478 aa39.88■■■■□ 3.98
PTCH1-210ENST00000468211 PREX2Q70Z35 1606 aa39.86■■■■□ 3.97
PTCH1-210ENST00000468211 ATP10AO60312 1499 aa39.82■■■■□ 3.97
PTCH1-210ENST00000468211 ZNF518AQ6AHZ1 1483 aa39.82■■■■□ 3.97
PTCH1-210ENST00000468211 AFAP1Q8N556 730 aa39.82■■■■□ 3.97
PTCH1-210ENST00000468211 KDM5CP41229 1560 aa39.81■■■■□ 3.96
PTCH1-210ENST00000468211 CDC42BPAQ5VT25 1732 aa39.8■■■■□ 3.96
PTCH1-210ENST00000468211 MLECQ14165 292 aa39.8■■■■□ 3.96
PTCH1-210ENST00000468211 FER1L4A9Z1Z3 1794 aa39.78■■■■□ 3.96
PTCH1-210ENST00000468211 ILDR1Q86SU0 546 aaPredicted RBP39.78■■■■□ 3.96
PTCH1-210ENST00000468211 C9orf84Q5VXU9 1444 aa39.76■■■■□ 3.96
PTCH1-210ENST00000468211 ARHGEF12Q9NZN5 1544 aa39.75■■■■□ 3.95
PTCH1-210ENST00000468211 LMTK3Q96Q04 1460 aa39.74■■■■□ 3.95
PTCH1-210ENST00000468211 ABCC1P33527 1531 aa39.73■■■■□ 3.95
PTCH1-210ENST00000468211 PLPPR3Q6T4P5 718 aa39.72■■■■□ 3.95
PTCH1-210ENST00000468211 ITSN2Q9NZM3 1697 aa39.71■■■■□ 3.95
PTCH1-210ENST00000468211 DIP2CQ9Y2E4 1556 aa39.69■■■■□ 3.94
PTCH1-210ENST00000468211 TRAPPC8Q9Y2L5 1435 aa39.69■■■■□ 3.94
PTCH1-210ENST00000468211 ABCA6Q8N139 1617 aa39.65■■■■□ 3.94
PTCH1-210ENST00000468211 MLH3Q9UHC1 1453 aa39.63■■■■□ 3.94
PTCH1-210ENST00000468211 MYT1LQ9UL68 1186 aa39.62■■■■□ 3.93
PTCH1-210ENST00000468211 GPATCH8Q9UKJ3 1502 aaKnown RBP39.6■■■■□ 3.93
PTCH1-210ENST00000468211 SAMD9LQ8IVG5 1584 aa39.59■■■■□ 3.93
PTCH1-210ENST00000468211 KIDINS220Q9ULH0 1771 aa39.57■■■■□ 3.93
PTCH1-210ENST00000468211 REREQ9P2R6 1566 aa39.57■■■■□ 3.92
PTCH1-210ENST00000468211 ZNF777Q9ULD5 760 aaPredicted RBP39.54■■■■□ 3.92
PTCH1-210ENST00000468211 HSPA2P54652 639 aa39.53■■■■□ 3.92
PTCH1-210ENST00000468211 CEP162Q5TB80 1403 aa39.5■■■■□ 3.91
PTCH1-210ENST00000468211 SYCP2Q9BX26 1530 aa39.5■■■■□ 3.91
PTCH1-210ENST00000468211 CEBPAP49715 358 aaPredicted RBP39.48■■■■□ 3.91
PTCH1-210ENST00000468211 MTUS2Q5JR59 1369 aa39.46■■■■□ 3.91
PTCH1-210ENST00000468211 AGLP35573 1532 aa39.44■■■■□ 3.9
PTCH1-210ENST00000468211 HNRNPMP52272 730 aaKnown RBP eCLIP39.43■■■■□ 3.9
PTCH1-210ENST00000468211 CCNB3Q8WWL7 1395 aa39.42■■■■□ 3.9
PTCH1-210ENST00000468211 CFDP1Q9UEE9 299 aaPredicted RBP39.4■■■■□ 3.9
PTCH1-210ENST00000468211 PREX1Q8TCU6 1659 aa39.4■■■■□ 3.9
PTCH1-210ENST00000468211 TIAM1Q13009 1591 aa39.37■■■■□ 3.89
PTCH1-210ENST00000468211 EHBP1L1Q8N3D4 1523 aa39.36■■■■□ 3.89
PTCH1-210ENST00000468211 KIAA1107Q9UPP5 1409 aa39.35■■■■□ 3.89
PTCH1-210ENST00000468211 C3P01024 1663 aa39.35■■■■□ 3.89
PTCH1-210ENST00000468211 SPAG9O60271 1321 aaKnown RBP39.33■■■■□ 3.89
PTCH1-210ENST00000468211 PLEKHH2Q8IVE3 1493 aa39.32■■■■□ 3.89
PTCH1-210ENST00000468211 ATP7AQ04656 1500 aa39.3■■■■□ 3.88
PTCH1-210ENST00000468211 INO80Q9ULG1 1556 aaPredicted RBP39.29■■■■□ 3.88
PTCH1-210ENST00000468211 SUPT6HQ7KZ85 1726 aaKnown RBP39.28■■■■□ 3.88
PTCH1-210ENST00000468211 SETD1BQ9UPS6 1966 aaKnown RBP39.28■■■■□ 3.88
PTCH1-210ENST00000468211 ZNF644Q9H582 1327 aaPredicted RBP39.28■■■■□ 3.88
PTCH1-210ENST00000468211 LOC105371045A0A1W2PR82 267 aa39.27■■■■□ 3.88
PTCH1-210ENST00000468211 FBXO41Q8TF61 875 aa39.2■■■■□ 3.87
PTCH1-210ENST00000468211 PLXNC1O60486 1568 aa39.2■■■■□ 3.87
PTCH1-210ENST00000468211 ESF1Q9H501 851 aaKnown RBP39.19■■■■□ 3.86
PTCH1-210ENST00000468211 MBD5Q9P267 1494 aa39.17■■■■□ 3.86
PTCH1-210ENST00000468211 UHRF1BP1Q6BDS2 1440 aa39.17■■■■□ 3.86
PTCH1-210ENST00000468211 STRCQ7RTU9 1775 aa39.16■■■■□ 3.86
PTCH1-210ENST00000468211 A2MP01023 1474 aa39.15■■■■□ 3.86
PTCH1-210ENST00000468211 NCOA2Q15596 1464 aa39.15■■■■□ 3.86
PTCH1-210ENST00000468211 CNTLNQ9NXG0 1405 aa39.14■■■■□ 3.86
PTCH1-210ENST00000468211 MROH2AA6NES4 1674 aa39.12■■■■□ 3.85
PTCH1-210ENST00000468211 ADGBQ8N7X0 1667 aa39.11■■■■□ 3.85
PTCH1-210ENST00000468211 VPS8Q8N3P4 1428 aa39.07■■■■□ 3.85
PTCH1-210ENST00000468211 CLTCQ00610 1675 aaKnown RBP39.07■■■■□ 3.85
PTCH1-210ENST00000468211 ZMYM3Q14202 1370 aa39.03■■■■□ 3.84
PTCH1-210ENST00000468211 CAMSAP2Q08AD1 1489 aa39.03■■■■□ 3.84
PTCH1-210ENST00000468211 RTEL1-TNFRSF6BF6WH68 1400 aa38.99■■■■□ 3.83
PTCH1-210ENST00000468211 GGT6Q6P531 493 aa38.98■■■■□ 3.83
PTCH1-210ENST00000468211 LRRC9Q6ZRR7 1453 aa38.98■■■■□ 3.83
PTCH1-210ENST00000468211 CCDC141Q6ZP82 1450 aa38.96■■■■□ 3.83
PTCH1-210ENST00000468211 NPATQ14207 1427 aa38.96■■■■□ 3.83
PTCH1-210ENST00000468211 CERKQ8TCT0 537 aa38.93■■■■□ 3.82
PTCH1-210ENST00000468211 DHX29Q7Z478 1369 aaKnown RBP38.9■■■■□ 3.82
PTCH1-210ENST00000468211 KANK4Q5T7N3 995 aaPredicted RBP38.89■■■■□ 3.82
PTCH1-210ENST00000468211 DMRT2Q9Y5R5 561 aa38.89■■■■□ 3.82
PTCH1-210ENST00000468211 ARHGEF5Q12774 1597 aa38.87■■■■□ 3.81
PTCH1-210ENST00000468211 PTPRKQ15262 1439 aa38.86■■■■□ 3.81
PTCH1-210ENST00000468211 MAP3K1Q13233 1512 aa38.85■■■■□ 3.81
PTCH1-210ENST00000468211 NCOA1Q15788 1441 aa38.83■■■■□ 3.81
PTCH1-210ENST00000468211 MYO3AQ8NEV4 1616 aa38.83■■■■□ 3.81
PTCH1-210ENST00000468211 RSPH4AQ5TD94 716 aa38.83■■■■□ 3.81
PTCH1-210ENST00000468211 PTPRTO14522 1441 aa38.82■■■■□ 3.81
PTCH1-210ENST00000468211 PPP6R1Q9UPN7 881 aa38.82■■■■□ 3.8
PTCH1-210ENST00000468211 CAMSAP1Q5T5Y3 1602 aa38.81■■■■□ 3.8
PTCH1-210ENST00000468211 ZNF142P52746 1687 aaPredicted RBP38.8■■■■□ 3.8
PTCH1-210ENST00000468211 KIF3BO15066 747 aa38.78■■■■□ 3.8
PTCH1-210ENST00000468211 CEP170BQ9Y4F5 1589 aaPredicted RBP38.74■■■■□ 3.79
PTCH1-210ENST00000468211 TSPY4P0CV99 314 aa38.71■■■■□ 3.79
PTCH1-210ENST00000468211 TSPY10P0CW01 314 aa38.71■■■■□ 3.79
PTCH1-210ENST00000468211 MYOM3Q5VTT5 1437 aa38.7■■■■□ 3.79
PTCH1-210ENST00000468211 MAST1Q9Y2H9 1570 aa38.69■■■■□ 3.78
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms