RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 APLP2Q06481 763 aa25.81■■□□□ 1.72
SF3A1-204ENST00000447376 SCAPERQ9BY12 1400 aa25.8■■□□□ 1.72
SF3A1-204ENST00000447376 CCNB3Q8WWL7 1395 aa25.8■■□□□ 1.72
SF3A1-204ENST00000447376 TIAM1Q13009 1591 aa25.78■■□□□ 1.72
SF3A1-204ENST00000447376 CDC42BPBQ9Y5S2 1711 aa25.77■■□□□ 1.72
SF3A1-204ENST00000447376 RICTORQ6R327 1708 aa25.76■■□□□ 1.71
SF3A1-204ENST00000447376 CDC42BPAQ5VT25 1732 aa25.75■■□□□ 1.71
SF3A1-204ENST00000447376 FRMPD1Q5SYB0 1578 aa25.75■■□□□ 1.71
SF3A1-204ENST00000447376 POGZQ7Z3K3 1410 aa25.74■■□□□ 1.71
SF3A1-204ENST00000447376 SUPT6HQ7KZ85 1726 aaKnown RBP25.72■■□□□ 1.71
SF3A1-204ENST00000447376 CFDP1Q9UEE9 299 aaPredicted RBP25.72■■□□□ 1.71
SF3A1-204ENST00000447376 ZNF777Q9ULD5 760 aaPredicted RBP25.72■■□□□ 1.71
SF3A1-204ENST00000447376 MAP3K1Q13233 1512 aa25.72■■□□□ 1.71
SF3A1-204ENST00000447376 ZNF518AQ6AHZ1 1483 aa25.72■■□□□ 1.71
SF3A1-204ENST00000447376 GPATCH8Q9UKJ3 1502 aaKnown RBP25.7■■□□□ 1.7
SF3A1-204ENST00000447376 MAGI2Q86UL8 1455 aa25.7■■□□□ 1.7
SF3A1-204ENST00000447376 ZMYM4Q5VZL5 1548 aa25.69■■□□□ 1.7
SF3A1-204ENST00000447376 ITSN2Q9NZM3 1697 aa25.69■■□□□ 1.7
SF3A1-204ENST00000447376 MYT1LQ9UL68 1186 aa25.69■■□□□ 1.7
SF3A1-204ENST00000447376 LRRC9Q6ZRR7 1453 aa25.67■■□□□ 1.7
SF3A1-204ENST00000447376 ZFYVE16Q7Z3T8 1539 aa25.67■■□□□ 1.7
SF3A1-204ENST00000447376 ARHGEF40Q8TER5 1519 aa25.67■■□□□ 1.7
SF3A1-204ENST00000447376 ABCC1P33527 1531 aa25.66■■□□□ 1.7
SF3A1-204ENST00000447376 PLEKHH2Q8IVE3 1493 aa25.66■■□□□ 1.7
SF3A1-204ENST00000447376 NCOA2Q15596 1464 aa25.65■■□□□ 1.7
SF3A1-204ENST00000447376 ARID4BQ4LE39 1312 aaPredicted RBP25.63■■□□□ 1.69
SF3A1-204ENST00000447376 KDM4FA0A1W2PPD8 638 aa25.61■■□□□ 1.69
SF3A1-204ENST00000447376 SAMD9LQ8IVG5 1584 aa25.61■■□□□ 1.69
SF3A1-204ENST00000447376 AFAP1Q8N556 730 aa25.6■■□□□ 1.69
SF3A1-204ENST00000447376 KDM5CP41229 1560 aa25.59■■□□□ 1.69
SF3A1-204ENST00000447376 SYCP2Q9BX26 1530 aa25.58■■□□□ 1.68
SF3A1-204ENST00000447376 HECW2Q9P2P5 1572 aa25.57■■□□□ 1.68
SF3A1-204ENST00000447376 YEATS2Q9ULM3 1422 aa25.56■■□□□ 1.68
SF3A1-204ENST00000447376 KIAA1107Q9UPP5 1409 aa25.56■■□□□ 1.68
SF3A1-204ENST00000447376 TRAPPC8Q9Y2L5 1435 aa25.55■■□□□ 1.68
SF3A1-204ENST00000447376 KANK4Q5T7N3 995 aaPredicted RBP25.55■■□□□ 1.68
SF3A1-204ENST00000447376 ARHGEF12Q9NZN5 1544 aa25.54■■□□□ 1.68
SF3A1-204ENST00000447376 HNRNPMP52272 730 aaKnown RBP eCLIP25.54■■□□□ 1.68
SF3A1-204ENST00000447376 ATP10AO60312 1499 aa25.53■■□□□ 1.68
SF3A1-204ENST00000447376 MLH3Q9UHC1 1453 aa25.53■■□□□ 1.68
SF3A1-204ENST00000447376 C9orf84Q5VXU9 1444 aa25.52■■□□□ 1.68
SF3A1-204ENST00000447376 SPAG9O60271 1321 aaKnown RBP25.5■■□□□ 1.67
SF3A1-204ENST00000447376 CAMSAP2Q08AD1 1489 aa25.47■■□□□ 1.67
SF3A1-204ENST00000447376 ZNF644Q9H582 1327 aaPredicted RBP25.46■■□□□ 1.67
SF3A1-204ENST00000447376 BCORL1Q5H9F3 1711 aa25.46■■□□□ 1.67
SF3A1-204ENST00000447376 MYOM3Q5VTT5 1437 aa25.46■■□□□ 1.67
SF3A1-204ENST00000447376 RSPH4AQ5TD94 716 aa25.45■■□□□ 1.66
SF3A1-204ENST00000447376 DIP2CQ9Y2E4 1556 aa25.44■■□□□ 1.66
SF3A1-204ENST00000447376 MIA2Q96PC5 1412 aa25.43■■□□□ 1.66
SF3A1-204ENST00000447376 ABCA6Q8N139 1617 aa25.42■■□□□ 1.66
SF3A1-204ENST00000447376 ATP7AQ04656 1500 aa25.42■■□□□ 1.66
SF3A1-204ENST00000447376 KIDINS220Q9ULH0 1771 aa25.41■■□□□ 1.66
SF3A1-204ENST00000447376 ADAMTSL3P82987 1691 aa25.4■■□□□ 1.66
SF3A1-204ENST00000447376 CCDC141Q6ZP82 1450 aa25.4■■□□□ 1.66
SF3A1-204ENST00000447376 REREQ9P2R6 1566 aa25.39■■□□□ 1.66
SF3A1-204ENST00000447376 MLECQ14165 292 aa25.39■■□□□ 1.66
SF3A1-204ENST00000447376 MBD5Q9P267 1494 aa25.39■■□□□ 1.65
SF3A1-204ENST00000447376 INO80Q9ULG1 1556 aaPredicted RBP25.37■■□□□ 1.65
SF3A1-204ENST00000447376 TSPY4P0CV99 314 aa25.37■■□□□ 1.65
SF3A1-204ENST00000447376 TSPY10P0CW01 314 aa25.37■■□□□ 1.65
SF3A1-204ENST00000447376 MADDQ8WXG6 1647 aa25.35■■□□□ 1.65
SF3A1-204ENST00000447376 RTEL1-TNFRSF6BF6WH68 1400 aa25.35■■□□□ 1.65
SF3A1-204ENST00000447376 ARHGEF5Q12774 1597 aa25.35■■□□□ 1.65
SF3A1-204ENST00000447376 SIGLEC1Q9BZZ2 1709 aa25.32■■□□□ 1.64
SF3A1-204ENST00000447376 ESF1Q9H501 851 aaKnown RBP25.32■■□□□ 1.64
SF3A1-204ENST00000447376 AGLP35573 1532 aa25.32■■□□□ 1.64
SF3A1-204ENST00000447376 PTPRMP28827 1452 aa25.31■■□□□ 1.64
SF3A1-204ENST00000447376 RIMS1Q86UR5 1692 aaKnown RBP25.3■■□□□ 1.64
SF3A1-204ENST00000447376 ADGBQ8N7X0 1667 aa25.29■■□□□ 1.64
SF3A1-204ENST00000447376 A2MP01023 1474 aa25.29■■□□□ 1.64
SF3A1-204ENST00000447376 PTPN23Q9H3S7 1636 aa25.29■■□□□ 1.64
SF3A1-204ENST00000447376 FGD6Q6ZV73 1430 aa25.29■■□□□ 1.64
SF3A1-204ENST00000447376 FER1L4A9Z1Z3 1794 aa25.28■■□□□ 1.64
SF3A1-204ENST00000447376 PLPPR3Q6T4P5 718 aa25.21■■□□□ 1.63
SF3A1-204ENST00000447376 PLXNC1O60486 1568 aa25.21■■□□□ 1.63
SF3A1-204ENST00000447376 TCOF1Q13428 1488 aaKnown RBP25.21■■□□□ 1.63
SF3A1-204ENST00000447376 MAST1Q9Y2H9 1570 aa25.2■■□□□ 1.62
SF3A1-204ENST00000447376 DHX29Q7Z478 1369 aaKnown RBP25.19■■□□□ 1.62
SF3A1-204ENST00000447376 FAM50AQ14320 339 aaKnown RBP25.18■■□□□ 1.62
SF3A1-204ENST00000447376 CNTLNQ9NXG0 1405 aa25.17■■□□□ 1.62
SF3A1-204ENST00000447376 DNMT1P26358 1616 aaKnown RBP25.15■■□□□ 1.62
SF3A1-204ENST00000447376 SHANK2Q9UPX8 1470 aa25.15■■□□□ 1.62
SF3A1-204ENST00000447376 GGT6Q6P531 493 aa25.15■■□□□ 1.62
SF3A1-204ENST00000447376 CROCC2H7BZ55 1655 aa25.14■■□□□ 1.62
SF3A1-204ENST00000447376 DAPK1P53355 1430 aa25.14■■□□□ 1.62
SF3A1-204ENST00000447376 PPARGC1BQ86YN6 1023 aaKnown RBP25.13■■□□□ 1.61
SF3A1-204ENST00000447376 KIF3BO15066 747 aa25.12■■□□□ 1.61
SF3A1-204ENST00000447376 PPP6R1Q9UPN7 881 aa25.12■■□□□ 1.61
SF3A1-204ENST00000447376 ABCC5O15440 1437 aa25.12■■□□□ 1.61
SF3A1-204ENST00000447376 ANKRD30AQ9BXX3 1397 aa25.07■■□□□ 1.6
SF3A1-204ENST00000447376 DUOX2Q9NRD8 1548 aa25.07■■□□□ 1.6
SF3A1-204ENST00000447376 KIF15Q9NS87 1388 aa25.05■■□□□ 1.6
SF3A1-204ENST00000447376 MROH2AA6NES4 1674 aa25.05■■□□□ 1.6
SF3A1-204ENST00000447376 CEBPAP49715 358 aaPredicted RBP25.05■■□□□ 1.6
SF3A1-204ENST00000447376 CHIC2Q9UKJ5 165 aa25.05■■□□□ 1.6
SF3A1-204ENST00000447376 EIF2AK4Q9P2K8 1649 aaKnown RBP25.04■■□□□ 1.6
SF3A1-204ENST00000447376 RRP7BPQ9NSQ0 103 aa25.03■■□□□ 1.6
SF3A1-204ENST00000447376 CLTCQ00610 1675 aaKnown RBP25.03■■□□□ 1.6
SF3A1-204ENST00000447376 FAM135AQ9P2D6 1515 aa25.02■■□□□ 1.6
SF3A1-204ENST00000447376 C3P01024 1663 aa25.02■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms