RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 ADAMTSL3P82987 1691 aa19.52■□□□□ 0.72
USP40-210ENST00000454354 BCORL1Q5H9F3 1711 aa19.52■□□□□ 0.72
USP40-210ENST00000454354 POGZQ7Z3K3 1410 aa19.51■□□□□ 0.71
USP40-210ENST00000454354 ARHGAP5Q13017 1502 aa19.51■□□□□ 0.71
USP40-210ENST00000454354 CEP162Q5TB80 1403 aa19.51■□□□□ 0.71
USP40-210ENST00000454354 MAGI2Q86UL8 1455 aa19.5■□□□□ 0.71
USP40-210ENST00000454354 ZFYVE16Q7Z3T8 1539 aa19.5■□□□□ 0.71
USP40-210ENST00000454354 SCAPERQ9BY12 1400 aa19.49■□□□□ 0.71
USP40-210ENST00000454354 EFCAB2Q5VUJ9 269 aa19.47■□□□□ 0.71
USP40-210ENST00000454354 SIGLEC1Q9BZZ2 1709 aa19.47■□□□□ 0.71
USP40-210ENST00000454354 KDM5CP41229 1560 aa19.46■□□□□ 0.71
USP40-210ENST00000454354 ITSN2Q9NZM3 1697 aa19.46■□□□□ 0.71
USP40-210ENST00000454354 ABCC1P33527 1531 aa19.45■□□□□ 0.7
USP40-210ENST00000454354 ZNF518AQ6AHZ1 1483 aa19.44■□□□□ 0.7
USP40-210ENST00000454354 MADDQ8WXG6 1647 aa19.43■□□□□ 0.7
USP40-210ENST00000454354 YEATS2Q9ULM3 1422 aa19.42■□□□□ 0.7
USP40-210ENST00000454354 HECW2Q9P2P5 1572 aa19.4■□□□□ 0.7
USP40-210ENST00000454354 EHBP1L1Q8N3D4 1523 aa19.39■□□□□ 0.69
USP40-210ENST00000454354 RIMS1Q86UR5 1692 aaKnown RBP19.37■□□□□ 0.69
USP40-210ENST00000454354 SAMD9LQ8IVG5 1584 aa19.37■□□□□ 0.69
USP40-210ENST00000454354 ARHGEF12Q9NZN5 1544 aa19.37■□□□□ 0.69
USP40-210ENST00000454354 GPATCH8Q9UKJ3 1502 aaKnown RBP19.36■□□□□ 0.69
USP40-210ENST00000454354 PTPRMP28827 1452 aa19.36■□□□□ 0.69
USP40-210ENST00000454354 REREQ9P2R6 1566 aa19.36■□□□□ 0.69
USP40-210ENST00000454354 DIP2CQ9Y2E4 1556 aa19.36■□□□□ 0.69
USP40-210ENST00000454354 ATP10AO60312 1499 aa19.35■□□□□ 0.69
USP40-210ENST00000454354 FER1L4A9Z1Z3 1794 aa19.35■□□□□ 0.69
USP40-210ENST00000454354 ABCA6Q8N139 1617 aa19.35■□□□□ 0.69
USP40-210ENST00000454354 C9orf84Q5VXU9 1444 aa19.34■□□□□ 0.69
USP40-210ENST00000454354 TIAM1Q13009 1591 aa19.34■□□□□ 0.69
USP40-210ENST00000454354 MLH3Q9UHC1 1453 aa19.34■□□□□ 0.69
USP40-210ENST00000454354 MTUS2Q5JR59 1369 aa19.33■□□□□ 0.69
USP40-210ENST00000454354 ARID4BQ4LE39 1312 aaPredicted RBP19.33■□□□□ 0.69
USP40-210ENST00000454354 KIDINS220Q9ULH0 1771 aa19.33■□□□□ 0.68
USP40-210ENST00000454354 TRAPPC8Q9Y2L5 1435 aa19.32■□□□□ 0.68
USP40-210ENST00000454354 SYCP2Q9BX26 1530 aa19.31■□□□□ 0.68
USP40-210ENST00000454354 VPS8Q8N3P4 1428 aa19.31■□□□□ 0.68
USP40-210ENST00000454354 SUPT6HQ7KZ85 1726 aaKnown RBP19.31■□□□□ 0.68
USP40-210ENST00000454354 LOC105371045A0A1W2PR82 267 aa19.3■□□□□ 0.68
USP40-210ENST00000454354 AFAP1Q8N556 730 aa19.3■□□□□ 0.68
USP40-210ENST00000454354 CCNB3Q8WWL7 1395 aa19.29■□□□□ 0.68
USP40-210ENST00000454354 PLEKHH2Q8IVE3 1493 aa19.28■□□□□ 0.68
USP40-210ENST00000454354 KIAA1107Q9UPP5 1409 aa19.26■□□□□ 0.67
USP40-210ENST00000454354 INO80Q9ULG1 1556 aaPredicted RBP19.26■□□□□ 0.67
USP40-210ENST00000454354 AGLP35573 1532 aa19.25■□□□□ 0.67
USP40-210ENST00000454354 MAP3K1Q13233 1512 aa19.23■□□□□ 0.67
USP40-210ENST00000454354 CFDP1Q9UEE9 299 aaPredicted RBP19.22■□□□□ 0.67
USP40-210ENST00000454354 NCOA2Q15596 1464 aa19.22■□□□□ 0.67
USP40-210ENST00000454354 ATP7AQ04656 1500 aa19.21■□□□□ 0.67
USP40-210ENST00000454354 ZNF777Q9ULD5 760 aaPredicted RBP19.2■□□□□ 0.66
USP40-210ENST00000454354 LRRC9Q6ZRR7 1453 aa19.19■□□□□ 0.66
USP40-210ENST00000454354 ADGBQ8N7X0 1667 aa19.18■□□□□ 0.66
USP40-210ENST00000454354 PLXNC1O60486 1568 aa19.18■□□□□ 0.66
USP40-210ENST00000454354 LMTK3Q96Q04 1460 aa19.17■□□□□ 0.66
USP40-210ENST00000454354 MBD5Q9P267 1494 aa19.17■□□□□ 0.66
USP40-210ENST00000454354 HNRNPMP52272 730 aaKnown RBP eCLIP19.16■□□□□ 0.66
USP40-210ENST00000454354 MLECQ14165 292 aa19.16■□□□□ 0.66
USP40-210ENST00000454354 MYT1LQ9UL68 1186 aa19.16■□□□□ 0.66
USP40-210ENST00000454354 PREX1Q8TCU6 1659 aa19.15■□□□□ 0.66
USP40-210ENST00000454354 SPAG9O60271 1321 aaKnown RBP19.15■□□□□ 0.66
USP40-210ENST00000454354 CAMSAP2Q08AD1 1489 aa19.14■□□□□ 0.65
USP40-210ENST00000454354 C3P01024 1663 aa19.14■□□□□ 0.65
USP40-210ENST00000454354 MROH2AA6NES4 1674 aa19.12■□□□□ 0.65
USP40-210ENST00000454354 SETD1BQ9UPS6 1966 aaKnown RBP19.12■□□□□ 0.65
USP40-210ENST00000454354 ARHGEF5Q12774 1597 aa19.11■□□□□ 0.65
USP40-210ENST00000454354 ZNF644Q9H582 1327 aaPredicted RBP19.11■□□□□ 0.65
USP40-210ENST00000454354 CCDC141Q6ZP82 1450 aa19.1■□□□□ 0.65
USP40-210ENST00000454354 A2MP01023 1474 aa19.09■□□□□ 0.65
USP40-210ENST00000454354 RTEL1-TNFRSF6BF6WH68 1400 aa19.09■□□□□ 0.65
USP40-210ENST00000454354 CNTLNQ9NXG0 1405 aa19.06■□□□□ 0.64
USP40-210ENST00000454354 KANK4Q5T7N3 995 aaPredicted RBP19.04■□□□□ 0.64
USP40-210ENST00000454354 MYOM3Q5VTT5 1437 aa19.04■□□□□ 0.64
USP40-210ENST00000454354 CLTCQ00610 1675 aaKnown RBP19.04■□□□□ 0.64
USP40-210ENST00000454354 MAST1Q9Y2H9 1570 aa19.03■□□□□ 0.64
USP40-210ENST00000454354 MIA2Q96PC5 1412 aa19.02■□□□□ 0.64
USP40-210ENST00000454354 RSPH4AQ5TD94 716 aa19.01■□□□□ 0.63
USP40-210ENST00000454354 PLPPR3Q6T4P5 718 aa19.01■□□□□ 0.63
USP40-210ENST00000454354 CEBPAP49715 358 aaPredicted RBP19■□□□□ 0.63
USP40-210ENST00000454354 CROCC2H7BZ55 1655 aa18.99■□□□□ 0.63
USP40-210ENST00000454354 DHX29Q7Z478 1369 aaKnown RBP18.98■□□□□ 0.63
USP40-210ENST00000454354 FAM135AQ9P2D6 1515 aa18.97■□□□□ 0.63
USP40-210ENST00000454354 ESF1Q9H501 851 aaKnown RBP18.97■□□□□ 0.63
USP40-210ENST00000454354 PTPN23Q9H3S7 1636 aa18.96■□□□□ 0.63
USP40-210ENST00000454354 UHRF1BP1Q6BDS2 1440 aa18.96■□□□□ 0.63
USP40-210ENST00000454354 STRCQ7RTU9 1775 aa18.96■□□□□ 0.63
USP40-210ENST00000454354 NPATQ14207 1427 aa18.95■□□□□ 0.62
USP40-210ENST00000454354 EIF2AK4Q9P2K8 1649 aaKnown RBP18.94■□□□□ 0.62
USP40-210ENST00000454354 HSPA2P54652 639 aa18.94■□□□□ 0.62
USP40-210ENST00000454354 ZNF142P52746 1687 aaPredicted RBP18.94■□□□□ 0.62
USP40-210ENST00000454354 APLP2Q06481 763 aa18.93■□□□□ 0.62
USP40-210ENST00000454354 RNF17Q9BXT8 1623 aaKnown RBP18.92■□□□□ 0.62
USP40-210ENST00000454354 PPP6R1Q9UPN7 881 aa18.92■□□□□ 0.62
USP40-210ENST00000454354 MYO3AQ8NEV4 1616 aa18.92■□□□□ 0.62
USP40-210ENST00000454354 ZMYM3Q14202 1370 aa18.92■□□□□ 0.62
USP40-210ENST00000454354 DNMT1P26358 1616 aaKnown RBP18.91■□□□□ 0.62
USP40-210ENST00000454354 TCOF1Q13428 1488 aaKnown RBP18.9■□□□□ 0.62
USP40-210ENST00000454354 SHANK2Q9UPX8 1470 aa18.9■□□□□ 0.62
USP40-210ENST00000454354 KDM5DQ9BY66 1539 aa18.9■□□□□ 0.62
USP40-210ENST00000454354 TSPY4P0CV99 314 aa18.9■□□□□ 0.62
USP40-210ENST00000454354 TSPY10P0CW01 314 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms