RNA–Protein interactions for RNA: ENST00000432425.5

CLK1-204, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 1,682 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-204ENST00000432425 SPRYD3Q8NCJ5 442 aa9.35□□□□□ -0.91
CLK1-204ENST00000432425 TMEM92Q6UXU6 159 aa9.34□□□□□ -0.91
CLK1-204ENST00000432425 PAXIP1Q6ZW49 1069 aaPredicted RBP9.32□□□□□ -0.92
CLK1-204ENST00000432425 TMC2Q8TDI7 906 aa9.32□□□□□ -0.92
CLK1-204ENST00000432425 CFAP44Q96MT7 982 aa9.32□□□□□ -0.92
CLK1-204ENST00000432425 FAM163AQ96GL9 167 aaPredicted RBP9.31□□□□□ -0.92
CLK1-204ENST00000432425 C2orf72A6NCS6 295 aa9.29□□□□□ -0.92
CLK1-204ENST00000432425 KIF3CO14782 793 aa9.27□□□□□ -0.93
CLK1-204ENST00000432425 DOK7Q18PE1 504 aa9.26□□□□□ -0.93
CLK1-204ENST00000432425 RIMBP2O15034 1052 aa9.24□□□□□ -0.93
CLK1-204ENST00000432425 ZNF710Q8N1W2 664 aa9.24□□□□□ -0.93
CLK1-204ENST00000432425 GPHNQ9NQX3 736 aaPredicted RBP9.24□□□□□ -0.93
CLK1-204ENST00000432425 ST18O60284 1047 aa9.23□□□□□ -0.93
CLK1-204ENST00000432425 HOXB3P14651 431 aaPredicted RBP9.23□□□□□ -0.93
CLK1-204ENST00000432425 PDE4AP27815 886 aa9.23□□□□□ -0.93
CLK1-204ENST00000432425 CRISPLD2Q9H0B8 497 aa9.22□□□□□ -0.93
CLK1-204ENST00000432425 FOXK1P85037 733 aa9.2□□□□□ -0.94
CLK1-204ENST00000432425 LCE2DQ5TA82 110 aaPredicted RBP9.2□□□□□ -0.94
CLK1-204ENST00000432425 CADPS2Q86UW7 1296 aa9.2□□□□□ -0.94
CLK1-204ENST00000432425 PLPP6Q8IY26 295 aa9.2□□□□□ -0.94
CLK1-204ENST00000432425 NCKAP5LQ9HCH0 1330 aa9.19□□□□□ -0.94
CLK1-204ENST00000432425 DSG2Q14126 1118 aa9.19□□□□□ -0.94
CLK1-204ENST00000432425 LARP6Q9BRS8 491 aaKnown RBP9.18□□□□□ -0.94
CLK1-204ENST00000432425 PPP1R15BQ5SWA1 713 aa9.17□□□□□ -0.94
CLK1-204ENST00000432425 ZSWIM6Q9HCJ5 1215 aa9.17□□□□□ -0.94
CLK1-204ENST00000432425 DDX27Q96GQ7 796 aaKnown RBP9.16□□□□□ -0.94
CLK1-204ENST00000432425 EMP3P54852 163 aa9.14□□□□□ -0.95
CLK1-204ENST00000432425 SLC34A2O95436 690 aa9.13□□□□□ -0.95
CLK1-204ENST00000432425 HOXB1P14653 301 aaPredicted RBP9.13□□□□□ -0.95
CLK1-204ENST00000432425 PLCB2Q00722 1185 aa9.13□□□□□ -0.95
CLK1-204ENST00000432425 MFSD10Q14728 455 aa9.13□□□□□ -0.95
CLK1-204ENST00000432425 MARVELD3Q96A59 401 aa9.13□□□□□ -0.95
CLK1-204ENST00000432425 ARSIQ5FYB1 569 aa9.12□□□□□ -0.95
CLK1-204ENST00000432425 GPR153Q6NV75 609 aa9.11□□□□□ -0.95
CLK1-204ENST00000432425 TSHZ2Q9NRE2 1034 aa9.1□□□□□ -0.95
CLK1-204ENST00000432425 PCDHGA4Q9Y5G9 962 aa9.1□□□□□ -0.95
CLK1-204ENST00000432425 TBC1D12O60347 775 aa9.09□□□□□ -0.95
CLK1-204ENST00000432425 PTCD2Q8WV60 388 aaKnown RBP9.08□□□□□ -0.96
CLK1-204ENST00000432425 UPF1Q92900 1129 aaKnown RBP eCLIP9.08□□□□□ -0.96
CLK1-204ENST00000432425 KHSRPQ92945 711 aaKnown RBP eCLIP9.08□□□□□ -0.965e-8■■■□□ 15.6
CLK1-204ENST00000432425 WDR70Q9NW82 654 aa9.08□□□□□ -0.96
CLK1-204ENST00000432425 ERBB3P21860 1342 aa9.06□□□□□ -0.96
CLK1-204ENST00000432425 FAM205CA6NFA0 338 aa9.06□□□□□ -0.96
CLK1-204ENST00000432425 NUDT7P0C024 238 aa9.06□□□□□ -0.96
CLK1-204ENST00000432425 OXER1Q8TDS5 423 aa9.05□□□□□ -0.96
CLK1-204ENST00000432425 HAP1P54257 671 aaPredicted RBP9.04□□□□□ -0.96
CLK1-204ENST00000432425 HS3ST6Q96QI5 342 aa9.03□□□□□ -0.96
CLK1-204ENST00000432425 ZNF316A6NFI3 1004 aaPredicted RBP9.01□□□□□ -0.97
CLK1-204ENST00000432425 MAP3K9P80192 1104 aa9.01□□□□□ -0.97
CLK1-204ENST00000432425 CAMK2BQ13554 666 aa9.01□□□□□ -0.97
CLK1-204ENST00000432425 VARS2Q5ST30 1063 aaKnown RBP9□□□□□ -0.97
CLK1-204ENST00000432425 EMILIN3Q9NT22 766 aa9□□□□□ -0.97
CLK1-204ENST00000432425 CDAN1Q8IWY9 1227 aa9□□□□□ -0.97
CLK1-204ENST00000432425 E2F4Q16254 413 aa8.99□□□□□ -0.97
CLK1-204ENST00000432425 LHX6Q9UPM6 363 aa8.99□□□□□ -0.97
CLK1-204ENST00000432425 POTEB3A0JP26 581 aa8.97□□□□□ -0.97
CLK1-204ENST00000432425 POTEBQ6S5H4 581 aa8.97□□□□□ -0.97
CLK1-204ENST00000432425 EVI5O60447 810 aa8.97□□□□□ -0.97
CLK1-204ENST00000432425 KDM4FA0A1W2PPD8 638 aa8.96□□□□□ -0.98
CLK1-204ENST00000432425 PSDA5PKW4 1024 aaPredicted RBP8.96□□□□□ -0.98
CLK1-204ENST00000432425 DPYSL4O14531 572 aa8.95□□□□□ -0.98
CLK1-204ENST00000432425 ZNF687Q8N1G0 1237 aa8.93□□□□□ -0.98
CLK1-204ENST00000432425 PPP4R3BQ5MIZ7 849 aa8.92□□□□□ -0.98
CLK1-204ENST00000432425 ANO8Q9HCE9 1232 aaPredicted RBP8.91□□□□□ -0.98
CLK1-204ENST00000432425 ZNF454Q8N9F8 522 aa8.9□□□□□ -0.98
CLK1-204ENST00000432425 SPDYE16A6NNV3 312 aaPredicted RBP8.89□□□□□ -0.99
CLK1-204ENST00000432425 ARIH1Q9Y4X5 557 aaPredicted RBP8.89□□□□□ -0.99
CLK1-204ENST00000432425 P3H3Q8IVL6 736 aa8.88□□□□□ -0.99
CLK1-204ENST00000432425 JPH4Q96JJ6 628 aa8.88□□□□□ -0.99
CLK1-204ENST00000432425 FOSBP53539 338 aa8.87□□□□□ -0.99
CLK1-204ENST00000432425 PDIA6Q15084 440 aa8.87□□□□□ -0.99
CLK1-204ENST00000432425 KCNV2Q8TDN2 545 aa8.87□□□□□ -0.99
CLK1-204ENST00000432425 PBX2P40425 430 aa8.86□□□□□ -0.99
CLK1-204ENST00000432425 VSIG10Q8N0Z9 540 aa8.86□□□□□ -0.99
CLK1-204ENST00000432425 KRTAP3-3Q9BYR6 98 aa8.86□□□□□ -0.99
CLK1-204ENST00000432425 KRTAP3-2Q9BYR7 98 aa8.86□□□□□ -0.99
CLK1-204ENST00000432425 ARHGEF1Q92888 912 aaKnown RBP8.85□□□□□ -0.99
CLK1-204ENST00000432425 KCNH8Q96L42 1107 aa8.85□□□□□ -0.99
CLK1-204ENST00000432425 ZDHHC16Q969W1 377 aa8.84□□□□□ -0.99
CLK1-204ENST00000432425 KDM2AQ9Y2K7 1162 aa8.84□□□□□ -0.99
CLK1-204ENST00000432425 PHF14O94880 888 aa8.83□□□□□ -1
CLK1-204ENST00000432425 ARHGAP33O14559 1287 aa8.82□□□□□ -1
CLK1-204ENST00000432425 PTGER2P43116 358 aa8.82□□□□□ -1
CLK1-204ENST00000432425 MMRN1Q13201 1228 aa8.82□□□□□ -1
CLK1-204ENST00000432425 DDX12PQ92771 950 aa8.82□□□□□ -1
CLK1-204ENST00000432425 AXIN2Q9Y2T1 843 aa8.82□□□□□ -1
CLK1-204ENST00000432425 TYW1BQ6NUM6 668 aa8.81□□□□□ -1
CLK1-204ENST00000432425 EPAS1Q99814 870 aa8.81□□□□□ -1
CLK1-204ENST00000432425 PCDHGA10Q9Y5H3 936 aa8.81□□□□□ -1
CLK1-204ENST00000432425 FBXW7Q969H0 707 aa8.81□□□□□ -1
CLK1-204ENST00000432425 KCNK17Q96T54 332 aa8.81□□□□□ -1
CLK1-204ENST00000432425 BCL2L12Q9HB09 334 aa8.81□□□□□ -1
CLK1-204ENST00000432425 LSM11P83369 360 aaKnown RBP eCLIP8.8□□□□□ -15e-9■■□□□ 11.5
CLK1-204ENST00000432425 POTEEQ6S8J3 1075 aa8.8□□□□□ -1
CLK1-204ENST00000432425 PTPREP23469 700 aa8.79□□□□□ -1
CLK1-204ENST00000432425 ANKRD13DQ6ZTN6 518 aa8.79□□□□□ -1
CLK1-204ENST00000432425 ADAM33Q9BZ11 813 aa8.79□□□□□ -1
CLK1-204ENST00000432425 PSEN2P49810 448 aa8.78□□□□□ -1
CLK1-204ENST00000432425 NBR1Q14596 966 aa8.78□□□□□ -1
CLK1-204ENST00000432425 GRXCR2A6NFK2 248 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms