RNA–Protein interactions for RNA: ENST00000454240.1

SMARCC1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 3

Gene SMARCC1, Length 636 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-203ENST00000454240 EFCAB2Q5VUJ9 269 aa44■■■■■ 4.63
SMARCC1-203ENST00000454240 SUPT6HQ7KZ85 1726 aaKnown RBP43.99■■■■■ 4.63
SMARCC1-203ENST00000454240 KANK4Q5T7N3 995 aaPredicted RBP43.99■■■■■ 4.63
SMARCC1-203ENST00000454240 ARHGAP5Q13017 1502 aa43.99■■■■■ 4.63
SMARCC1-203ENST00000454240 GPATCH8Q9UKJ3 1502 aaKnown RBP43.97■■■■■ 4.63
SMARCC1-203ENST00000454240 CCNB3Q8WWL7 1395 aa43.92■■■■■ 4.62
SMARCC1-203ENST00000454240 NCOA2Q15596 1464 aa43.91■■■■■ 4.62
SMARCC1-203ENST00000454240 ADGRL1O94910 1474 aa43.88■■■■■ 4.61
SMARCC1-203ENST00000454240 DENND4BO75064 1496 aaPredicted RBP43.84■■■■■ 4.61
SMARCC1-203ENST00000454240 RAPGEF3O95398 923 aa43.84■■■■■ 4.61
SMARCC1-203ENST00000454240 RICTORQ6R327 1708 aa43.84■■■■■ 4.61
SMARCC1-203ENST00000454240 ITSN2Q9NZM3 1697 aa43.84■■■■■ 4.61
SMARCC1-203ENST00000454240 FRMPD1Q5SYB0 1578 aa43.83■■■■■ 4.61
SMARCC1-203ENST00000454240 SCAPERQ9BY12 1400 aa43.82■■■■■ 4.6
SMARCC1-203ENST00000454240 CFDP1Q9UEE9 299 aaPredicted RBP43.78■■■■■ 4.6
SMARCC1-203ENST00000454240 SAMD9LQ8IVG5 1584 aa43.75■■■■■ 4.59
SMARCC1-203ENST00000454240 ABCC1P33527 1531 aa43.73■■■■■ 4.59
SMARCC1-203ENST00000454240 ZNF777Q9ULD5 760 aaPredicted RBP43.71■■■■■ 4.59
SMARCC1-203ENST00000454240 POGZQ7Z3K3 1410 aa43.71■■■■■ 4.59
SMARCC1-203ENST00000454240 ARHGEF12Q9NZN5 1544 aa43.68■■■■■ 4.58
SMARCC1-203ENST00000454240 ZMYM4Q5VZL5 1548 aa43.64■■■■■ 4.58
SMARCC1-203ENST00000454240 ZNF518AQ6AHZ1 1483 aa43.62■■■■■ 4.57
SMARCC1-203ENST00000454240 PLEKHH2Q8IVE3 1493 aa43.62■■■■■ 4.57
SMARCC1-203ENST00000454240 KIAA1107Q9UPP5 1409 aa43.61■■■■■ 4.57
SMARCC1-203ENST00000454240 SYCP2Q9BX26 1530 aa43.58■■■■■ 4.57
SMARCC1-203ENST00000454240 MYOM3Q5VTT5 1437 aa43.58■■■■■ 4.57
SMARCC1-203ENST00000454240 ZNF644Q9H582 1327 aaPredicted RBP43.58■■■■■ 4.57
SMARCC1-203ENST00000454240 KDM5CP41229 1560 aa43.58■■■■■ 4.57
SMARCC1-203ENST00000454240 TRAPPC8Q9Y2L5 1435 aa43.57■■■■■ 4.57
SMARCC1-203ENST00000454240 AFAP1Q8N556 730 aa43.57■■■■■ 4.57
SMARCC1-203ENST00000454240 MAGI2Q86UL8 1455 aa43.54■■■■■ 4.56
SMARCC1-203ENST00000454240 HNRNPMP52272 730 aaKnown RBP eCLIP43.53■■■■■ 4.56
SMARCC1-203ENST00000454240 MIA2Q96PC5 1412 aa43.52■■■■■ 4.56
SMARCC1-203ENST00000454240 CAMSAP2Q08AD1 1489 aa43.51■■■■■ 4.56
SMARCC1-203ENST00000454240 MBD5Q9P267 1494 aa43.47■■■■■ 4.55
SMARCC1-203ENST00000454240 ARHGEF40Q8TER5 1519 aa43.47■■■■■ 4.55
SMARCC1-203ENST00000454240 ZFYVE16Q7Z3T8 1539 aa43.46■■■■■ 4.55
SMARCC1-203ENST00000454240 YEATS2Q9ULM3 1422 aa43.44■■■■■ 4.54
SMARCC1-203ENST00000454240 HECW2Q9P2P5 1572 aa43.44■■■■■ 4.54
SMARCC1-203ENST00000454240 MLH3Q9UHC1 1453 aa43.43■■■■■ 4.54
SMARCC1-203ENST00000454240 PPARGC1BQ86YN6 1023 aaKnown RBP43.36■■■■■ 4.53
SMARCC1-203ENST00000454240 FGD6Q6ZV73 1430 aa43.36■■■■■ 4.53
SMARCC1-203ENST00000454240 KIDINS220Q9ULH0 1771 aa43.36■■■■■ 4.53
SMARCC1-203ENST00000454240 PTPN23Q9H3S7 1636 aa43.35■■■■■ 4.53
SMARCC1-203ENST00000454240 ARHGEF5Q12774 1597 aa43.33■■■■■ 4.53
SMARCC1-203ENST00000454240 RSPH4AQ5TD94 716 aa43.33■■■■■ 4.53
SMARCC1-203ENST00000454240 SPAG9O60271 1321 aaKnown RBP43.31■■■■■ 4.52
SMARCC1-203ENST00000454240 MYT1LQ9UL68 1186 aa43.3■■■■■ 4.52
SMARCC1-203ENST00000454240 ATP10AO60312 1499 aa43.3■■■■■ 4.52
SMARCC1-203ENST00000454240 CCDC141Q6ZP82 1450 aa43.3■■■■■ 4.52
SMARCC1-203ENST00000454240 TCOF1Q13428 1488 aaKnown RBP43.28■■■■■ 4.52
SMARCC1-203ENST00000454240 ABCA6Q8N139 1617 aa43.28■■■■■ 4.52
SMARCC1-203ENST00000454240 INO80Q9ULG1 1556 aaPredicted RBP43.28■■■■■ 4.52
SMARCC1-203ENST00000454240 DIP2CQ9Y2E4 1556 aa43.28■■■■■ 4.52
SMARCC1-203ENST00000454240 ATP7AQ04656 1500 aa43.25■■■■■ 4.51
SMARCC1-203ENST00000454240 SIGLEC1Q9BZZ2 1709 aa43.22■■■■■ 4.51
SMARCC1-203ENST00000454240 C9orf84Q5VXU9 1444 aa43.22■■■■■ 4.51
SMARCC1-203ENST00000454240 RTEL1-TNFRSF6BF6WH68 1400 aa43.2■■■■■ 4.51
SMARCC1-203ENST00000454240 REREQ9P2R6 1566 aa43.18■■■■■ 4.5
SMARCC1-203ENST00000454240 KDM4FA0A1W2PPD8 638 aa43.16■■■■■ 4.5
SMARCC1-203ENST00000454240 TSPY4P0CV99 314 aa43.13■■■■■ 4.49
SMARCC1-203ENST00000454240 TSPY10P0CW01 314 aa43.13■■■■■ 4.49
SMARCC1-203ENST00000454240 ARID4BQ4LE39 1312 aaPredicted RBP43.12■■■■■ 4.49
SMARCC1-203ENST00000454240 MAST1Q9Y2H9 1570 aa43.11■■■■■ 4.49
SMARCC1-203ENST00000454240 DNMT1P26358 1616 aaKnown RBP43.1■■■■■ 4.49
SMARCC1-203ENST00000454240 BCORL1Q5H9F3 1711 aa43.09■■■■■ 4.49
SMARCC1-203ENST00000454240 ABCC5O15440 1437 aa43.08■■■■■ 4.49
SMARCC1-203ENST00000454240 CROCC2H7BZ55 1655 aa43.08■■■■■ 4.49
SMARCC1-203ENST00000454240 ADGBQ8N7X0 1667 aa43.07■■■■■ 4.49
SMARCC1-203ENST00000454240 DAPK1P53355 1430 aa43.05■■■■■ 4.48
SMARCC1-203ENST00000454240 FAM50AQ14320 339 aaKnown RBP43.04■■■■■ 4.48
SMARCC1-203ENST00000454240 AGLP35573 1532 aa43.02■■■■■ 4.48
SMARCC1-203ENST00000454240 ADAMTSL3P82987 1691 aa43.02■■■■■ 4.48
SMARCC1-203ENST00000454240 A2MP01023 1474 aa43■■■■■ 4.47
SMARCC1-203ENST00000454240 SHANK2Q9UPX8 1470 aa43■■■■■ 4.47
SMARCC1-203ENST00000454240 PLXNC1O60486 1568 aa42.99■■■■■ 4.47
SMARCC1-203ENST00000454240 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP42.94■■■■■ 4.46
SMARCC1-203ENST00000454240 RRBP1Q9P2E9 1410 aaKnown RBP42.92■■■■■ 4.46
SMARCC1-203ENST00000454240 DHX29Q7Z478 1369 aaKnown RBP42.91■■■■■ 4.46
SMARCC1-203ENST00000454240 MLECQ14165 292 aa42.88■■■■■ 4.45
SMARCC1-203ENST00000454240 MADDQ8WXG6 1647 aa42.87■■■■■ 4.45
SMARCC1-203ENST00000454240 FER1L4A9Z1Z3 1794 aa42.8■■■■■ 4.44
SMARCC1-203ENST00000454240 CHIC2Q9UKJ5 165 aa42.8■■■■■ 4.44
SMARCC1-203ENST00000454240 PTPRKQ15262 1439 aa42.79■■■■■ 4.44
SMARCC1-203ENST00000454240 ADGRL2O95490 1459 aa42.78■■■■■ 4.44
SMARCC1-203ENST00000454240 AEBP2Q6ZN18 517 aaPredicted RBP42.77■■■■■ 4.44
SMARCC1-203ENST00000454240 ANKRD30AQ9BXX3 1397 aa42.77■■■■■ 4.44
SMARCC1-203ENST00000454240 DUOX2Q9NRD8 1548 aa42.76■■■■■ 4.44
SMARCC1-203ENST00000454240 RIMS1Q86UR5 1692 aaKnown RBP42.76■■■■■ 4.44
SMARCC1-203ENST00000454240 NCOA1Q15788 1441 aa42.76■■■■■ 4.44
SMARCC1-203ENST00000454240 KIF15Q9NS87 1388 aa42.75■■■■■ 4.43
SMARCC1-203ENST00000454240 RRP7BPQ9NSQ0 103 aa42.74■■■■■ 4.43
SMARCC1-203ENST00000454240 PTPRMP28827 1452 aa42.7■■■■■ 4.43
SMARCC1-203ENST00000454240 EIF2AK4Q9P2K8 1649 aaKnown RBP42.69■■■■■ 4.42
SMARCC1-203ENST00000454240 KIF3BO15066 747 aa42.69■■■■■ 4.42
SMARCC1-203ENST00000454240 ITGAEP38570 1179 aa42.65■■■■■ 4.42
SMARCC1-203ENST00000454240 GGT6Q6P531 493 aa42.65■■■■■ 4.42
SMARCC1-203ENST00000454240 ROCK1Q13464 1354 aa42.63■■■■■ 4.41
SMARCC1-203ENST00000454240 ERBINQ96RT1 1412 aa42.63■■■■■ 4.41
SMARCC1-203ENST00000454240 PPP6R1Q9UPN7 881 aa42.61■■■■■ 4.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms