RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 POGZQ7Z3K3 1410 aa37.19■■■■□ 3.54
PTPN4-207ENST00000460162 MAGI2Q86UL8 1455 aa37.19■■■■□ 3.54
PTPN4-207ENST00000460162 FYCO1Q9BQS8 1478 aa37.16■■■■□ 3.54
PTPN4-207ENST00000460162 MADDQ8WXG6 1647 aa37.15■■■■□ 3.54
PTPN4-207ENST00000460162 SCAPERQ9BY12 1400 aa37.15■■■■□ 3.54
PTPN4-207ENST00000460162 PTPRMP28827 1452 aa37.13■■■■□ 3.54
PTPN4-207ENST00000460162 ARHGAP5Q13017 1502 aa37.11■■■■□ 3.53
PTPN4-207ENST00000460162 EFCAB2Q5VUJ9 269 aa37.1■■■■□ 3.53
PTPN4-207ENST00000460162 YEATS2Q9ULM3 1422 aa37.1■■■■□ 3.53
PTPN4-207ENST00000460162 ARID4BQ4LE39 1312 aaPredicted RBP37.1■■■■□ 3.53
PTPN4-207ENST00000460162 PREX2Q70Z35 1606 aa37.07■■■■□ 3.53
PTPN4-207ENST00000460162 SIGLEC1Q9BZZ2 1709 aa37.06■■■■□ 3.52
PTPN4-207ENST00000460162 CDC42BPBQ9Y5S2 1711 aa37.05■■■■□ 3.52
PTPN4-207ENST00000460162 ZNF518AQ6AHZ1 1483 aa37.02■■■■□ 3.52
PTPN4-207ENST00000460162 RIMS1Q86UR5 1692 aaKnown RBP37.02■■■■□ 3.52
PTPN4-207ENST00000460162 KDM5CP41229 1560 aa37.01■■■■□ 3.52
PTPN4-207ENST00000460162 CDC42BPAQ5VT25 1732 aa36.95■■■■□ 3.51
PTPN4-207ENST00000460162 C9orf84Q5VXU9 1444 aa36.93■■■■□ 3.5
PTPN4-207ENST00000460162 ABCC1P33527 1531 aa36.93■■■■□ 3.5
PTPN4-207ENST00000460162 ATP10AO60312 1499 aa36.92■■■■□ 3.5
PTPN4-207ENST00000460162 ITSN2Q9NZM3 1697 aa36.9■■■■□ 3.5
PTPN4-207ENST00000460162 FER1L4A9Z1Z3 1794 aa36.89■■■■□ 3.5
PTPN4-207ENST00000460162 DIP2CQ9Y2E4 1556 aa36.83■■■■□ 3.49
PTPN4-207ENST00000460162 REREQ9P2R6 1566 aa36.83■■■■□ 3.49
PTPN4-207ENST00000460162 ARHGEF12Q9NZN5 1544 aa36.82■■■■□ 3.48
PTPN4-207ENST00000460162 MLH3Q9UHC1 1453 aa36.81■■■■□ 3.48
PTPN4-207ENST00000460162 ABCA6Q8N139 1617 aa36.8■■■■□ 3.48
PTPN4-207ENST00000460162 AFAP1Q8N556 730 aa36.79■■■■□ 3.48
PTPN4-207ENST00000460162 LMTK3Q96Q04 1460 aa36.78■■■■□ 3.48
PTPN4-207ENST00000460162 CEP162Q5TB80 1403 aa36.76■■■■□ 3.48
PTPN4-207ENST00000460162 TRAPPC8Q9Y2L5 1435 aa36.76■■■■□ 3.47
PTPN4-207ENST00000460162 SAMD9LQ8IVG5 1584 aa36.75■■■■□ 3.47
PTPN4-207ENST00000460162 GPATCH8Q9UKJ3 1502 aaKnown RBP36.74■■■■□ 3.47
PTPN4-207ENST00000460162 MLECQ14165 292 aa36.72■■■■□ 3.47
PTPN4-207ENST00000460162 EHBP1L1Q8N3D4 1523 aa36.69■■■■□ 3.46
PTPN4-207ENST00000460162 KIDINS220Q9ULH0 1771 aa36.69■■■■□ 3.46
PTPN4-207ENST00000460162 MTUS2Q5JR59 1369 aa36.68■■■■□ 3.46
PTPN4-207ENST00000460162 SYCP2Q9BX26 1530 aa36.68■■■■□ 3.46
PTPN4-207ENST00000460162 MYT1LQ9UL68 1186 aa36.67■■■■□ 3.46
PTPN4-207ENST00000460162 AGLP35573 1532 aa36.65■■■■□ 3.46
PTPN4-207ENST00000460162 PLEKHH2Q8IVE3 1493 aa36.62■■■■□ 3.45
PTPN4-207ENST00000460162 CCNB3Q8WWL7 1395 aa36.62■■■■□ 3.45
PTPN4-207ENST00000460162 TIAM1Q13009 1591 aa36.6■■■■□ 3.45
PTPN4-207ENST00000460162 KIAA1107Q9UPP5 1409 aa36.59■■■■□ 3.45
PTPN4-207ENST00000460162 ZNF777Q9ULD5 760 aaPredicted RBP36.58■■■■□ 3.45
PTPN4-207ENST00000460162 PREX1Q8TCU6 1659 aa36.56■■■■□ 3.44
PTPN4-207ENST00000460162 PLPPR3Q6T4P5 718 aa36.56■■■■□ 3.44
PTPN4-207ENST00000460162 INO80Q9ULG1 1556 aaPredicted RBP36.54■■■■□ 3.44
PTPN4-207ENST00000460162 CFDP1Q9UEE9 299 aaPredicted RBP36.54■■■■□ 3.44
PTPN4-207ENST00000460162 ILDR1Q86SU0 546 aaPredicted RBP36.53■■■■□ 3.44
PTPN4-207ENST00000460162 ATP7AQ04656 1500 aa36.52■■■■□ 3.44
PTPN4-207ENST00000460162 SPAG9O60271 1321 aaKnown RBP36.47■■■■□ 3.43
PTPN4-207ENST00000460162 SUPT6HQ7KZ85 1726 aaKnown RBP36.47■■■■□ 3.43
PTPN4-207ENST00000460162 C3P01024 1663 aa36.46■■■■□ 3.43
PTPN4-207ENST00000460162 HNRNPMP52272 730 aaKnown RBP eCLIP36.44■■■■□ 3.421e-9■■■■■ 28.9
PTPN4-207ENST00000460162 PLXNC1O60486 1568 aa36.44■■■■□ 3.42
PTPN4-207ENST00000460162 HSPA2P54652 639 aa36.41■■■■□ 3.42
PTPN4-207ENST00000460162 VPS8Q8N3P4 1428 aa36.4■■■■□ 3.42
PTPN4-207ENST00000460162 CNTLNQ9NXG0 1405 aa36.4■■■■□ 3.42
PTPN4-207ENST00000460162 NCOA2Q15596 1464 aa36.38■■■■□ 3.41
PTPN4-207ENST00000460162 CEBPAP49715 358 aaPredicted RBP36.38■■■■□ 3.41
PTPN4-207ENST00000460162 ADGBQ8N7X0 1667 aa36.38■■■■□ 3.41
PTPN4-207ENST00000460162 SETD1BQ9UPS6 1966 aaKnown RBP36.37■■■■□ 3.41
PTPN4-207ENST00000460162 MROH2AA6NES4 1674 aa36.37■■■■□ 3.41
PTPN4-207ENST00000460162 MBD5Q9P267 1494 aa36.36■■■■□ 3.41
PTPN4-207ENST00000460162 UHRF1BP1Q6BDS2 1440 aa36.34■■■■□ 3.41
PTPN4-207ENST00000460162 ESF1Q9H501 851 aaKnown RBP36.34■■■■□ 3.41
PTPN4-207ENST00000460162 A2MP01023 1474 aa36.34■■■■□ 3.41
PTPN4-207ENST00000460162 ZNF644Q9H582 1327 aaPredicted RBP36.3■■■■□ 3.4
PTPN4-207ENST00000460162 LOC105371045A0A1W2PR82 267 aa36.29■■■■□ 3.4
PTPN4-207ENST00000460162 CAMSAP2Q08AD1 1489 aa36.28■■■■□ 3.4
PTPN4-207ENST00000460162 RTEL1-TNFRSF6BF6WH68 1400 aa36.26■■■■□ 3.4
PTPN4-207ENST00000460162 LRRC9Q6ZRR7 1453 aa36.25■■■■□ 3.39
PTPN4-207ENST00000460162 CCDC141Q6ZP82 1450 aa36.24■■■■□ 3.39
PTPN4-207ENST00000460162 MAP3K1Q13233 1512 aa36.24■■■■□ 3.39
PTPN4-207ENST00000460162 CLTCQ00610 1675 aaKnown RBP36.22■■■■□ 3.39
PTPN4-207ENST00000460162 NPATQ14207 1427 aa36.19■■■■□ 3.38
PTPN4-207ENST00000460162 STRCQ7RTU9 1775 aa36.19■■■■□ 3.38
PTPN4-207ENST00000460162 ARHGEF5Q12774 1597 aa36.19■■■■□ 3.38
PTPN4-207ENST00000460162 FBXO41Q8TF61 875 aa36.17■■■■□ 3.38
PTPN4-207ENST00000460162 ZMYM3Q14202 1370 aa36.13■■■■□ 3.37
PTPN4-207ENST00000460162 RSPH4AQ5TD94 716 aa36.11■■■■□ 3.37
PTPN4-207ENST00000460162 DHX29Q7Z478 1369 aaKnown RBP36.08■■■■□ 3.37
PTPN4-207ENST00000460162 ZNF142P52746 1687 aaPredicted RBP36.07■■■■□ 3.36
PTPN4-207ENST00000460162 MYO3AQ8NEV4 1616 aa36.06■■■■□ 3.36
PTPN4-207ENST00000460162 PPP6R1Q9UPN7 881 aa36.06■■■■□ 3.36
PTPN4-207ENST00000460162 FAM135AQ9P2D6 1515 aa36.06■■■■□ 3.36
PTPN4-207ENST00000460162 GGT6Q6P531 493 aa36.05■■■■□ 3.36
PTPN4-207ENST00000460162 DMRT2Q9Y5R5 561 aa36.04■■■■□ 3.36
PTPN4-207ENST00000460162 MAST1Q9Y2H9 1570 aa36.02■■■■□ 3.36
PTPN4-207ENST00000460162 PTPRKQ15262 1439 aa36■■■■□ 3.35
PTPN4-207ENST00000460162 MYOM3Q5VTT5 1437 aa36■■■■□ 3.35
PTPN4-207ENST00000460162 MIA2Q96PC5 1412 aa36■■■■□ 3.35
PTPN4-207ENST00000460162 NCOA1Q15788 1441 aa36■■■■□ 3.35
PTPN4-207ENST00000460162 KANK4Q5T7N3 995 aaPredicted RBP35.99■■■■□ 3.35
PTPN4-207ENST00000460162 PTPRTO14522 1441 aa35.98■■■■□ 3.35
PTPN4-207ENST00000460162 KDM5DQ9BY66 1539 aa35.98■■■■□ 3.35
PTPN4-207ENST00000460162 CEP170BQ9Y4F5 1589 aaPredicted RBP35.96■■■■□ 3.35
PTPN4-207ENST00000460162 CAMSAP1Q5T5Y3 1602 aa35.95■■■■□ 3.35
PTPN4-207ENST00000460162 TSPY4P0CV99 314 aa35.93■■■■□ 3.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms