RNA–Protein interactions for RNA: ENST00000452447.1

CHD3-206, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,573 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-206ENST00000452447 ARHGAP5Q13017 1502 aa20.78■□□□□ 0.92
CHD3-206ENST00000452447 MAGI2Q86UL8 1455 aa20.77■□□□□ 0.92
CHD3-206ENST00000452447 POGZQ7Z3K3 1410 aa20.77■□□□□ 0.91
CHD3-206ENST00000452447 ADAMTSL3P82987 1691 aa20.76■□□□□ 0.91
CHD3-206ENST00000452447 ZFYVE16Q7Z3T8 1539 aa20.76■□□□□ 0.91
CHD3-206ENST00000452447 BCORL1Q5H9F3 1711 aa20.75■□□□□ 0.91
CHD3-206ENST00000452447 YEATS2Q9ULM3 1422 aa20.73■□□□□ 0.91
CHD3-206ENST00000452447 CDC42BPBQ9Y5S2 1711 aa20.72■□□□□ 0.91
CHD3-206ENST00000452447 HECW2Q9P2P5 1572 aa20.71■□□□□ 0.91
CHD3-206ENST00000452447 PTPRMP28827 1452 aa20.71■□□□□ 0.91
CHD3-206ENST00000452447 ZNF518AQ6AHZ1 1483 aa20.71■□□□□ 0.91
CHD3-206ENST00000452447 PREX2Q70Z35 1606 aa20.69■□□□□ 0.9
CHD3-206ENST00000452447 MADDQ8WXG6 1647 aa20.69■□□□□ 0.9
CHD3-206ENST00000452447 MYT1LQ9UL68 1186 aa20.69■□□□□ 0.9
CHD3-206ENST00000452447 AFAP1Q8N556 730 aa20.68■□□□□ 0.9
CHD3-206ENST00000452447 CEP162Q5TB80 1403 aa20.68■□□□□ 0.9
CHD3-206ENST00000452447 CDC42BPAQ5VT25 1732 aa20.66■□□□□ 0.9
CHD3-206ENST00000452447 ATP10AO60312 1499 aa20.66■□□□□ 0.9
CHD3-206ENST00000452447 MLECQ14165 292 aa20.64■□□□□ 0.9
CHD3-206ENST00000452447 RIMS1Q86UR5 1692 aaKnown RBP20.64■□□□□ 0.89
CHD3-206ENST00000452447 MTUS2Q5JR59 1369 aa20.64■□□□□ 0.89
CHD3-206ENST00000452447 SIGLEC1Q9BZZ2 1709 aa20.63■□□□□ 0.89
CHD3-206ENST00000452447 KDM5CP41229 1560 aa20.63■□□□□ 0.89
CHD3-206ENST00000452447 C9orf84Q5VXU9 1444 aa20.63■□□□□ 0.89
CHD3-206ENST00000452447 ZNF777Q9ULD5 760 aaPredicted RBP20.63■□□□□ 0.89
CHD3-206ENST00000452447 ABCC1P33527 1531 aa20.62■□□□□ 0.89
CHD3-206ENST00000452447 GPATCH8Q9UKJ3 1502 aaKnown RBP20.6■□□□□ 0.89
CHD3-206ENST00000452447 LOC105371045A0A1W2PR82 267 aa20.59■□□□□ 0.89
CHD3-206ENST00000452447 ITSN2Q9NZM3 1697 aa20.59■□□□□ 0.89
CHD3-206ENST00000452447 PLPPR3Q6T4P5 718 aa20.59■□□□□ 0.89
CHD3-206ENST00000452447 TRAPPC8Q9Y2L5 1435 aa20.58■□□□□ 0.89
CHD3-206ENST00000452447 CCNB3Q8WWL7 1395 aa20.58■□□□□ 0.89
CHD3-206ENST00000452447 ARHGEF12Q9NZN5 1544 aa20.58■□□□□ 0.89
CHD3-206ENST00000452447 MLH3Q9UHC1 1453 aa20.57■□□□□ 0.88
CHD3-206ENST00000452447 CFDP1Q9UEE9 299 aaPredicted RBP20.57■□□□□ 0.88
CHD3-206ENST00000452447 FER1L4A9Z1Z3 1794 aa20.57■□□□□ 0.88
CHD3-206ENST00000452447 DIP2CQ9Y2E4 1556 aa20.54■□□□□ 0.88
CHD3-206ENST00000452447 SAMD9LQ8IVG5 1584 aa20.54■□□□□ 0.88
CHD3-206ENST00000452447 EHBP1L1Q8N3D4 1523 aa20.53■□□□□ 0.88
CHD3-206ENST00000452447 ABCA6Q8N139 1617 aa20.52■□□□□ 0.88
CHD3-206ENST00000452447 HNRNPMP52272 730 aaKnown RBP eCLIP20.52■□□□□ 0.88
CHD3-206ENST00000452447 SYCP2Q9BX26 1530 aa20.51■□□□□ 0.87
CHD3-206ENST00000452447 PLEKHH2Q8IVE3 1493 aa20.5■□□□□ 0.87
CHD3-206ENST00000452447 REREQ9P2R6 1566 aa20.5■□□□□ 0.87
CHD3-206ENST00000452447 KIDINS220Q9ULH0 1771 aa20.5■□□□□ 0.87
CHD3-206ENST00000452447 KIAA1107Q9UPP5 1409 aa20.49■□□□□ 0.87
CHD3-206ENST00000452447 SPAG9O60271 1321 aaKnown RBP20.49■□□□□ 0.87
CHD3-206ENST00000452447 LMTK3Q96Q04 1460 aa20.47■□□□□ 0.87
CHD3-206ENST00000452447 TIAM1Q13009 1591 aa20.47■□□□□ 0.87
CHD3-206ENST00000452447 VPS8Q8N3P4 1428 aa20.45■□□□□ 0.86
CHD3-206ENST00000452447 ESF1Q9H501 851 aaKnown RBP20.45■□□□□ 0.86
CHD3-206ENST00000452447 AGLP35573 1532 aa20.45■□□□□ 0.86
CHD3-206ENST00000452447 SUPT6HQ7KZ85 1726 aaKnown RBP20.44■□□□□ 0.86
CHD3-206ENST00000452447 CEBPAP49715 358 aaPredicted RBP20.43■□□□□ 0.86
CHD3-206ENST00000452447 ZNF644Q9H582 1327 aaPredicted RBP20.42■□□□□ 0.86
CHD3-206ENST00000452447 ATP7AQ04656 1500 aa20.41■□□□□ 0.86
CHD3-206ENST00000452447 NCOA2Q15596 1464 aa20.41■□□□□ 0.86
CHD3-206ENST00000452447 SETD1BQ9UPS6 1966 aaKnown RBP20.41■□□□□ 0.86
CHD3-206ENST00000452447 HSPA2P54652 639 aa20.4■□□□□ 0.86
CHD3-206ENST00000452447 INO80Q9ULG1 1556 aaPredicted RBP20.37■□□□□ 0.85
CHD3-206ENST00000452447 LRRC9Q6ZRR7 1453 aa20.36■□□□□ 0.85
CHD3-206ENST00000452447 MBD5Q9P267 1494 aa20.36■□□□□ 0.85
CHD3-206ENST00000452447 PREX1Q8TCU6 1659 aa20.35■□□□□ 0.85
CHD3-206ENST00000452447 ILDR1Q86SU0 546 aaPredicted RBP20.35■□□□□ 0.85
CHD3-206ENST00000452447 A2MP01023 1474 aa20.35■□□□□ 0.85
CHD3-206ENST00000452447 CNTLNQ9NXG0 1405 aa20.34■□□□□ 0.85
CHD3-206ENST00000452447 C3P01024 1663 aa20.33■□□□□ 0.85
CHD3-206ENST00000452447 RSPH4AQ5TD94 716 aa20.33■□□□□ 0.84
CHD3-206ENST00000452447 CAMSAP2Q08AD1 1489 aa20.32■□□□□ 0.84
CHD3-206ENST00000452447 MAP3K1Q13233 1512 aa20.32■□□□□ 0.84
CHD3-206ENST00000452447 ADGBQ8N7X0 1667 aa20.32■□□□□ 0.84
CHD3-206ENST00000452447 RTEL1-TNFRSF6BF6WH68 1400 aa20.31■□□□□ 0.84
CHD3-206ENST00000452447 PLXNC1O60486 1568 aa20.31■□□□□ 0.84
CHD3-206ENST00000452447 APLP2Q06481 763 aa20.3■□□□□ 0.84
CHD3-206ENST00000452447 UHRF1BP1Q6BDS2 1440 aa20.3■□□□□ 0.84
CHD3-206ENST00000452447 KANK4Q5T7N3 995 aaPredicted RBP20.29■□□□□ 0.84
CHD3-206ENST00000452447 GGT6Q6P531 493 aa20.29■□□□□ 0.84
CHD3-206ENST00000452447 CCDC141Q6ZP82 1450 aa20.29■□□□□ 0.84
CHD3-206ENST00000452447 TSPY4P0CV99 314 aa20.26■□□□□ 0.83
CHD3-206ENST00000452447 TSPY10P0CW01 314 aa20.26■□□□□ 0.83
CHD3-206ENST00000452447 MROH2AA6NES4 1674 aa20.26■□□□□ 0.83
CHD3-206ENST00000452447 ZMYM3Q14202 1370 aa20.25■□□□□ 0.83
CHD3-206ENST00000452447 DHX29Q7Z478 1369 aaKnown RBP20.24■□□□□ 0.83
CHD3-206ENST00000452447 CLTCQ00610 1675 aaKnown RBP20.24■□□□□ 0.83
CHD3-206ENST00000452447 ARHGEF5Q12774 1597 aa20.23■□□□□ 0.83
CHD3-206ENST00000452447 PPP6R1Q9UPN7 881 aa20.23■□□□□ 0.83
CHD3-206ENST00000452447 MYOM3Q5VTT5 1437 aa20.22■□□□□ 0.83
CHD3-206ENST00000452447 NPATQ14207 1427 aa20.2■□□□□ 0.82
CHD3-206ENST00000452447 MIA2Q96PC5 1412 aa20.2■□□□□ 0.82
CHD3-206ENST00000452447 KIF3BO15066 747 aa20.2■□□□□ 0.82
CHD3-206ENST00000452447 DMRT2Q9Y5R5 561 aa20.2■□□□□ 0.82
CHD3-206ENST00000452447 FBXO41Q8TF61 875 aa20.17■□□□□ 0.82
CHD3-206ENST00000452447 STRCQ7RTU9 1775 aa20.16■□□□□ 0.82
CHD3-206ENST00000452447 PTPRKQ15262 1439 aa20.13■□□□□ 0.81
CHD3-206ENST00000452447 MAST1Q9Y2H9 1570 aa20.12■□□□□ 0.81
CHD3-206ENST00000452447 WASHC2CQ9Y4E1 1318 aa20.11■□□□□ 0.81
CHD3-206ENST00000452447 KDM5DQ9BY66 1539 aa20.09■□□□□ 0.81
CHD3-206ENST00000452447 FAM135AQ9P2D6 1515 aa20.09■□□□□ 0.81
CHD3-206ENST00000452447 MYO3AQ8NEV4 1616 aa20.08■□□□□ 0.81
CHD3-206ENST00000452447 PTPN23Q9H3S7 1636 aa20.08■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms