RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 TMEM92Q6UXU6 159 aa10.81□□□□□ -0.68
USP40-209ENST00000452724 HOXB3P14651 431 aaPredicted RBP10.79□□□□□ -0.68
USP40-209ENST00000452724 TMC2Q8TDI7 906 aa10.79□□□□□ -0.68
USP40-209ENST00000452724 PPP1R37O75864 691 aa10.78□□□□□ -0.68
USP40-209ENST00000452724 EMP3P54852 163 aa10.77□□□□□ -0.69
USP40-209ENST00000452724 NKX1-1Q15270 411 aaPredicted RBP10.77□□□□□ -0.69
USP40-209ENST00000452724 MARVELD3Q96A59 401 aa10.77□□□□□ -0.69
USP40-209ENST00000452724 ZSWIM6Q9HCJ5 1215 aa10.76□□□□□ -0.69
USP40-209ENST00000452724 C2orf72A6NCS6 295 aa10.74□□□□□ -0.69
USP40-209ENST00000452724 HOXB1P14653 301 aaPredicted RBP10.73□□□□□ -0.69
USP40-209ENST00000452724 KIF3CO14782 793 aa10.72□□□□□ -0.69
USP40-209ENST00000452724 CDAN1Q8IWY9 1227 aa10.72□□□□□ -0.69
USP40-209ENST00000452724 FAM205CA6NFA0 338 aa10.68□□□□□ -0.7
USP40-209ENST00000452724 GTPBP6O43824 516 aaPredicted RBP10.67□□□□□ -0.7
USP40-209ENST00000452724 PLSCR2Q9NRY7 297 aa10.67□□□□□ -0.7
USP40-209ENST00000452724 ERBB3P21860 1342 aa10.65□□□□□ -0.7
USP40-209ENST00000452724 HS3ST6Q96QI5 342 aa10.65□□□□□ -0.7
USP40-209ENST00000452724 GPHNQ9NQX3 736 aaPredicted RBP10.65□□□□□ -0.7
USP40-209ENST00000452724 GPR153Q6NV75 609 aa10.63□□□□□ -0.71
USP40-209ENST00000452724 BBXQ8WY36 941 aaPredicted RBP10.63□□□□□ -0.71
USP40-209ENST00000452724 SLC34A2O95436 690 aa10.62□□□□□ -0.71
USP40-209ENST00000452724 FOXK1P85037 733 aa10.62□□□□□ -0.71
USP40-209ENST00000452724 ARSIQ5FYB1 569 aa10.61□□□□□ -0.71
USP40-209ENST00000452724 PLPP6Q8IY26 295 aa10.59□□□□□ -0.71
USP40-209ENST00000452724 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.59□□□□□ -0.71
USP40-209ENST00000452724 PDE4AP27815 886 aa10.58□□□□□ -0.72
USP40-209ENST00000452724 VARS2Q5ST30 1063 aaKnown RBP10.57□□□□□ -0.72
USP40-209ENST00000452724 PCDHGA4Q9Y5G9 962 aa10.57□□□□□ -0.72
USP40-209ENST00000452724 DSG2Q14126 1118 aa10.56□□□□□ -0.72
USP40-209ENST00000452724 POTEB3A0JP26 581 aa10.55□□□□□ -0.72
USP40-209ENST00000452724 TBC1D12O60347 775 aa10.55□□□□□ -0.72
USP40-209ENST00000452724 POTEBQ6S5H4 581 aa10.55□□□□□ -0.72
USP40-209ENST00000452724 CRISPLD2Q9H0B8 497 aa10.55□□□□□ -0.72
USP40-209ENST00000452724 ZNF316A6NFI3 1004 aaPredicted RBP10.53□□□□□ -0.72
USP40-209ENST00000452724 PTCD2Q8WV60 388 aaKnown RBP10.53□□□□□ -0.72
USP40-209ENST00000452724 KHSRPQ92945 711 aaKnown RBP eCLIP10.53□□□□□ -0.72
USP40-209ENST00000452724 NUDT7P0C024 238 aa10.52□□□□□ -0.73
USP40-209ENST00000452724 PPP1R15BQ5SWA1 713 aa10.52□□□□□ -0.73
USP40-209ENST00000452724 SPRYD3Q8NCJ5 442 aa10.52□□□□□ -0.73
USP40-209ENST00000452724 ZNF687Q8N1G0 1237 aa10.5□□□□□ -0.73
USP40-209ENST00000452724 NCKAP5LQ9HCH0 1330 aa10.5□□□□□ -0.73
USP40-209ENST00000452724 DDX27Q96GQ7 796 aaKnown RBP10.49□□□□□ -0.73
USP40-209ENST00000452724 LARP6Q9BRS8 491 aaKnown RBP10.49□□□□□ -0.73
USP40-209ENST00000452724 PSDA5PKW4 1024 aaPredicted RBP10.48□□□□□ -0.73
USP40-209ENST00000452724 KRTAP3-3Q9BYR6 98 aa10.46□□□□□ -0.73
USP40-209ENST00000452724 KRTAP3-2Q9BYR7 98 aa10.46□□□□□ -0.73
USP40-209ENST00000452724 LHX6Q9UPM6 363 aa10.45□□□□□ -0.74
USP40-209ENST00000452724 MFSD10Q14728 455 aa10.44□□□□□ -0.74
USP40-209ENST00000452724 SPNS2Q8IVW8 549 aa10.44□□□□□ -0.74
USP40-209ENST00000452724 OXER1Q8TDS5 423 aa10.43□□□□□ -0.74
USP40-209ENST00000452724 UPF1Q92900 1129 aaKnown RBP eCLIP10.43□□□□□ -0.74
USP40-209ENST00000452724 CFAP44Q96MT7 982 aa10.43□□□□□ -0.74
USP40-209ENST00000452724 PAXIP1Q6ZW49 1069 aaPredicted RBP10.42□□□□□ -0.74
USP40-209ENST00000452724 PBX2P40425 430 aa10.41□□□□□ -0.74
USP40-209ENST00000452724 CADPS2Q86UW7 1296 aa10.41□□□□□ -0.74
USP40-209ENST00000452724 KDM4FA0A1W2PPD8 638 aa10.39□□□□□ -0.75
USP40-209ENST00000452724 PPP4R3BQ5MIZ7 849 aa10.38□□□□□ -0.75
USP40-209ENST00000452724 MMRN1Q13201 1228 aa10.37□□□□□ -0.75
USP40-209ENST00000452724 MAP3K9P80192 1104 aa10.36□□□□□ -0.75
USP40-209ENST00000452724 PTGER2P43116 358 aa10.34□□□□□ -0.75
USP40-209ENST00000452724 KCNH8Q96L42 1107 aa10.34□□□□□ -0.75
USP40-209ENST00000452724 EVI5O60447 810 aa10.33□□□□□ -0.76
USP40-209ENST00000452724 LSM11P83369 360 aaKnown RBP eCLIP10.33□□□□□ -0.76
USP40-209ENST00000452724 ANKRD13DQ6ZTN6 518 aa10.33□□□□□ -0.76
USP40-209ENST00000452724 ARHGAP33O14559 1287 aa10.31□□□□□ -0.76
USP40-209ENST00000452724 ZNF454Q8N9F8 522 aa10.3□□□□□ -0.76
USP40-209ENST00000452724 EMILIN3Q9NT22 766 aa10.3□□□□□ -0.76
USP40-209ENST00000452724 WDR70Q9NW82 654 aa10.3□□□□□ -0.76
USP40-209ENST00000452724 CAMK2BQ13554 666 aa10.29□□□□□ -0.76
USP40-209ENST00000452724 ANO8Q9HCE9 1232 aaPredicted RBP10.29□□□□□ -0.76
USP40-209ENST00000452724 AXIN2Q9Y2T1 843 aa10.29□□□□□ -0.76
USP40-209ENST00000452724 JPH4Q96JJ6 628 aa10.26□□□□□ -0.77
USP40-209ENST00000452724 MYT1LQ9UL68 1186 aa10.26□□□□□ -0.77
USP40-209ENST00000452724 FOSBP53539 338 aa10.25□□□□□ -0.77
USP40-209ENST00000452724 PLCB2Q00722 1185 aa10.25□□□□□ -0.77
USP40-209ENST00000452724 POTEEQ6S8J3 1075 aa10.25□□□□□ -0.77
USP40-209ENST00000452724 RNF166Q96A37 237 aaPredicted RBP10.24□□□□□ -0.77
USP40-209ENST00000452724 KCNK17Q96T54 332 aa10.24□□□□□ -0.77
USP40-209ENST00000452724 SLC24A1O60721 1099 aa10.23□□□□□ -0.77
USP40-209ENST00000452724 BCL2L12Q9HB09 334 aa10.23□□□□□ -0.77
USP40-209ENST00000452724 TK2O00142 265 aa10.22□□□□□ -0.77
USP40-209ENST00000452724 DPYSL4O14531 572 aa10.22□□□□□ -0.77
USP40-209ENST00000452724 PTPREP23469 700 aa10.22□□□□□ -0.77
USP40-209ENST00000452724 PSEN2P49810 448 aa10.22□□□□□ -0.77
USP40-209ENST00000452724 E2F4Q16254 413 aa10.22□□□□□ -0.77
USP40-209ENST00000452724 ZDHHC16Q969W1 377 aa10.22□□□□□ -0.77
USP40-209ENST00000452724 ADGRD1Q6QNK2 874 aa10.21□□□□□ -0.77
USP40-209ENST00000452724 FBXW7Q969H0 707 aa10.19□□□□□ -0.78
USP40-209ENST00000452724 STAC3Q96MF2 364 aa10.19□□□□□ -0.78
USP40-209ENST00000452724 PHF14O94880 888 aa10.18□□□□□ -0.78
USP40-209ENST00000452724 DMRTA1Q5VZB9 504 aa10.18□□□□□ -0.78
USP40-209ENST00000452724 SPDYE16A6NNV3 312 aaPredicted RBP10.17□□□□□ -0.78
USP40-209ENST00000452724 TYW1BQ6NUM6 668 aa10.17□□□□□ -0.78
USP40-209ENST00000452724 EPAS1Q99814 870 aa10.16□□□□□ -0.78
USP40-209ENST00000452724 ADAM33Q9BZ11 813 aa10.16□□□□□ -0.78
USP40-209ENST00000452724 PCDHGA10Q9Y5H3 936 aa10.16□□□□□ -0.78
USP40-209ENST00000452724 PDIA6Q15084 440 aa10.14□□□□□ -0.79
USP40-209ENST00000452724 TSHZ2Q9NRE2 1034 aa10.14□□□□□ -0.79
USP40-209ENST00000452724 SLC4A5Q9BY07 1137 aa10.13□□□□□ -0.79
USP40-209ENST00000452724 ARIH1Q9Y4X5 557 aaPredicted RBP10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms