RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.13□□□□□ -0.95
VPS41-207ENST00000439468 TMC2Q8TDI7 906 aa9.12□□□□□ -0.95
VPS41-207ENST00000439468 LCE2DQ5TA82 110 aaPredicted RBP9.11□□□□□ -0.95
VPS41-207ENST00000439468 C2orf72A6NCS6 295 aa9.08□□□□□ -0.96
VPS41-207ENST00000439468 ZNF710Q8N1W2 664 aa9.08□□□□□ -0.96
VPS41-207ENST00000439468 ST18O60284 1047 aa9.07□□□□□ -0.96
VPS41-207ENST00000439468 DOK7Q18PE1 504 aa9.07□□□□□ -0.96
VPS41-207ENST00000439468 CFAP44Q96MT7 982 aa9.07□□□□□ -0.96
VPS41-207ENST00000439468 PAXIP1Q6ZW49 1069 aaPredicted RBP9.06□□□□□ -0.96
VPS41-207ENST00000439468 SPRYD3Q8NCJ5 442 aa9.06□□□□□ -0.96
VPS41-207ENST00000439468 RIMBP2O15034 1052 aa9.05□□□□□ -0.96
VPS41-207ENST00000439468 PCDH10Q9P2E7 1040 aa9.03□□□□□ -0.96
VPS41-207ENST00000439468 KIF3CO14782 793 aa9.02□□□□□ -0.97
VPS41-207ENST00000439468 HOXB3P14651 431 aaPredicted RBP9.02□□□□□ -0.97
VPS41-207ENST00000439468 MARVELD3Q96A59 401 aa9.01□□□□□ -0.97
VPS41-207ENST00000439468 EMP3P54852 163 aa8.99□□□□□ -0.97
VPS41-207ENST00000439468 GPHNQ9NQX3 736 aaPredicted RBP8.99□□□□□ -0.97
VPS41-207ENST00000439468 PDE4AP27815 886 aa8.97□□□□□ -0.97
VPS41-207ENST00000439468 DSG2Q14126 1118 aa8.97□□□□□ -0.97
VPS41-207ENST00000439468 PLPP6Q8IY26 295 aa8.97□□□□□ -0.97
VPS41-207ENST00000439468 SLC24A1O60721 1099 aa8.96□□□□□ -0.98
VPS41-207ENST00000439468 FOXK1P85037 733 aa8.96□□□□□ -0.98
VPS41-207ENST00000439468 LARP6Q9BRS8 491 aaKnown RBP8.96□□□□□ -0.98
VPS41-207ENST00000439468 CADPS2Q86UW7 1296 aa8.95□□□□□ -0.98
VPS41-207ENST00000439468 CRISPLD2Q9H0B8 497 aa8.95□□□□□ -0.98
VPS41-207ENST00000439468 NCKAP5LQ9HCH0 1330 aa8.95□□□□□ -0.98
VPS41-207ENST00000439468 HOXB1P14653 301 aaPredicted RBP8.94□□□□□ -0.98
VPS41-207ENST00000439468 ARSIQ5FYB1 569 aa8.94□□□□□ -0.98
VPS41-207ENST00000439468 PPP1R15BQ5SWA1 713 aa8.94□□□□□ -0.98
VPS41-207ENST00000439468 ZSWIM6Q9HCJ5 1215 aa8.94□□□□□ -0.98
VPS41-207ENST00000439468 DDX27Q96GQ7 796 aaKnown RBP8.93□□□□□ -0.98
VPS41-207ENST00000439468 FAM205CA6NFA0 338 aa8.92□□□□□ -0.98
VPS41-207ENST00000439468 ERBB3P21860 1342 aa8.91□□□□□ -0.98
VPS41-207ENST00000439468 KHSRPQ92945 711 aaKnown RBP eCLIP8.91□□□□□ -0.98
VPS41-207ENST00000439468 GPR153Q6NV75 609 aa8.9□□□□□ -0.98
VPS41-207ENST00000439468 UPF1Q92900 1129 aaKnown RBP eCLIP8.9□□□□□ -0.98
VPS41-207ENST00000439468 PCDHGA4Q9Y5G9 962 aa8.9□□□□□ -0.98
VPS41-207ENST00000439468 SLC34A2O95436 690 aa8.88□□□□□ -0.99
VPS41-207ENST00000439468 NUDT7P0C024 238 aa8.88□□□□□ -0.99
VPS41-207ENST00000439468 HS3ST6Q96QI5 342 aa8.88□□□□□ -0.99
VPS41-207ENST00000439468 TBC1D12O60347 775 aa8.87□□□□□ -0.99
VPS41-207ENST00000439468 VARS2Q5ST30 1063 aaKnown RBP8.86□□□□□ -0.99
VPS41-207ENST00000439468 CDAN1Q8IWY9 1227 aa8.86□□□□□ -0.99
VPS41-207ENST00000439468 MFSD10Q14728 455 aa8.85□□□□□ -0.99
VPS41-207ENST00000439468 PTCD2Q8WV60 388 aaKnown RBP8.84□□□□□ -0.99
VPS41-207ENST00000439468 WDR70Q9NW82 654 aa8.84□□□□□ -0.99
VPS41-207ENST00000439468 ZNF316A6NFI3 1004 aaPredicted RBP8.82□□□□□ -1
VPS41-207ENST00000439468 TSHZ2Q9NRE2 1034 aa8.82□□□□□ -1
VPS41-207ENST00000439468 POTEB3A0JP26 581 aa8.81□□□□□ -1
VPS41-207ENST00000439468 PLCB2Q00722 1185 aa8.81□□□□□ -1
VPS41-207ENST00000439468 POTEBQ6S5H4 581 aa8.81□□□□□ -1
VPS41-207ENST00000439468 LHX6Q9UPM6 363 aa8.81□□□□□ -1
VPS41-207ENST00000439468 MAP3K9P80192 1104 aa8.8□□□□□ -1
VPS41-207ENST00000439468 OXER1Q8TDS5 423 aa8.8□□□□□ -1
VPS41-207ENST00000439468 EMILIN3Q9NT22 766 aa8.77□□□□□ -1.01
VPS41-207ENST00000439468 HAP1P54257 671 aaPredicted RBP8.76□□□□□ -1.01
VPS41-207ENST00000439468 EVI5O60447 810 aa8.75□□□□□ -1.01
VPS41-207ENST00000439468 PSDA5PKW4 1024 aaPredicted RBP8.74□□□□□ -1.01
VPS41-207ENST00000439468 DPYSL4O14531 572 aa8.74□□□□□ -1.01
VPS41-207ENST00000439468 ZNF687Q8N1G0 1237 aa8.74□□□□□ -1.01
VPS41-207ENST00000439468 E2F4Q16254 413 aa8.73□□□□□ -1.01
VPS41-207ENST00000439468 CAMK2BQ13554 666 aa8.72□□□□□ -1.01
VPS41-207ENST00000439468 PPP4R3BQ5MIZ7 849 aa8.72□□□□□ -1.01
VPS41-207ENST00000439468 ZNF454Q8N9F8 522 aa8.72□□□□□ -1.01
VPS41-207ENST00000439468 KDM4FA0A1W2PPD8 638 aa8.71□□□□□ -1.02
VPS41-207ENST00000439468 KRTAP3-3Q9BYR6 98 aa8.7□□□□□ -1.02
VPS41-207ENST00000439468 KRTAP3-2Q9BYR7 98 aa8.7□□□□□ -1.02
VPS41-207ENST00000439468 AXIN2Q9Y2T1 843 aa8.68□□□□□ -1.02
VPS41-207ENST00000439468 PBX2P40425 430 aa8.66□□□□□ -1.02
VPS41-207ENST00000439468 ANKRD13DQ6ZTN6 518 aa8.66□□□□□ -1.02
VPS41-207ENST00000439468 KCNH8Q96L42 1107 aa8.66□□□□□ -1.02
VPS41-207ENST00000439468 MMRN1Q13201 1228 aa8.65□□□□□ -1.02
VPS41-207ENST00000439468 JPH4Q96JJ6 628 aa8.65□□□□□ -1.02
VPS41-207ENST00000439468 ANO8Q9HCE9 1232 aaPredicted RBP8.65□□□□□ -1.02
VPS41-207ENST00000439468 FOSBP53539 338 aa8.64□□□□□ -1.03
VPS41-207ENST00000439468 KCNK17Q96T54 332 aa8.64□□□□□ -1.03
VPS41-207ENST00000439468 ARHGAP33O14559 1287 aa8.63□□□□□ -1.03
VPS41-207ENST00000439468 LSM11P83369 360 aaKnown RBP eCLIP8.63□□□□□ -1.03
VPS41-207ENST00000439468 SPNS2Q8IVW8 549 aa8.63□□□□□ -1.03
VPS41-207ENST00000439468 DDX12PQ92771 950 aa8.63□□□□□ -1.03
VPS41-207ENST00000439468 ZDHHC16Q969W1 377 aa8.63□□□□□ -1.03
VPS41-207ENST00000439468 PSEN2P49810 448 aa8.62□□□□□ -1.03
VPS41-207ENST00000439468 PDIA6Q15084 440 aa8.62□□□□□ -1.03
VPS41-207ENST00000439468 SPDYE16A6NNV3 312 aaPredicted RBP8.61□□□□□ -1.03
VPS41-207ENST00000439468 POTEEQ6S8J3 1075 aa8.61□□□□□ -1.03
VPS41-207ENST00000439468 KCNV2Q8TDN2 545 aa8.61□□□□□ -1.03
VPS41-207ENST00000439468 PHF14O94880 888 aa8.6□□□□□ -1.03
VPS41-207ENST00000439468 PTPREP23469 700 aa8.6□□□□□ -1.03
VPS41-207ENST00000439468 TYW1BQ6NUM6 668 aa8.6□□□□□ -1.03
VPS41-207ENST00000439468 P3H3Q8IVL6 736 aa8.6□□□□□ -1.03
VPS41-207ENST00000439468 PCDHGA10Q9Y5H3 936 aa8.6□□□□□ -1.03
VPS41-207ENST00000439468 NBR1Q14596 966 aa8.59□□□□□ -1.03
VPS41-207ENST00000439468 RBM33Q96EV2 1170 aaKnown RBP8.59□□□□□ -1.03
VPS41-207ENST00000439468 ADAM33Q9BZ11 813 aa8.59□□□□□ -1.03
VPS41-207ENST00000439468 GRXCR2A6NFK2 248 aa8.58□□□□□ -1.04
VPS41-207ENST00000439468 DMRTA1Q5VZB9 504 aa8.58□□□□□ -1.04
VPS41-207ENST00000439468 BCL2L12Q9HB09 334 aa8.58□□□□□ -1.04
VPS41-207ENST00000439468 ARIH1Q9Y4X5 557 aaPredicted RBP8.58□□□□□ -1.04
VPS41-207ENST00000439468 FBXW7Q969H0 707 aa8.57□□□□□ -1.04
VPS41-207ENST00000439468 EPAS1Q99814 870 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms