RNA–Protein interactions for RNA: ENST00000462030.5

HPS3-204, Transcript of HPS3, biogenesis of lysosomal organelles complex 2 subunit 1, humanhuman

TSL 2

Gene HPS3, Length 2,486 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3-204ENST00000462030 MRS2Q9HD23 443 aa25.39■■□□□ 1.65
HPS3-204ENST00000462030 NBPF8Q3BBV2 869 aa25.37■■□□□ 1.65
HPS3-204ENST00000462030 MIA2Q96PC5 1412 aa25.37■■□□□ 1.65
HPS3-204ENST00000462030 ARID3CA6NKF2 412 aa25.35■■□□□ 1.65
HPS3-204ENST00000462030 ZBED9Q6R2W3 1325 aa25.35■■□□□ 1.65
HPS3-204ENST00000462030 RPRD2Q5VT52 1461 aaKnown RBP25.33■■□□□ 1.65
HPS3-204ENST00000462030 TEX14Q8IWB6 1497 aa25.33■■□□□ 1.65
HPS3-204ENST00000462030 ANKRD30BQ9BXX2 1392 aa25.33■■□□□ 1.64
HPS3-204ENST00000462030 B4GALNT3Q6L9W6 998 aa25.32■■□□□ 1.64
HPS3-204ENST00000462030 ERICH6Q7L0X2 663 aa25.32■■□□□ 1.64
HPS3-204ENST00000462030 DNAJC5BQ9UF47 199 aa25.31■■□□□ 1.64
HPS3-204ENST00000462030 WDR62O43379 1518 aa25.3■■□□□ 1.64
HPS3-204ENST00000462030 POLR1AO95602 1720 aaPredicted RBP25.3■■□□□ 1.64
HPS3-204ENST00000462030 KIF7Q2M1P5 1343 aa25.3■■□□□ 1.64
HPS3-204ENST00000462030 IQGAP2Q13576 1575 aa25.3■■□□□ 1.64
HPS3-204ENST00000462030 TARBP1Q13395 1621 aaKnown RBP25.29■■□□□ 1.64
HPS3-204ENST00000462030 SPATA31E1Q6ZUB1 1445 aa25.28■■□□□ 1.64
HPS3-204ENST00000462030 DAPK1P53355 1430 aa25.27■■□□□ 1.64
HPS3-204ENST00000462030 PBRM1Q86U86 1689 aa25.27■■□□□ 1.64
HPS3-204ENST00000462030 ROCK1Q13464 1354 aa25.23■■□□□ 1.63
HPS3-204ENST00000462030 PDS5BQ9NTI5 1447 aa25.23■■□□□ 1.63
HPS3-204ENST00000462030 DNMT1P26358 1616 aaKnown RBP25.23■■□□□ 1.63
HPS3-204ENST00000462030 ABCC5O15440 1437 aa25.22■■□□□ 1.63
HPS3-204ENST00000462030 SLC4A1APQ9BWU0 796 aaKnown RBP25.2■■□□□ 1.62
HPS3-204ENST00000462030 ZNF644Q9H582 1327 aaPredicted RBP25.19■■□□□ 1.62
HPS3-204ENST00000462030 ADAMTS12P58397 1594 aa25.18■■□□□ 1.62
HPS3-204ENST00000462030 CNGB1Q14028 1251 aaPredicted RBP25.14■■□□□ 1.61
HPS3-204ENST00000462030 DHX29Q7Z478 1369 aaKnown RBP25.14■■□□□ 1.61
HPS3-204ENST00000462030 SMG6Q86US8 1419 aaKnown RBP25.12■■□□□ 1.61
HPS3-204ENST00000462030 BCORL1Q5H9F3 1711 aa25.12■■□□□ 1.61
HPS3-204ENST00000462030 PZPP20742 1482 aa25.11■■□□□ 1.61
HPS3-204ENST00000462030 MBD5Q9P267 1494 aa25.08■■□□□ 1.61
HPS3-204ENST00000462030 POLR3GLQ9BT43 218 aa25.07■■□□□ 1.6
HPS3-204ENST00000462030 NUP153P49790 1475 aaKnown RBP25.07■■□□□ 1.6
HPS3-204ENST00000462030 USP47Q96K76 1375 aa25.05■■□□□ 1.6
HPS3-204ENST00000462030 NUDCQ9Y266 331 aa25.05■■□□□ 1.6
HPS3-204ENST00000462030 KIAA0556O60303 1618 aa25.04■■□□□ 1.6
HPS3-204ENST00000462030 ZNF326Q5BKZ1 582 aaKnown RBP25.04■■□□□ 1.6
HPS3-204ENST00000462030 SENP3-EIF4A1A0A087X0R7 540 aa25.03■■□□□ 1.6
HPS3-204ENST00000462030 DISP1Q96F81 1524 aa25.02■■□□□ 1.6
HPS3-204ENST00000462030 RNF123Q5XPI4 1314 aa25.01■■□□□ 1.59
HPS3-204ENST00000462030 KIF14Q15058 1648 aa25.01■■□□□ 1.59
HPS3-204ENST00000462030 RAPGEF6Q8TEU7 1601 aa25.01■■□□□ 1.59
HPS3-204ENST00000462030 KDM5CP41229 1560 aa25■■□□□ 1.59
HPS3-204ENST00000462030 CAMSAP2Q08AD1 1489 aa25■■□□□ 1.59
HPS3-204ENST00000462030 NOP58Q9Y2X3 529 aaKnown RBP25■■□□□ 1.59
HPS3-204ENST00000462030 ADGBQ8N7X0 1667 aa24.99■■□□□ 1.59
HPS3-204ENST00000462030 KIAA1107Q9UPP5 1409 aa24.99■■□□□ 1.59
HPS3-204ENST00000462030 PAK3O75914 559 aaPredicted RBP24.97■■□□□ 1.59
HPS3-204ENST00000462030 CCDC136Q96JN2 1154 aa24.96■■□□□ 1.59
HPS3-204ENST00000462030 PRG4Q92954 1404 aaPredicted RBP24.95■■□□□ 1.59
HPS3-204ENST00000462030 MYT1LQ9UL68 1186 aa24.95■■□□□ 1.59
HPS3-204ENST00000462030 PKD2Q13563 968 aa24.93■■□□□ 1.58
HPS3-204ENST00000462030 KIAA0586Q9BVV6 1533 aa24.93■■□□□ 1.58
HPS3-204ENST00000462030 DEKP35659 375 aaKnown RBP24.93■■□□□ 1.58
HPS3-204ENST00000462030 PNISRQ8TF01 805 aaKnown RBP24.93■■□□□ 1.58
HPS3-204ENST00000462030 CFDP1Q9UEE9 299 aaPredicted RBP24.93■■□□□ 1.58
HPS3-204ENST00000462030 CROCC2H7BZ55 1655 aa24.92■■□□□ 1.58
HPS3-204ENST00000462030 ITSN2Q9NZM3 1697 aa24.92■■□□□ 1.58
HPS3-204ENST00000462030 TROQ12816 1431 aaPredicted RBP24.91■■□□□ 1.58
HPS3-204ENST00000462030 ZNF608Q9ULD9 1512 aaPredicted RBP24.9■■□□□ 1.58
HPS3-204ENST00000462030 ADGRL2O95490 1459 aa24.9■■□□□ 1.58
HPS3-204ENST00000462030 ARID4BQ4LE39 1312 aaPredicted RBP24.89■■□□□ 1.58
HPS3-204ENST00000462030 ZNF777Q9ULD5 760 aaPredicted RBP24.89■■□□□ 1.58
HPS3-204ENST00000462030 NBR1Q14596 966 aa24.89■■□□□ 1.57
HPS3-204ENST00000462030 GPATCH8Q9UKJ3 1502 aaKnown RBP24.89■■□□□ 1.57
HPS3-204ENST00000462030 TMC1Q8TDI8 760 aa24.88■■□□□ 1.57
HPS3-204ENST00000462030 RALGAPBQ86X10 1494 aa24.87■■□□□ 1.57
HPS3-204ENST00000462030 MRC2Q9UBG0 1479 aa24.85■■□□□ 1.57
HPS3-204ENST00000462030 UHRF1BP1Q6BDS2 1440 aa24.85■■□□□ 1.57
HPS3-204ENST00000462030 ROCK2O75116 1388 aaKnown RBP24.84■■□□□ 1.57
HPS3-204ENST00000462030 ANKRD30AQ9BXX3 1397 aa24.83■■□□□ 1.56
HPS3-204ENST00000462030 CARD11Q9BXL7 1154 aa24.83■■□□□ 1.56
HPS3-204ENST00000462030 ANKRD50Q9ULJ7 1429 aa24.82■■□□□ 1.56
HPS3-204ENST00000462030 KIF15Q9NS87 1388 aa24.82■■□□□ 1.56
HPS3-204ENST00000462030 ANP32AP39687 249 aaKnown RBP24.81■■□□□ 1.56
HPS3-204ENST00000462030 ADCY10Q96PN6 1610 aa24.81■■□□□ 1.56
HPS3-204ENST00000462030 LRPPRCP42704 1394 aaKnown RBP24.81■■□□□ 1.56
HPS3-204ENST00000462030 PLB1Q6P1J6 1458 aa24.81■■□□□ 1.56
HPS3-204ENST00000462030 IPO9Q96P70 1041 aaKnown RBP24.8■■□□□ 1.56
HPS3-204ENST00000462030 GRIN2AQ12879 1464 aa24.79■■□□□ 1.56
HPS3-204ENST00000462030 ST20-MTHFSA0A0A6YYL1 179 aa24.76■■□□□ 1.55
HPS3-204ENST00000462030 NUP155O75694 1391 aa24.76■■□□□ 1.55
HPS3-204ENST00000462030 IFT140Q96RY7 1462 aa24.76■■□□□ 1.55
HPS3-204ENST00000462030 ARHGEF12Q9NZN5 1544 aa24.76■■□□□ 1.55
HPS3-204ENST00000462030 MYBBP1AQ9BQG0 1328 aaKnown RBP24.76■■□□□ 1.55
HPS3-204ENST00000462030 BRD4O60885 1362 aaPredicted RBP24.75■■□□□ 1.55
HPS3-204ENST00000462030 E9PCH4 1651 aa24.75■■□□□ 1.55
HPS3-204ENST00000462030 KDM2AQ9Y2K7 1162 aa24.75■■□□□ 1.55
HPS3-204ENST00000462030 CDC42BPAQ5VT25 1732 aa24.73■■□□□ 1.55
HPS3-204ENST00000462030 RRP1P56182 461 aaKnown RBP24.73■■□□□ 1.55
HPS3-204ENST00000462030 ZBTB47Q9UFB7 747 aaPredicted RBP24.71■■□□□ 1.55
HPS3-204ENST00000462030 EXOC6Q8TAG9 804 aa24.71■■□□□ 1.55
HPS3-204ENST00000462030 RALBP1Q15311 655 aa24.7■■□□□ 1.54
HPS3-204ENST00000462030 CEP170Q5SW79 1584 aa24.69■■□□□ 1.54
HPS3-204ENST00000462030 C9orf84Q5VXU9 1444 aa24.69■■□□□ 1.54
HPS3-204ENST00000462030 EIF4G3O43432 1585 aaKnown RBP24.69■■□□□ 1.54
HPS3-204ENST00000462030 KTN1Q86UP2 1357 aaKnown RBP24.68■■□□□ 1.54
HPS3-204ENST00000462030 DCAF11Q8TEB1 546 aa24.68■■□□□ 1.54
HPS3-204ENST00000462030 SALL2Q9Y467 1007 aaPredicted RBP24.68■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms