RNA–Protein interactions for RNA: ENST00000463478.1

HERC4-208, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 3

Gene HERC4, Length 546 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-208ENST00000463478 KCNV2Q8TDN2 545 aa9.95□□□□□ -0.82
HERC4-208ENST00000463478 PLCG2P16885 1265 aa9.93□□□□□ -0.82
HERC4-208ENST00000463478 MAMSTRQ6ZN01 415 aa9.92□□□□□ -0.82
HERC4-208ENST00000463478 NCKAP5LQ9HCH0 1330 aa9.91□□□□□ -0.82
HERC4-208ENST00000463478 ILDR1Q86SU0 546 aaPredicted RBP9.91□□□□□ -0.82
HERC4-208ENST00000463478 PDE4AP27815 886 aa9.9□□□□□ -0.82
HERC4-208ENST00000463478 LARP6Q9BRS8 491 aaKnown RBP9.9□□□□□ -0.82
HERC4-208ENST00000463478 OCEL1Q9H607 264 aa9.9□□□□□ -0.82
HERC4-208ENST00000463478 E2F4Q16254 413 aa9.88□□□□□ -0.83
HERC4-208ENST00000463478 DPY19L2Q6NUT2 758 aa9.88□□□□□ -0.83
HERC4-208ENST00000463478 SCUBE2Q9NQ36 999 aa9.88□□□□□ -0.83
HERC4-208ENST00000463478 CRISPLD2Q9H0B8 497 aa9.87□□□□□ -0.83
HERC4-208ENST00000463478 PDCD7Q8N8D1 485 aaKnown RBP9.85□□□□□ -0.83
HERC4-208ENST00000463478 DDX27Q96GQ7 796 aaKnown RBP9.85□□□□□ -0.83
HERC4-208ENST00000463478 MFSD10Q14728 455 aa9.84□□□□□ -0.83
HERC4-208ENST00000463478 ARHGEF1Q92888 912 aaKnown RBP9.83□□□□□ -0.84
HERC4-208ENST00000463478 MICALL2Q8IY33 904 aa9.82□□□□□ -0.84
HERC4-208ENST00000463478 G3V3G9 751 aa9.81□□□□□ -0.84
HERC4-208ENST00000463478 GPHNQ9NQX3 736 aaPredicted RBP9.79□□□□□ -0.84
HERC4-208ENST00000463478 BOLA1Q9Y3E2 137 aa9.79□□□□□ -0.84
HERC4-208ENST00000463478 PPP1R15BQ5SWA1 713 aa9.78□□□□□ -0.84
HERC4-208ENST00000463478 LCE2DQ5TA82 110 aaPredicted RBP9.76□□□□□ -0.85
HERC4-208ENST00000463478 TMC2Q8TDI7 906 aa9.76□□□□□ -0.85
HERC4-208ENST00000463478 L3MBTL3Q96JM7 780 aaPredicted RBP9.75□□□□□ -0.85
HERC4-208ENST00000463478 TULP1O00294 542 aaPredicted RBP9.74□□□□□ -0.85
HERC4-208ENST00000463478 CAMK2BQ13554 666 aa9.74□□□□□ -0.85
HERC4-208ENST00000463478 SEMA3EO15041 775 aa9.73□□□□□ -0.85
HERC4-208ENST00000463478 DSG2Q14126 1118 aa9.73□□□□□ -0.85
HERC4-208ENST00000463478 LMOD2Q6P5Q4 547 aa9.73□□□□□ -0.85
HERC4-208ENST00000463478 TMEM121BQ9BXQ6 578 aaPredicted RBP9.73□□□□□ -0.85
HERC4-208ENST00000463478 SLAIN1Q8ND83 568 aa9.72□□□□□ -0.85
HERC4-208ENST00000463478 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.71□□□□□ -0.86
HERC4-208ENST00000463478 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.71□□□□□ -0.86
HERC4-208ENST00000463478 C2orf72A6NCS6 295 aa9.7□□□□□ -0.86
HERC4-208ENST00000463478 C3orf67Q6ZVT6 689 aa9.7□□□□□ -0.86
HERC4-208ENST00000463478 ARIH1Q9Y4X5 557 aaPredicted RBP9.7□□□□□ -0.86
HERC4-208ENST00000463478 TESPA1A2RU30 521 aaPredicted RBP9.69□□□□□ -0.86
HERC4-208ENST00000463478 FOXK1P85037 733 aa9.69□□□□□ -0.86
HERC4-208ENST00000463478 PLPP6Q8IY26 295 aa9.68□□□□□ -0.86
HERC4-208ENST00000463478 FAM163AQ96GL9 167 aaPredicted RBP9.67□□□□□ -0.86
HERC4-208ENST00000463478 DPYSL4O14531 572 aa9.66□□□□□ -0.86
HERC4-208ENST00000463478 KIF3CO14782 793 aa9.66□□□□□ -0.86
HERC4-208ENST00000463478 EMILIN3Q9NT22 766 aa9.66□□□□□ -0.86
HERC4-208ENST00000463478 SMYD5Q6GMV2 418 aa9.64□□□□□ -0.87
HERC4-208ENST00000463478 TMEM92Q6UXU6 159 aa9.64□□□□□ -0.87
HERC4-208ENST00000463478 SPDYE16A6NNV3 312 aaPredicted RBP9.59□□□□□ -0.87
HERC4-208ENST00000463478 MLLT3P42568 568 aaPredicted RBP9.59□□□□□ -0.87
HERC4-208ENST00000463478 PDIA6Q15084 440 aa9.59□□□□□ -0.87
HERC4-208ENST00000463478 UPF1Q92900 1129 aaKnown RBP eCLIP9.59□□□□□ -0.87
HERC4-208ENST00000463478 SNPHO15079 494 aa9.57□□□□□ -0.88
HERC4-208ENST00000463478 MAP3K9P80192 1104 aa9.57□□□□□ -0.88
HERC4-208ENST00000463478 ZC3H15Q8WU90 426 aaKnown RBP9.57□□□□□ -0.88
HERC4-208ENST00000463478 CDAN1Q8IWY9 1227 aa9.56□□□□□ -0.88
HERC4-208ENST00000463478 ST18O60284 1047 aa9.54□□□□□ -0.88
HERC4-208ENST00000463478 RBM26Q5T8P6 1007 aaKnown RBP9.53□□□□□ -0.88
HERC4-208ENST00000463478 OXER1Q8TDS5 423 aa9.52□□□□□ -0.89
HERC4-208ENST00000463478 GRXCR2A6NFK2 248 aa9.5□□□□□ -0.89
HERC4-208ENST00000463478 GPIHBP1Q8IV16 184 aa9.5□□□□□ -0.89
HERC4-208ENST00000463478 TBC1D12O60347 775 aa9.49□□□□□ -0.89
HERC4-208ENST00000463478 ZMYND10O75800 440 aa9.47□□□□□ -0.89
HERC4-208ENST00000463478 SLC24A3Q9HC58 644 aa9.47□□□□□ -0.89
HERC4-208ENST00000463478 ZNF316A6NFI3 1004 aaPredicted RBP9.46□□□□□ -0.9
HERC4-208ENST00000463478 EVI5O60447 810 aa9.46□□□□□ -0.9
HERC4-208ENST00000463478 HOXB3P14651 431 aaPredicted RBP9.46□□□□□ -0.9
HERC4-208ENST00000463478 PTCD2Q8WV60 388 aaKnown RBP9.45□□□□□ -0.9
HERC4-208ENST00000463478 DDX12PQ92771 950 aa9.45□□□□□ -0.9
HERC4-208ENST00000463478 DOK7Q18PE1 504 aa9.43□□□□□ -0.9
HERC4-208ENST00000463478 SLC34A2O95436 690 aa9.42□□□□□ -0.9
HERC4-208ENST00000463478 MMRN1Q13201 1228 aa9.42□□□□□ -0.9
HERC4-208ENST00000463478 BARGINQ6ZT62 677 aa9.42□□□□□ -0.9
HERC4-208ENST00000463478 NUTM2FA1L443 756 aa9.41□□□□□ -0.9
HERC4-208ENST00000463478 PTGER2P43116 358 aa9.41□□□□□ -0.9
HERC4-208ENST00000463478 OSBPP22059 807 aa9.4□□□□□ -0.9
HERC4-208ENST00000463478 KRI1Q8N9T8 703 aaKnown RBP9.4□□□□□ -0.9
HERC4-208ENST00000463478 MARVELD3Q96A59 401 aa9.4□□□□□ -0.9
HERC4-208ENST00000463478 ZNF710Q8N1W2 664 aa9.39□□□□□ -0.91
HERC4-208ENST00000463478 RIMBP2O15034 1052 aa9.38□□□□□ -0.91
HERC4-208ENST00000463478 EMP3P54852 163 aa9.38□□□□□ -0.91
HERC4-208ENST00000463478 PCDHGA4Q9Y5G9 962 aa9.38□□□□□ -0.91
HERC4-208ENST00000463478 BRPF1P55201 1214 aaPredicted RBP9.37□□□□□ -0.91
HERC4-208ENST00000463478 NEUROD2Q15784 382 aa9.37□□□□□ -0.91
HERC4-208ENST00000463478 GPR37O15354 613 aa9.36□□□□□ -0.91
HERC4-208ENST00000463478 HOXB1P14653 301 aaPredicted RBP9.36□□□□□ -0.91
HERC4-208ENST00000463478 ZSWIM6Q9HCJ5 1215 aa9.36□□□□□ -0.91
HERC4-208ENST00000463478 PRIM1P49642 420 aaKnown RBP9.35□□□□□ -0.91
HERC4-208ENST00000463478 SPNS2Q8IVW8 549 aa9.35□□□□□ -0.91
HERC4-208ENST00000463478 ANO8Q9HCE9 1232 aaPredicted RBP9.35□□□□□ -0.91
HERC4-208ENST00000463478 AK7Q96M32 723 aa9.34□□□□□ -0.91
HERC4-208ENST00000463478 FCHSD2O94868 740 aa9.32□□□□□ -0.92
HERC4-208ENST00000463478 PHF14O94880 888 aa9.32□□□□□ -0.92
HERC4-208ENST00000463478 RBM33Q96EV2 1170 aaKnown RBP9.31□□□□□ -0.92
HERC4-208ENST00000463478 EPAS1Q99814 870 aa9.31□□□□□ -0.92
HERC4-208ENST00000463478 GNPATO15228 680 aa9.3□□□□□ -0.92
HERC4-208ENST00000463478 MAP3K7O43318 606 aa9.3□□□□□ -0.92
HERC4-208ENST00000463478 EN1Q05925 392 aaPredicted RBP9.3□□□□□ -0.92
HERC4-208ENST00000463478 HIC1Q14526 733 aa9.3□□□□□ -0.92
HERC4-208ENST00000463478 TMEM132AQ24JP5 1023 aa9.3□□□□□ -0.92
HERC4-208ENST00000463478 GPR153Q6NV75 609 aa9.3□□□□□ -0.92
HERC4-208ENST00000463478 HS3ST6Q96QI5 342 aa9.3□□□□□ -0.92
HERC4-208ENST00000463478 PCDHGA10Q9Y5H3 936 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms