RNA–Protein interactions for RNA: ENST00000466845.1

LRCH3-212, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

TSL 3

Gene LRCH3, Length 662 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-212ENST00000466845 TMC2Q8TDI7 906 aa11.64□□□□□ -0.55
LRCH3-212ENST00000466845 PCDH10Q9P2E7 1040 aa11.63□□□□□ -0.55
LRCH3-212ENST00000466845 KIF3CO14782 793 aa11.62□□□□□ -0.55
LRCH3-212ENST00000466845 ZSWIM6Q9HCJ5 1215 aa11.62□□□□□ -0.55
LRCH3-212ENST00000466845 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.62□□□□□ -0.55
LRCH3-212ENST00000466845 POTEMA6NI47 508 aa11.61□□□□□ -0.55
LRCH3-212ENST00000466845 ZNF710Q8N1W2 664 aa11.61□□□□□ -0.55
LRCH3-212ENST00000466845 LCE2DQ5TA82 110 aaPredicted RBP11.6□□□□□ -0.55
LRCH3-212ENST00000466845 POTEGQ6S5H5 508 aa11.6□□□□□ -0.55
LRCH3-212ENST00000466845 C2orf72A6NCS6 295 aa11.58□□□□□ -0.56
LRCH3-212ENST00000466845 HOXB3P14651 431 aaPredicted RBP11.58□□□□□ -0.56
LRCH3-212ENST00000466845 GPHNQ9NQX3 736 aaPredicted RBP11.56□□□□□ -0.56
LRCH3-212ENST00000466845 HOXB1P14653 301 aaPredicted RBP11.54□□□□□ -0.56
LRCH3-212ENST00000466845 SPRYD3Q8NCJ5 442 aa11.54□□□□□ -0.56
LRCH3-212ENST00000466845 SLC24A1O60721 1099 aa11.53□□□□□ -0.56
LRCH3-212ENST00000466845 SLC34A2O95436 690 aa11.53□□□□□ -0.56
LRCH3-212ENST00000466845 PDE4AP27815 886 aa11.53□□□□□ -0.56
LRCH3-212ENST00000466845 FOXK1P85037 733 aa11.53□□□□□ -0.56
LRCH3-212ENST00000466845 CRISPLD2Q9H0B8 497 aa11.48□□□□□ -0.57
LRCH3-212ENST00000466845 EMP3P54852 163 aa11.47□□□□□ -0.57
LRCH3-212ENST00000466845 GPR153Q6NV75 609 aa11.45□□□□□ -0.58
LRCH3-212ENST00000466845 PLPP6Q8IY26 295 aa11.44□□□□□ -0.58
LRCH3-212ENST00000466845 TBC1D12O60347 775 aa11.43□□□□□ -0.58
LRCH3-212ENST00000466845 MARVELD3Q96A59 401 aa11.43□□□□□ -0.58
LRCH3-212ENST00000466845 DSG2Q14126 1118 aa11.42□□□□□ -0.58
LRCH3-212ENST00000466845 PTCD2Q8WV60 388 aaKnown RBP11.41□□□□□ -0.58
LRCH3-212ENST00000466845 PAXIP1Q6ZW49 1069 aaPredicted RBP11.4□□□□□ -0.58
LRCH3-212ENST00000466845 ARSIQ5FYB1 569 aa11.39□□□□□ -0.59
LRCH3-212ENST00000466845 PPP1R15BQ5SWA1 713 aa11.39□□□□□ -0.59
LRCH3-212ENST00000466845 CDAN1Q8IWY9 1227 aa11.39□□□□□ -0.59
LRCH3-212ENST00000466845 PCDHGA4Q9Y5G9 962 aa11.39□□□□□ -0.59
LRCH3-212ENST00000466845 ERBB3P21860 1342 aa11.38□□□□□ -0.59
LRCH3-212ENST00000466845 NCKAP5LQ9HCH0 1330 aa11.38□□□□□ -0.59
LRCH3-212ENST00000466845 MFSD10Q14728 455 aa11.38□□□□□ -0.59
LRCH3-212ENST00000466845 DDX27Q96GQ7 796 aaKnown RBP11.38□□□□□ -0.59
LRCH3-212ENST00000466845 FAM205CA6NFA0 338 aa11.37□□□□□ -0.59
LRCH3-212ENST00000466845 CFAP44Q96MT7 982 aa11.37□□□□□ -0.59
LRCH3-212ENST00000466845 LARP6Q9BRS8 491 aaKnown RBP11.37□□□□□ -0.59
LRCH3-212ENST00000466845 HS3ST6Q96QI5 342 aa11.36□□□□□ -0.59
LRCH3-212ENST00000466845 PSDA5PKW4 1024 aaPredicted RBP11.34□□□□□ -0.59
LRCH3-212ENST00000466845 ZNF316A6NFI3 1004 aaPredicted RBP11.32□□□□□ -0.6
LRCH3-212ENST00000466845 OXER1Q8TDS5 423 aa11.31□□□□□ -0.6
LRCH3-212ENST00000466845 CADPS2Q86UW7 1296 aa11.3□□□□□ -0.6
LRCH3-212ENST00000466845 NUDT7P0C024 238 aa11.29□□□□□ -0.6
LRCH3-212ENST00000466845 ZNF687Q8N1G0 1237 aa11.29□□□□□ -0.6
LRCH3-212ENST00000466845 VARS2Q5ST30 1063 aaKnown RBP11.28□□□□□ -0.6
LRCH3-212ENST00000466845 KDM4FA0A1W2PPD8 638 aa11.26□□□□□ -0.61
LRCH3-212ENST00000466845 KHSRPQ92945 711 aaKnown RBP eCLIP11.26□□□□□ -0.61
LRCH3-212ENST00000466845 POTEB3A0JP26 581 aa11.25□□□□□ -0.61
LRCH3-212ENST00000466845 POTEBQ6S5H4 581 aa11.25□□□□□ -0.61
LRCH3-212ENST00000466845 WDR70Q9NW82 654 aa11.24□□□□□ -0.61
LRCH3-212ENST00000466845 LHX6Q9UPM6 363 aa11.24□□□□□ -0.61
LRCH3-212ENST00000466845 CAMK2BQ13554 666 aa11.23□□□□□ -0.61
LRCH3-212ENST00000466845 PBX2P40425 430 aa11.22□□□□□ -0.61
LRCH3-212ENST00000466845 MAP3K9P80192 1104 aa11.22□□□□□ -0.61
LRCH3-212ENST00000466845 UPF1Q92900 1129 aaKnown RBP eCLIP11.21□□□□□ -0.61
LRCH3-212ENST00000466845 ANO8Q9HCE9 1232 aaPredicted RBP11.21□□□□□ -0.61
LRCH3-212ENST00000466845 PPP4R3BQ5MIZ7 849 aa11.17□□□□□ -0.62
LRCH3-212ENST00000466845 EVI5O60447 810 aa11.16□□□□□ -0.62
LRCH3-212ENST00000466845 PLCB2Q00722 1185 aa11.16□□□□□ -0.62
LRCH3-212ENST00000466845 KRTAP3-3Q9BYR6 98 aa11.16□□□□□ -0.62
LRCH3-212ENST00000466845 KRTAP3-2Q9BYR7 98 aa11.16□□□□□ -0.62
LRCH3-212ENST00000466845 EMILIN3Q9NT22 766 aa11.16□□□□□ -0.62
LRCH3-212ENST00000466845 E2F4Q16254 413 aa11.15□□□□□ -0.62
LRCH3-212ENST00000466845 ARIH1Q9Y4X5 557 aaPredicted RBP11.14□□□□□ -0.63
LRCH3-212ENST00000466845 PLSCR2Q9NRY7 297 aa11.13□□□□□ -0.63
LRCH3-212ENST00000466845 KCNH8Q96L42 1107 aa11.12□□□□□ -0.63
LRCH3-212ENST00000466845 ARHGAP33O14559 1287 aa11.11□□□□□ -0.63
LRCH3-212ENST00000466845 PTGER2P43116 358 aa11.11□□□□□ -0.63
LRCH3-212ENST00000466845 TSHZ2Q9NRE2 1034 aa11.11□□□□□ -0.63
LRCH3-212ENST00000466845 SPDYE16A6NNV3 312 aaPredicted RBP11.1□□□□□ -0.63
LRCH3-212ENST00000466845 SPNS2Q8IVW8 549 aa11.1□□□□□ -0.63
LRCH3-212ENST00000466845 JPH4Q96JJ6 628 aa11.1□□□□□ -0.63
LRCH3-212ENST00000466845 FOSBP53539 338 aa11.09□□□□□ -0.63
LRCH3-212ENST00000466845 ZNF454Q8N9F8 522 aa11.08□□□□□ -0.64
LRCH3-212ENST00000466845 DPYSL4O14531 572 aa11.06□□□□□ -0.64
LRCH3-212ENST00000466845 LSM11P83369 360 aaKnown RBP eCLIP11.06□□□□□ -0.64
LRCH3-212ENST00000466845 PHF14O94880 888 aa11.05□□□□□ -0.64
LRCH3-212ENST00000466845 FBXW7Q969H0 707 aa11.05□□□□□ -0.64
LRCH3-212ENST00000466845 ZDHHC16Q969W1 377 aa11.05□□□□□ -0.64
LRCH3-212ENST00000466845 BCL2L12Q9HB09 334 aa11.05□□□□□ -0.64
LRCH3-212ENST00000466845 EPAS1Q99814 870 aa11.04□□□□□ -0.64
LRCH3-212ENST00000466845 TK2O00142 265 aa11.03□□□□□ -0.64
LRCH3-212ENST00000466845 PDIA6Q15084 440 aa11.03□□□□□ -0.64
LRCH3-212ENST00000466845 ANKRD13DQ6ZTN6 518 aa11.02□□□□□ -0.65
LRCH3-212ENST00000466845 PTPREP23469 700 aa11.01□□□□□ -0.65
LRCH3-212ENST00000466845 MMRN1Q13201 1228 aa11.01□□□□□ -0.65
LRCH3-212ENST00000466845 TYW1BQ6NUM6 668 aa11.01□□□□□ -0.65
LRCH3-212ENST00000466845 POTEEQ6S8J3 1075 aa11.01□□□□□ -0.65
LRCH3-212ENST00000466845 ARHGEF1Q92888 912 aaKnown RBP11□□□□□ -0.65
LRCH3-212ENST00000466845 P3H3Q8IVL6 736 aa10.99□□□□□ -0.65
LRCH3-212ENST00000466845 SLC4A5Q9BY07 1137 aa10.99□□□□□ -0.65
LRCH3-212ENST00000466845 PCDHGA10Q9Y5H3 936 aa10.99□□□□□ -0.65
LRCH3-212ENST00000466845 AXIN2Q9Y2T1 843 aa10.98□□□□□ -0.65
LRCH3-212ENST00000466845 KCNK17Q96T54 332 aa10.96□□□□□ -0.65
LRCH3-212ENST00000466845 ADGRD1Q6QNK2 874 aa10.95□□□□□ -0.66
LRCH3-212ENST00000466845 PSEN2P49810 448 aa10.94□□□□□ -0.66
LRCH3-212ENST00000466845 ADAM33Q9BZ11 813 aa10.94□□□□□ -0.66
LRCH3-212ENST00000466845 MYT1LQ9UL68 1186 aa10.94□□□□□ -0.66
LRCH3-212ENST00000466845 HAP1P54257 671 aaPredicted RBP10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms