RNA–Protein interactions for RNA: ENST00000461187.5

SMPD4-216, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 3

Gene SMPD4, Length 659 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-216ENST00000461187 YEATS2Q9ULM3 1422 aa24.21■■□□□ 1.47
SMPD4-216ENST00000461187 ILDR1Q86SU0 546 aaPredicted RBP24.21■■□□□ 1.47
SMPD4-216ENST00000461187 SCAPERQ9BY12 1400 aa24.2■■□□□ 1.46
SMPD4-216ENST00000461187 CDK11AQ9UQ88 783 aaPredicted RBP24.2■■□□□ 1.46
SMPD4-216ENST00000461187 POGZQ7Z3K3 1410 aa24.19■■□□□ 1.46
SMPD4-216ENST00000461187 TROQ12816 1431 aaPredicted RBP24.18■■□□□ 1.46
SMPD4-216ENST00000461187 CDC42BPBQ9Y5S2 1711 aa24.18■■□□□ 1.46
SMPD4-216ENST00000461187 FER1L4A9Z1Z3 1794 aa24.16■■□□□ 1.46
SMPD4-216ENST00000461187 PCF11O94913 1555 aaKnown RBP24.16■■□□□ 1.46
SMPD4-216ENST00000461187 EFCAB2Q5VUJ9 269 aa24.15■■□□□ 1.46
SMPD4-216ENST00000461187 CLIP1P30622 1438 aa24.13■■□□□ 1.45
SMPD4-216ENST00000461187 ARHGAP5Q13017 1502 aa24.12■■□□□ 1.45
SMPD4-216ENST00000461187 CASKIN1Q8WXD9 1431 aa24.1■■□□□ 1.45
SMPD4-216ENST00000461187 PREX2Q70Z35 1606 aa24.1■■□□□ 1.45
SMPD4-216ENST00000461187 CCDC18Q5T9S5 1454 aa24.09■■□□□ 1.45
SMPD4-216ENST00000461187 LMTK3Q96Q04 1460 aa24.09■■□□□ 1.45
SMPD4-216ENST00000461187 KDM5CP41229 1560 aa24.08■■□□□ 1.45
SMPD4-216ENST00000461187 ATP10AO60312 1499 aa24.08■■□□□ 1.45
SMPD4-216ENST00000461187 CDC42BPAQ5VT25 1732 aa24.08■■□□□ 1.45
SMPD4-216ENST00000461187 ZNF518AQ6AHZ1 1483 aa24.07■■□□□ 1.44
SMPD4-216ENST00000461187 C9orf84Q5VXU9 1444 aa24.05■■□□□ 1.44
SMPD4-216ENST00000461187 ITSN2Q9NZM3 1697 aa24.03■■□□□ 1.44
SMPD4-216ENST00000461187 ARHGEF12Q9NZN5 1544 aa24.03■■□□□ 1.44
SMPD4-216ENST00000461187 FYCO1Q9BQS8 1478 aa24.02■■□□□ 1.44
SMPD4-216ENST00000461187 MLECQ14165 292 aa24.02■■□□□ 1.44
SMPD4-216ENST00000461187 AFAP1Q8N556 730 aa24■■□□□ 1.43
SMPD4-216ENST00000461187 ABCC1P33527 1531 aa24■■□□□ 1.43
SMPD4-216ENST00000461187 DIP2CQ9Y2E4 1556 aa23.99■■□□□ 1.43
SMPD4-216ENST00000461187 ABCA6Q8N139 1617 aa23.99■■□□□ 1.43
SMPD4-216ENST00000461187 PLPPR3Q6T4P5 718 aa23.98■■□□□ 1.43
SMPD4-216ENST00000461187 SETD1BQ9UPS6 1966 aaKnown RBP23.97■■□□□ 1.43
SMPD4-216ENST00000461187 REREQ9P2R6 1566 aa23.96■■□□□ 1.43
SMPD4-216ENST00000461187 KIDINS220Q9ULH0 1771 aa23.95■■□□□ 1.42
SMPD4-216ENST00000461187 MLH3Q9UHC1 1453 aa23.94■■□□□ 1.42
SMPD4-216ENST00000461187 PREX1Q8TCU6 1659 aa23.94■■□□□ 1.42
SMPD4-216ENST00000461187 TRAPPC8Q9Y2L5 1435 aa23.93■■□□□ 1.42
SMPD4-216ENST00000461187 HSPA2P54652 639 aa23.91■■□□□ 1.42
SMPD4-216ENST00000461187 MYT1LQ9UL68 1186 aa23.9■■□□□ 1.42
SMPD4-216ENST00000461187 SAMD9LQ8IVG5 1584 aa23.9■■□□□ 1.42
SMPD4-216ENST00000461187 C3P01024 1663 aa23.86■■□□□ 1.41
SMPD4-216ENST00000461187 AGLP35573 1532 aa23.86■■□□□ 1.41
SMPD4-216ENST00000461187 GPATCH8Q9UKJ3 1502 aaKnown RBP23.85■■□□□ 1.41
SMPD4-216ENST00000461187 CEBPAP49715 358 aaPredicted RBP23.84■■□□□ 1.41
SMPD4-216ENST00000461187 FBXO41Q8TF61 875 aa23.84■■□□□ 1.41
SMPD4-216ENST00000461187 SYCP2Q9BX26 1530 aa23.83■■□□□ 1.41
SMPD4-216ENST00000461187 STRCQ7RTU9 1775 aa23.8■■□□□ 1.4
SMPD4-216ENST00000461187 SUPT6HQ7KZ85 1726 aaKnown RBP23.79■■□□□ 1.4
SMPD4-216ENST00000461187 ZNF777Q9ULD5 760 aaPredicted RBP23.79■■□□□ 1.4
SMPD4-216ENST00000461187 INO80Q9ULG1 1556 aaPredicted RBP23.75■■□□□ 1.39
SMPD4-216ENST00000461187 MTUS2Q5JR59 1369 aa23.75■■□□□ 1.39
SMPD4-216ENST00000461187 MROH2AA6NES4 1674 aa23.74■■□□□ 1.39
SMPD4-216ENST00000461187 HNRNPMP52272 730 aaKnown RBP eCLIP23.74■■□□□ 1.39
SMPD4-216ENST00000461187 CCNB3Q8WWL7 1395 aa23.74■■□□□ 1.39
SMPD4-216ENST00000461187 KIAA1107Q9UPP5 1409 aa23.74■■□□□ 1.39
SMPD4-216ENST00000461187 PLEKHH2Q8IVE3 1493 aa23.74■■□□□ 1.39
SMPD4-216ENST00000461187 ATP7AQ04656 1500 aa23.74■■□□□ 1.39
SMPD4-216ENST00000461187 TIAM1Q13009 1591 aa23.74■■□□□ 1.39
SMPD4-216ENST00000461187 UHRF1BP1Q6BDS2 1440 aa23.73■■□□□ 1.39
SMPD4-216ENST00000461187 CFDP1Q9UEE9 299 aaPredicted RBP23.72■■□□□ 1.39
SMPD4-216ENST00000461187 SPAG9O60271 1321 aaKnown RBP23.72■■□□□ 1.39
SMPD4-216ENST00000461187 EHBP1L1Q8N3D4 1523 aa23.72■■□□□ 1.39
SMPD4-216ENST00000461187 CEP162Q5TB80 1403 aa23.7■■□□□ 1.38
SMPD4-216ENST00000461187 ESF1Q9H501 851 aaKnown RBP23.69■■□□□ 1.38
SMPD4-216ENST00000461187 ADGBQ8N7X0 1667 aa23.69■■□□□ 1.38
SMPD4-216ENST00000461187 PLXNC1O60486 1568 aa23.69■■□□□ 1.38
SMPD4-216ENST00000461187 CNTLNQ9NXG0 1405 aa23.68■■□□□ 1.38
SMPD4-216ENST00000461187 CLTCQ00610 1675 aaKnown RBP23.67■■□□□ 1.38
SMPD4-216ENST00000461187 A2MP01023 1474 aa23.63■■□□□ 1.37
SMPD4-216ENST00000461187 CERKQ8TCT0 537 aa23.62■■□□□ 1.37
SMPD4-216ENST00000461187 ZNF644Q9H582 1327 aaPredicted RBP23.61■■□□□ 1.37
SMPD4-216ENST00000461187 MBD5Q9P267 1494 aa23.61■■□□□ 1.37
SMPD4-216ENST00000461187 DMRT2Q9Y5R5 561 aa23.59■■□□□ 1.37
SMPD4-216ENST00000461187 ZMYM3Q14202 1370 aa23.58■■□□□ 1.37
SMPD4-216ENST00000461187 NPATQ14207 1427 aa23.58■■□□□ 1.36
SMPD4-216ENST00000461187 NCOA2Q15596 1464 aa23.56■■□□□ 1.36
SMPD4-216ENST00000461187 ZNF142P52746 1687 aaPredicted RBP23.54■■□□□ 1.36
SMPD4-216ENST00000461187 RTEL1-TNFRSF6BF6WH68 1400 aa23.54■■□□□ 1.36
SMPD4-216ENST00000461187 PTPRTO14522 1441 aa23.54■■□□□ 1.36
SMPD4-216ENST00000461187 MYO3AQ8NEV4 1616 aa23.53■■□□□ 1.36
SMPD4-216ENST00000461187 NCOA1Q15788 1441 aa23.52■■□□□ 1.36
SMPD4-216ENST00000461187 CAMSAP1Q5T5Y3 1602 aa23.51■■□□□ 1.35
SMPD4-216ENST00000461187 CAMSAP2Q08AD1 1489 aa23.51■■□□□ 1.35
SMPD4-216ENST00000461187 GGT6Q6P531 493 aa23.51■■□□□ 1.35
SMPD4-216ENST00000461187 CCDC141Q6ZP82 1450 aa23.49■■□□□ 1.35
SMPD4-216ENST00000461187 PTPRKQ15262 1439 aa23.48■■□□□ 1.35
SMPD4-216ENST00000461187 PPP6R1Q9UPN7 881 aa23.47■■□□□ 1.35
SMPD4-216ENST00000461187 DHX29Q7Z478 1369 aaKnown RBP23.47■■□□□ 1.35
SMPD4-216ENST00000461187 VPS8Q8N3P4 1428 aa23.47■■□□□ 1.35
SMPD4-216ENST00000461187 LOC105371045A0A1W2PR82 267 aa23.46■■□□□ 1.35
SMPD4-216ENST00000461187 ARHGEF5Q12774 1597 aa23.46■■□□□ 1.35
SMPD4-216ENST00000461187 CEP170BQ9Y4F5 1589 aaPredicted RBP23.45■■□□□ 1.34
SMPD4-216ENST00000461187 LTBP4Q8N2S1 1624 aa23.44■■□□□ 1.34
SMPD4-216ENST00000461187 LRRC9Q6ZRR7 1453 aa23.44■■□□□ 1.34
SMPD4-216ENST00000461187 RSPH4AQ5TD94 716 aa23.42■■□□□ 1.34
SMPD4-216ENST00000461187 MAP3K1Q13233 1512 aa23.38■■□□□ 1.33
SMPD4-216ENST00000461187 PLA2R1Q13018 1463 aa23.38■■□□□ 1.33
SMPD4-216ENST00000461187 FAM135AQ9P2D6 1515 aa23.38■■□□□ 1.33
SMPD4-216ENST00000461187 DNMT1P26358 1616 aaKnown RBP23.37■■□□□ 1.33
SMPD4-216ENST00000461187 NCKAP5LQ9HCH0 1330 aa23.37■■□□□ 1.33
SMPD4-216ENST00000461187 KIF3BO15066 747 aa23.37■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms