RNA–Protein interactions for RNA: ENST00000430976.5

PTPN4-203, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 4,154 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-203ENST00000430976 ADRA2BP18089 450 aa7.12□□□□□ -1.27
PTPN4-203ENST00000430976 CC2D1BQ5T0F9 858 aaKnown RBP7.12□□□□□ -1.27
PTPN4-203ENST00000430976 FOXD1Q16676 465 aa7.12□□□□□ -1.27
PTPN4-203ENST00000430976 NOL8Q76FK4 1167 aaKnown RBP7.12□□□□□ -1.27
PTPN4-203ENST00000430976 P3H3Q8IVL6 736 aa7.12□□□□□ -1.27
PTPN4-203ENST00000430976 ANP32BQ92688 251 aaKnown RBP7.12□□□□□ -1.27
PTPN4-203ENST00000430976 STAC3Q96MF2 364 aa7.11□□□□□ -1.27
PTPN4-203ENST00000430976 ZBTB12Q9Y330 459 aaPredicted RBP7.11□□□□□ -1.27
PTPN4-203ENST00000430976 MYCNP04198 464 aaPredicted RBP7.1□□□□□ -1.27
PTPN4-203ENST00000430976 TMX4Q9H1E5 349 aaPredicted RBP7.1□□□□□ -1.27
PTPN4-203ENST00000430976 MCCP23508 829 aa7.09□□□□□ -1.27
PTPN4-203ENST00000430976 DNAJC2Q99543 621 aaKnown RBP7.09□□□□□ -1.27
PTPN4-203ENST00000430976 CDCA8Q53HL2 280 aa7.09□□□□□ -1.27
PTPN4-203ENST00000430976 PLEKHD1A6NEE1 506 aa7.09□□□□□ -1.28
PTPN4-203ENST00000430976 FOSBP53539 338 aa7.08□□□□□ -1.28
PTPN4-203ENST00000430976 NPM1P06748 294 aaKnown RBP eCLIP7.08□□□□□ -1.28
PTPN4-203ENST00000430976 TMCO4Q5TGY1 634 aa7.08□□□□□ -1.28
PTPN4-203ENST00000430976 ARMCX6Q7L4S7 300 aa7.08□□□□□ -1.28
PTPN4-203ENST00000430976 SETQ01105 290 aaPredicted RBP7.07□□□□□ -1.28
PTPN4-203ENST00000430976 ZNF622Q969S3 477 aaKnown RBP eCLIP7.07□□□□□ -1.28
PTPN4-203ENST00000430976 ARID4AP29374 1257 aaPredicted RBP7.07□□□□□ -1.28
PTPN4-203ENST00000430976 C1orf115Q9H7X2 142 aa7.06□□□□□ -1.28
PTPN4-203ENST00000430976 RNF216Q9NWF9 866 aaPredicted RBP7.06□□□□□ -1.28
PTPN4-203ENST00000430976 MSH5O43196 834 aa7.06□□□□□ -1.28
PTPN4-203ENST00000430976 POLD1P28340 1107 aa7.05□□□□□ -1.28
PTPN4-203ENST00000430976 LMOD2Q6P5Q4 547 aa7.05□□□□□ -1.28
PTPN4-203ENST00000430976 TRIM41Q8WV44 630 aa7.05□□□□□ -1.28
PTPN4-203ENST00000430976 PIK3R5Q8WYR1 880 aa7.05□□□□□ -1.28
PTPN4-203ENST00000430976 ZHX1Q9UKY1 873 aaPredicted RBP7.05□□□□□ -1.28
PTPN4-203ENST00000430976 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.04□□□□□ -1.28
PTPN4-203ENST00000430976 GZF1Q9H116 711 aaPredicted RBP7.04□□□□□ -1.28
PTPN4-203ENST00000430976 SMARCA5O60264 1052 aaPredicted RBP7.04□□□□□ -1.28
PTPN4-203ENST00000430976 ZNF830Q96NB3 372 aaPredicted RBP7.03□□□□□ -1.28
PTPN4-203ENST00000430976 NPM3O75607 178 aaKnown RBP7.02□□□□□ -1.29
PTPN4-203ENST00000430976 MIER1Q8N108 512 aa7.01□□□□□ -1.29
PTPN4-203ENST00000430976 PHF14O94880 888 aa7.01□□□□□ -1.29
PTPN4-203ENST00000430976 MFAP1P55081 439 aaKnown RBP7.01□□□□□ -1.29
PTPN4-203ENST00000430976 RBM26Q5T8P6 1007 aaKnown RBP7.01□□□□□ -1.29
PTPN4-203ENST00000430976 FBXW7Q969H0 707 aa7.01□□□□□ -1.29
PTPN4-203ENST00000430976 GRIPAP1Q4V328 841 aa7□□□□□ -1.29
PTPN4-203ENST00000430976 CREBRFQ8IUR6 639 aa7□□□□□ -1.29
PTPN4-203ENST00000430976 PEX14O75381 377 aa6.99□□□□□ -1.29
PTPN4-203ENST00000430976 HSP90AB4PQ58FF6 505 aa6.99□□□□□ -1.29
PTPN4-203ENST00000430976 RGL3Q3MIN7 710 aa6.99□□□□□ -1.29
PTPN4-203ENST00000430976 BRD1O95696 1058 aa6.98□□□□□ -1.29
PTPN4-203ENST00000430976 TMTC2Q8N394 836 aa6.98□□□□□ -1.29
PTPN4-203ENST00000430976 RGS22Q8NE09 1264 aa6.98□□□□□ -1.29
PTPN4-203ENST00000430976 STK24Q9Y6E0 443 aa6.98□□□□□ -1.29
PTPN4-203ENST00000430976 CC2D2BQ6DHV5 1058 aa6.98□□□□□ -1.29
PTPN4-203ENST00000430976 AXDND1Q5T1B0 1012 aaPredicted RBP6.97□□□□□ -1.29
PTPN4-203ENST00000430976 BRPF1P55201 1214 aaPredicted RBP6.96□□□□□ -1.29
PTPN4-203ENST00000430976 PNNQ9H307 717 aaKnown RBP6.96□□□□□ -1.3
PTPN4-203ENST00000430976 ZNF513Q8N8E2 541 aaPredicted RBP6.96□□□□□ -1.3
PTPN4-203ENST00000430976 SPINK5Q9NQ38 1064 aaPredicted RBP6.96□□□□□ -1.3
PTPN4-203ENST00000430976 GOLIM4O00461 696 aa6.94□□□□□ -1.3
PTPN4-203ENST00000430976 RBM27Q9P2N5 1060 aaKnown RBP6.94□□□□□ -1.3
PTPN4-203ENST00000430976 ANP32CO43423 234 aa6.94□□□□□ -1.3
PTPN4-203ENST00000430976 TRIM44Q96DX7 344 aaPredicted RBP6.94□□□□□ -1.3
PTPN4-203ENST00000430976 CHRM1P11229 460 aaPredicted RBP6.93□□□□□ -1.3
PTPN4-203ENST00000430976 GORABQ5T7V8 394 aa6.92□□□□□ -1.3
PTPN4-203ENST00000430976 TNNT3P45378 269 aaPredicted RBP6.92□□□□□ -1.3
PTPN4-203ENST00000430976 CCDC82Q8N4S0 544 aa6.92□□□□□ -1.3
PTPN4-203ENST00000430976 CALD1Q05682 793 aaKnown RBP6.92□□□□□ -1.3
PTPN4-203ENST00000430976 BANK1Q8NDB2 785 aa6.92□□□□□ -1.3
PTPN4-203ENST00000430976 TNNT1P13805 278 aa6.91□□□□□ -1.3
PTPN4-203ENST00000430976 MYH16Q9H6N6 1097 aa6.91□□□□□ -1.3
PTPN4-203ENST00000430976 SSR1P43307 286 aaKnown RBP6.91□□□□□ -1.3
PTPN4-203ENST00000430976 CASC1Q6TDU7 716 aa6.91□□□□□ -1.3
PTPN4-203ENST00000430976 CHMP4CQ96CF2 233 aa6.91□□□□□ -1.3
PTPN4-203ENST00000430976 GPBP1L1Q9HC44 474 aaPredicted RBP6.91□□□□□ -1.3
PTPN4-203ENST00000430976 WDR70Q9NW82 654 aa6.91□□□□□ -1.3
PTPN4-203ENST00000430976 NOP58Q9Y2X3 529 aaKnown RBP6.91□□□□□ -1.3
PTPN4-203ENST00000430976 CSB-PGBD3P0DP91 1061 aa6.91□□□□□ -1.3
PTPN4-203ENST00000430976 SEMA3FQ13275 785 aa6.91□□□□□ -1.3
PTPN4-203ENST00000430976 DNAJC5BQ9UF47 199 aa6.91□□□□□ -1.3
PTPN4-203ENST00000430976 APBB1IPQ7Z5R6 666 aaPredicted RBP6.9□□□□□ -1.3
PTPN4-203ENST00000430976 EXOC8Q8IYI6 725 aa6.9□□□□□ -1.3
PTPN4-203ENST00000430976 SPRYD3Q8NCJ5 442 aa6.9□□□□□ -1.3
PTPN4-203ENST00000430976 KIF4AO95239 1232 aa6.9□□□□□ -1.3
PTPN4-203ENST00000430976 LOC102724159A0A0B4J2E5 919 aa6.9□□□□□ -1.31
PTPN4-203ENST00000430976 DHX16O60231 1041 aaKnown RBP6.9□□□□□ -1.31
PTPN4-203ENST00000430976 PWP2Q15269 919 aaKnown RBP6.9□□□□□ -1.31
PTPN4-203ENST00000430976 CCDC97Q96F63 343 aaPredicted RBP6.9□□□□□ -1.31
PTPN4-203ENST00000430976 C11orf95C9JLR9 678 aaPredicted RBP6.89□□□□□ -1.31
PTPN4-203ENST00000430976 MAFGO15525 162 aa6.89□□□□□ -1.31
PTPN4-203ENST00000430976 CALRP27797 417 aaKnown RBP6.89□□□□□ -1.31
PTPN4-203ENST00000430976 ERICH4A6NGS2 130 aa6.88□□□□□ -1.31
PTPN4-203ENST00000430976 CCER2I3L3R5 266 aa6.88□□□□□ -1.31
PTPN4-203ENST00000430976 SPTY2D1Q68D10 685 aaPredicted RBP6.88□□□□□ -1.31
PTPN4-203ENST00000430976 MARCH6O60337 910 aa6.88□□□□□ -1.31
PTPN4-203ENST00000430976 LMOD3Q0VAK6 560 aa6.87□□□□□ -1.31
PTPN4-203ENST00000430976 CCDC181Q5TID7 509 aa6.87□□□□□ -1.31
PTPN4-203ENST00000430976 ANP32AP39687 249 aaKnown RBP6.87□□□□□ -1.31
PTPN4-203ENST00000430976 NAP1L1P55209 391 aaKnown RBP6.87□□□□□ -1.31
PTPN4-203ENST00000430976 FOXD4Q12950 439 aaPredicted RBP6.87□□□□□ -1.31
PTPN4-203ENST00000430976 TAF3Q5VWG9 929 aa6.87□□□□□ -1.31
PTPN4-203ENST00000430976 ZBTB9Q96C00 473 aa6.87□□□□□ -1.31
PTPN4-203ENST00000430976 ZBTB47Q9UFB7 747 aaPredicted RBP6.87□□□□□ -1.31
PTPN4-203ENST00000430976 MRVI1Q9Y6F6 885 aa6.87□□□□□ -1.31
PTPN4-203ENST00000430976 NGEFQ8N5V2 710 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms