RNA–Protein interactions for RNA: ENST00000464454.1

CLK1-208, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 484 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-208ENST00000464454 MICALL2Q8IY33 904 aa10.33□□□□□ -0.76
CLK1-208ENST00000464454 FAM163AQ96GL9 167 aaPredicted RBP10.32□□□□□ -0.76
CLK1-208ENST00000464454 TMEM121BQ9BXQ6 578 aaPredicted RBP10.32□□□□□ -0.76
CLK1-208ENST00000464454 TSHZ2Q9NRE2 1034 aa10.31□□□□□ -0.76
CLK1-208ENST00000464454 C3orf67Q6ZVT6 689 aa10.3□□□□□ -0.76
CLK1-208ENST00000464454 VSIG10Q8N0Z9 540 aa10.27□□□□□ -0.77
CLK1-208ENST00000464454 LCE2DQ5TA82 110 aaPredicted RBP10.25□□□□□ -0.77
CLK1-208ENST00000464454 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.24□□□□□ -0.77
CLK1-208ENST00000464454 PDE4AP27815 886 aa10.23□□□□□ -0.77
CLK1-208ENST00000464454 CADPS2Q86UW7 1296 aa10.23□□□□□ -0.77
CLK1-208ENST00000464454 TMC2Q8TDI7 906 aa10.22□□□□□ -0.77
CLK1-208ENST00000464454 SLAIN1Q8ND83 568 aa10.2□□□□□ -0.78
CLK1-208ENST00000464454 CRISPLD2Q9H0B8 497 aa10.2□□□□□ -0.78
CLK1-208ENST00000464454 GPHNQ9NQX3 736 aaPredicted RBP10.19□□□□□ -0.78
CLK1-208ENST00000464454 WDR70Q9NW82 654 aa10.19□□□□□ -0.78
CLK1-208ENST00000464454 NCKAP5LQ9HCH0 1330 aa10.18□□□□□ -0.78
CLK1-208ENST00000464454 SNPHO15079 494 aa10.18□□□□□ -0.78
CLK1-208ENST00000464454 DDX27Q96GQ7 796 aaKnown RBP10.16□□□□□ -0.78
CLK1-208ENST00000464454 LARP6Q9BRS8 491 aaKnown RBP10.16□□□□□ -0.78
CLK1-208ENST00000464454 KIF3CO14782 793 aa10.15□□□□□ -0.78
CLK1-208ENST00000464454 MFSD10Q14728 455 aa10.15□□□□□ -0.78
CLK1-208ENST00000464454 C2orf72A6NCS6 295 aa10.14□□□□□ -0.79
CLK1-208ENST00000464454 FOXK1P85037 733 aa10.13□□□□□ -0.79
CLK1-208ENST00000464454 KDM2AQ9Y2K7 1162 aa10.13□□□□□ -0.79
CLK1-208ENST00000464454 PPP1R15BQ5SWA1 713 aa10.12□□□□□ -0.79
CLK1-208ENST00000464454 TMEM92Q6UXU6 159 aa10.12□□□□□ -0.79
CLK1-208ENST00000464454 CDAN1Q8IWY9 1227 aa10.12□□□□□ -0.79
CLK1-208ENST00000464454 ST18O60284 1047 aa10.09□□□□□ -0.79
CLK1-208ENST00000464454 DSG2Q14126 1118 aa10.09□□□□□ -0.79
CLK1-208ENST00000464454 P3H3Q8IVL6 736 aa10.09□□□□□ -0.79
CLK1-208ENST00000464454 PLPP6Q8IY26 295 aa10.07□□□□□ -0.8
CLK1-208ENST00000464454 E2F4Q16254 413 aa10.06□□□□□ -0.8
CLK1-208ENST00000464454 CAMK2BQ13554 666 aa10.03□□□□□ -0.8
CLK1-208ENST00000464454 DOK7Q18PE1 504 aa10.01□□□□□ -0.81
CLK1-208ENST00000464454 RIMBP2O15034 1052 aa9.99□□□□□ -0.81
CLK1-208ENST00000464454 SLC34A2O95436 690 aa9.99□□□□□ -0.81
CLK1-208ENST00000464454 KCNV2Q8TDN2 545 aa9.98□□□□□ -0.81
CLK1-208ENST00000464454 ARHGEF1Q92888 912 aaKnown RBP9.97□□□□□ -0.81
CLK1-208ENST00000464454 ARIH1Q9Y4X5 557 aaPredicted RBP9.97□□□□□ -0.81
CLK1-208ENST00000464454 TBC1D12O60347 775 aa9.96□□□□□ -0.82
CLK1-208ENST00000464454 ZNF710Q8N1W2 664 aa9.95□□□□□ -0.82
CLK1-208ENST00000464454 PTCD2Q8WV60 388 aaKnown RBP9.95□□□□□ -0.82
CLK1-208ENST00000464454 ZSWIM6Q9HCJ5 1215 aa9.95□□□□□ -0.82
CLK1-208ENST00000464454 OXER1Q8TDS5 423 aa9.94□□□□□ -0.82
CLK1-208ENST00000464454 EMILIN3Q9NT22 766 aa9.94□□□□□ -0.82
CLK1-208ENST00000464454 ZNF316A6NFI3 1004 aaPredicted RBP9.93□□□□□ -0.82
CLK1-208ENST00000464454 HOXB3P14651 431 aaPredicted RBP9.93□□□□□ -0.82
CLK1-208ENST00000464454 MAP3K9P80192 1104 aa9.93□□□□□ -0.82
CLK1-208ENST00000464454 UPF1Q92900 1129 aaKnown RBP eCLIP9.92□□□□□ -0.82
CLK1-208ENST00000464454 DPYSL4O14531 572 aa9.9□□□□□ -0.82
CLK1-208ENST00000464454 PCDHGA4Q9Y5G9 962 aa9.9□□□□□ -0.82
CLK1-208ENST00000464454 SPDYE16A6NNV3 312 aaPredicted RBP9.89□□□□□ -0.83
CLK1-208ENST00000464454 NBR1Q14596 966 aa9.89□□□□□ -0.83
CLK1-208ENST00000464454 EMP3P54852 163 aa9.88□□□□□ -0.83
CLK1-208ENST00000464454 MMRN1Q13201 1228 aa9.87□□□□□ -0.83
CLK1-208ENST00000464454 PDIA6Q15084 440 aa9.87□□□□□ -0.83
CLK1-208ENST00000464454 SPNS2Q8IVW8 549 aa9.87□□□□□ -0.83
CLK1-208ENST00000464454 BCANQ96GW7 911 aa9.86□□□□□ -0.83
CLK1-208ENST00000464454 MARVELD3Q96A59 401 aa9.85□□□□□ -0.83
CLK1-208ENST00000464454 EVI5O60447 810 aa9.84□□□□□ -0.83
CLK1-208ENST00000464454 ARSIQ5FYB1 569 aa9.84□□□□□ -0.83
CLK1-208ENST00000464454 GPR153Q6NV75 609 aa9.84□□□□□ -0.83
CLK1-208ENST00000464454 HOXB1P14653 301 aaPredicted RBP9.83□□□□□ -0.84
CLK1-208ENST00000464454 NUDT7P0C024 238 aa9.8□□□□□ -0.84
CLK1-208ENST00000464454 ANO8Q9HCE9 1232 aaPredicted RBP9.8□□□□□ -0.84
CLK1-208ENST00000464454 TULP1O00294 542 aaPredicted RBP9.79□□□□□ -0.84
CLK1-208ENST00000464454 KDM4FA0A1W2PPD8 638 aa9.78□□□□□ -0.84
CLK1-208ENST00000464454 PTGER2P43116 358 aa9.78□□□□□ -0.84
CLK1-208ENST00000464454 SMYD5Q6GMV2 418 aa9.78□□□□□ -0.84
CLK1-208ENST00000464454 HS3ST6Q96QI5 342 aa9.78□□□□□ -0.84
CLK1-208ENST00000464454 PSDA5PKW4 1024 aaPredicted RBP9.77□□□□□ -0.85
CLK1-208ENST00000464454 SEMA3EO15041 775 aa9.77□□□□□ -0.85
CLK1-208ENST00000464454 KHSRPQ92945 711 aaKnown RBP eCLIP9.77□□□□□ -0.85
CLK1-208ENST00000464454 TESPA1A2RU30 521 aaPredicted RBP9.76□□□□□ -0.85
CLK1-208ENST00000464454 FAM205CA6NFA0 338 aa9.75□□□□□ -0.85
CLK1-208ENST00000464454 PHF14O94880 888 aa9.73□□□□□ -0.85
CLK1-208ENST00000464454 JPH4Q96JJ6 628 aa9.73□□□□□ -0.85
CLK1-208ENST00000464454 LHX6Q9UPM6 363 aa9.73□□□□□ -0.85
CLK1-208ENST00000464454 DDX12PQ92771 950 aa9.72□□□□□ -0.85
CLK1-208ENST00000464454 EPAS1Q99814 870 aa9.72□□□□□ -0.85
CLK1-208ENST00000464454 GRXCR2A6NFK2 248 aa9.71□□□□□ -0.86
CLK1-208ENST00000464454 MLLT3P42568 568 aaPredicted RBP9.7□□□□□ -0.86
CLK1-208ENST00000464454 FOSBP53539 338 aa9.7□□□□□ -0.86
CLK1-208ENST00000464454 PPP4R3BQ5MIZ7 849 aa9.7□□□□□ -0.86
CLK1-208ENST00000464454 ZNF454Q8N9F8 522 aa9.7□□□□□ -0.86
CLK1-208ENST00000464454 FBXW7Q969H0 707 aa9.7□□□□□ -0.86
CLK1-208ENST00000464454 KRTAP3-3Q9BYR6 98 aa9.7□□□□□ -0.86
CLK1-208ENST00000464454 KRTAP3-2Q9BYR7 98 aa9.7□□□□□ -0.86
CLK1-208ENST00000464454 ERBB3P21860 1342 aa9.7□□□□□ -0.86
CLK1-208ENST00000464454 TYW1BQ6NUM6 668 aa9.69□□□□□ -0.86
CLK1-208ENST00000464454 PCDHGA10Q9Y5H3 936 aa9.68□□□□□ -0.86
CLK1-208ENST00000464454 ZDHHC16Q969W1 377 aa9.67□□□□□ -0.86
CLK1-208ENST00000464454 OSBPP22059 807 aa9.65□□□□□ -0.86
CLK1-208ENST00000464454 VARS2Q5ST30 1063 aaKnown RBP9.65□□□□□ -0.86
CLK1-208ENST00000464454 EN1Q05925 392 aaPredicted RBP9.64□□□□□ -0.87
CLK1-208ENST00000464454 POTEB3A0JP26 581 aa9.63□□□□□ -0.87
CLK1-208ENST00000464454 POTEBQ6S5H4 581 aa9.63□□□□□ -0.87
CLK1-208ENST00000464454 KCNH8Q96L42 1107 aa9.63□□□□□ -0.87
CLK1-208ENST00000464454 MAP3K7O43318 606 aa9.62□□□□□ -0.87
CLK1-208ENST00000464454 LMOD2Q6P5Q4 547 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms