RNA–Protein interactions for RNA: ENST00000466100.1

VCP-204, Transcript of valosin containing protein, humanhuman

TSL 2

Gene VCP, Length 508 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-204ENST00000466100 FGD6Q6ZV73 1430 aa17.26■□□□□ 0.35
VCP-204ENST00000466100 CFAP74Q9C0B2 1584 aa17.26■□□□□ 0.35
VCP-204ENST00000466100 ARHGAP5Q13017 1502 aa17.26■□□□□ 0.35
VCP-204ENST00000466100 SAMD9LQ8IVG5 1584 aa17.25■□□□□ 0.35
VCP-204ENST00000466100 MIA2Q96PC5 1412 aa17.25■□□□□ 0.35
VCP-204ENST00000466100 PTPN23Q9H3S7 1636 aa17.25■□□□□ 0.35
VCP-204ENST00000466100 RRBP1Q9P2E9 1410 aaKnown RBP17.23■□□□□ 0.35
VCP-204ENST00000466100 TCOF1Q13428 1488 aaKnown RBP17.23■□□□□ 0.35
VCP-204ENST00000466100 FANCAO15360 1455 aa17.22■□□□□ 0.35
VCP-204ENST00000466100 ABCC1P33527 1531 aa17.21■□□□□ 0.35
VCP-204ENST00000466100 CAMSAP2Q08AD1 1489 aa17.2■□□□□ 0.34
VCP-204ENST00000466100 NEO1Q92859 1461 aa17.2■□□□□ 0.34
VCP-204ENST00000466100 TEX14Q8IWB6 1497 aa17.19■□□□□ 0.34
VCP-204ENST00000466100 CFDP1Q9UEE9 299 aaPredicted RBP17.18■□□□□ 0.34
VCP-204ENST00000466100 SYCP2Q9BX26 1530 aa17.16■□□□□ 0.34
VCP-204ENST00000466100 ARHGEF12Q9NZN5 1544 aa17.16■□□□□ 0.34
VCP-204ENST00000466100 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.15■□□□□ 0.34
VCP-204ENST00000466100 ARHGEF5Q12774 1597 aa17.15■□□□□ 0.34
VCP-204ENST00000466100 AKNAQ7Z591 1439 aa17.15■□□□□ 0.34
VCP-204ENST00000466100 TRHP20396 242 aaPredicted RBP17.15■□□□□ 0.34
VCP-204ENST00000466100 EFCAB2Q5VUJ9 269 aa17.15■□□□□ 0.34
VCP-204ENST00000466100 PLEKHH2Q8IVE3 1493 aa17.15■□□□□ 0.34
VCP-204ENST00000466100 CROCC2H7BZ55 1655 aa17.15■□□□□ 0.34
VCP-204ENST00000466100 ZNF644Q9H582 1327 aaPredicted RBP17.15■□□□□ 0.34
VCP-204ENST00000466100 DNMT1P26358 1616 aaKnown RBP17.14■□□□□ 0.33
VCP-204ENST00000466100 KIAA1107Q9UPP5 1409 aa17.14■□□□□ 0.33
VCP-204ENST00000466100 RICTORQ6R327 1708 aa17.14■□□□□ 0.33
VCP-204ENST00000466100 ADGRL1O94910 1474 aa17.13■□□□□ 0.33
VCP-204ENST00000466100 MBD5Q9P267 1494 aa17.13■□□□□ 0.33
VCP-204ENST00000466100 FRMPD1Q5SYB0 1578 aa17.11■□□□□ 0.33
VCP-204ENST00000466100 ZNF777Q9ULD5 760 aaPredicted RBP17.09■□□□□ 0.33
VCP-204ENST00000466100 KDM5CP41229 1560 aa17.09■□□□□ 0.33
VCP-204ENST00000466100 CCDC141Q6ZP82 1450 aa17.08■□□□□ 0.32
VCP-204ENST00000466100 POGZQ7Z3K3 1410 aa17.08■□□□□ 0.32
VCP-204ENST00000466100 SCAPERQ9BY12 1400 aa17.08■□□□□ 0.32
VCP-204ENST00000466100 COL17A1Q9UMD9 1497 aaPredicted RBP17.07■□□□□ 0.32
VCP-204ENST00000466100 TRAPPC8Q9Y2L5 1435 aa17.07■□□□□ 0.32
VCP-204ENST00000466100 MAST1Q9Y2H9 1570 aa17.06■□□□□ 0.32
VCP-204ENST00000466100 ABCC5O15440 1437 aa17.06■□□□□ 0.32
VCP-204ENST00000466100 DAPK1P53355 1430 aa17.06■□□□□ 0.32
VCP-204ENST00000466100 INO80Q9ULG1 1556 aaPredicted RBP17.06■□□□□ 0.32
VCP-204ENST00000466100 DENND4BO75064 1496 aaPredicted RBP17.05■□□□□ 0.32
VCP-204ENST00000466100 SHANK2Q9UPX8 1470 aa17.05■□□□□ 0.32
VCP-204ENST00000466100 ADGBQ8N7X0 1667 aa17.05■□□□□ 0.32
VCP-204ENST00000466100 FAM50AQ14320 339 aaKnown RBP17.05■□□□□ 0.32
VCP-204ENST00000466100 ZMYM4Q5VZL5 1548 aa17.05■□□□□ 0.32
VCP-204ENST00000466100 ZNF518AQ6AHZ1 1483 aa17.05■□□□□ 0.32
VCP-204ENST00000466100 KDM6BO15054 1643 aa17.04■□□□□ 0.32
VCP-204ENST00000466100 HNRNPMP52272 730 aaKnown RBP eCLIP17.04■□□□□ 0.32
VCP-204ENST00000466100 PTPRKQ15262 1439 aa17.04■□□□□ 0.32
VCP-204ENST00000466100 ZFYVE16Q7Z3T8 1539 aa17.03■□□□□ 0.32
VCP-204ENST00000466100 KIDINS220Q9ULH0 1771 aa17.02■□□□□ 0.32
VCP-204ENST00000466100 HECW2Q9P2P5 1572 aa17.02■□□□□ 0.31
VCP-204ENST00000466100 ADGRL2O95490 1459 aa17■□□□□ 0.31
VCP-204ENST00000466100 PLXNC1O60486 1568 aa17■□□□□ 0.31
VCP-204ENST00000466100 C9orf84Q5VXU9 1444 aa16.99■□□□□ 0.31
VCP-204ENST00000466100 RSPH4AQ5TD94 716 aa16.99■□□□□ 0.31
VCP-204ENST00000466100 ATP7AQ04656 1500 aa16.99■□□□□ 0.31
VCP-204ENST00000466100 MLH3Q9UHC1 1453 aa16.99■□□□□ 0.31
VCP-204ENST00000466100 TRIM26Q12899 539 aaPredicted RBP16.98■□□□□ 0.31
VCP-204ENST00000466100 AFAP1Q8N556 730 aa16.98■□□□□ 0.31
VCP-204ENST00000466100 ABCA6Q8N139 1617 aa16.97■□□□□ 0.31
VCP-204ENST00000466100 RAPGEF3O95398 923 aa16.97■□□□□ 0.31
VCP-204ENST00000466100 RTEL1-TNFRSF6BF6WH68 1400 aa16.96■□□□□ 0.31
VCP-204ENST00000466100 GCC2Q8IWJ2 1684 aa16.95■□□□□ 0.3
VCP-204ENST00000466100 DIP2CQ9Y2E4 1556 aa16.95■□□□□ 0.3
VCP-204ENST00000466100 ARHGEF40Q8TER5 1519 aa16.95■□□□□ 0.3
VCP-204ENST00000466100 MAGI2Q86UL8 1455 aa16.94■□□□□ 0.3
VCP-204ENST00000466100 ROCK1Q13464 1354 aa16.94■□□□□ 0.3
VCP-204ENST00000466100 NCOA1Q15788 1441 aa16.93■□□□□ 0.3
VCP-204ENST00000466100 SPAG9O60271 1321 aaKnown RBP16.93■□□□□ 0.3
VCP-204ENST00000466100 ITGAEP38570 1179 aa16.91■□□□□ 0.3
VCP-204ENST00000466100 YEATS2Q9ULM3 1422 aa16.9■□□□□ 0.3
VCP-204ENST00000466100 TSPY4P0CV99 314 aa16.9■□□□□ 0.3
VCP-204ENST00000466100 TSPY10P0CW01 314 aa16.9■□□□□ 0.3
VCP-204ENST00000466100 REREQ9P2R6 1566 aa16.89■□□□□ 0.3
VCP-204ENST00000466100 ANKRD30AQ9BXX3 1397 aa16.89■□□□□ 0.29
VCP-204ENST00000466100 HFM1A2PYH4 1435 aa16.88■□□□□ 0.29
VCP-204ENST00000466100 SIGLEC1Q9BZZ2 1709 aa16.88■□□□□ 0.29
VCP-204ENST00000466100 CHIC2Q9UKJ5 165 aa16.88■□□□□ 0.29
VCP-204ENST00000466100 NAIPQ13075 1403 aa16.87■□□□□ 0.29
VCP-204ENST00000466100 DUOX2Q9NRD8 1548 aa16.87■□□□□ 0.29
VCP-204ENST00000466100 KIF15Q9NS87 1388 aa16.87■□□□□ 0.29
VCP-204ENST00000466100 BCORL1Q5H9F3 1711 aa16.87■□□□□ 0.29
VCP-204ENST00000466100 EIF2AK4Q9P2K8 1649 aaKnown RBP16.85■□□□□ 0.29
VCP-204ENST00000466100 A2MP01023 1474 aa16.84■□□□□ 0.29
VCP-204ENST00000466100 ATP10AO60312 1499 aa16.83■□□□□ 0.28
VCP-204ENST00000466100 ERBINQ96RT1 1412 aa16.82■□□□□ 0.28
VCP-204ENST00000466100 RRP7BPQ9NSQ0 103 aa16.82■□□□□ 0.28
VCP-204ENST00000466100 DHX29Q7Z478 1369 aaKnown RBP16.81■□□□□ 0.28
VCP-204ENST00000466100 DEPDC5O75140 1603 aa16.81■□□□□ 0.28
VCP-204ENST00000466100 RNF17Q9BXT8 1623 aaKnown RBP16.81■□□□□ 0.28
VCP-204ENST00000466100 PCGF6Q9BYE7 350 aa16.8■□□□□ 0.28
VCP-204ENST00000466100 AGLP35573 1532 aa16.8■□□□□ 0.28
VCP-204ENST00000466100 ANKRD50Q9ULJ7 1429 aa16.79■□□□□ 0.28
VCP-204ENST00000466100 MROH1Q8NDA8 1641 aa16.79■□□□□ 0.28
VCP-204ENST00000466100 UNC13BO14795 1591 aa16.79■□□□□ 0.28
VCP-204ENST00000466100 SETD5Q9C0A6 1442 aa16.79■□□□□ 0.28
VCP-204ENST00000466100 MYT1LQ9UL68 1186 aa16.77■□□□□ 0.28
VCP-204ENST00000466100 RAB3GAP2Q9H2M9 1393 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms