RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 NCKAP5LQ9HCH0 1330 aa5.7□□□□□ -1.5
VPS13A-208ENST00000423463 SCUBE2Q9NQ36 999 aa5.7□□□□□ -1.5
VPS13A-208ENST00000423463 EIF2AK3Q9NZJ5 1116 aaKnown RBP5.7□□□□□ -1.5
VPS13A-208ENST00000423463 SLAIN1Q8ND83 568 aa5.69□□□□□ -1.5
VPS13A-208ENST00000423463 C2orf72A6NCS6 295 aa5.69□□□□□ -1.5
VPS13A-208ENST00000423463 MAMSTRQ6ZN01 415 aa5.67□□□□□ -1.5
VPS13A-208ENST00000423463 TMC2Q8TDI7 906 aa5.67□□□□□ -1.5
VPS13A-208ENST00000423463 LARP6Q9BRS8 491 aaKnown RBP5.67□□□□□ -1.5
VPS13A-208ENST00000423463 CRISPLD2Q9H0B8 497 aa5.67□□□□□ -1.5
VPS13A-208ENST00000423463 KIF3CO14782 793 aa5.66□□□□□ -1.5
VPS13A-208ENST00000423463 DSG2Q14126 1118 aa5.66□□□□□ -1.5
VPS13A-208ENST00000423463 GPHNQ9NQX3 736 aaPredicted RBP5.65□□□□□ -1.5
VPS13A-208ENST00000423463 KDM2AQ9Y2K7 1162 aa5.65□□□□□ -1.5
VPS13A-208ENST00000423463 SLC24A1O60721 1099 aa5.63□□□□□ -1.51
VPS13A-208ENST00000423463 DDX27Q96GQ7 796 aaKnown RBP5.63□□□□□ -1.51
VPS13A-208ENST00000423463 PDE4AP27815 886 aa5.63□□□□□ -1.51
VPS13A-208ENST00000423463 PPP1R15BQ5SWA1 713 aa5.62□□□□□ -1.51
VPS13A-208ENST00000423463 PLPP6Q8IY26 295 aa5.62□□□□□ -1.51
VPS13A-208ENST00000423463 FOXK1P85037 733 aa5.61□□□□□ -1.51
VPS13A-208ENST00000423463 MFSD10Q14728 455 aa5.6□□□□□ -1.51
VPS13A-208ENST00000423463 UPF1Q92900 1129 aaKnown RBP eCLIP5.6□□□□□ -1.51
VPS13A-208ENST00000423463 HOXB3P14651 431 aaPredicted RBP5.59□□□□□ -1.51
VPS13A-208ENST00000423463 WDR70Q9NW82 654 aa5.59□□□□□ -1.51
VPS13A-208ENST00000423463 EMILIN3Q9NT22 766 aa5.58□□□□□ -1.52
VPS13A-208ENST00000423463 VSIG10Q8N0Z9 540 aa5.57□□□□□ -1.52
VPS13A-208ENST00000423463 KCNV2Q8TDN2 545 aa5.57□□□□□ -1.52
VPS13A-208ENST00000423463 KHSRPQ92945 711 aaKnown RBP eCLIP5.57□□□□□ -1.521e-6■■■■□ 24.1
VPS13A-208ENST00000423463 E2F4Q16254 413 aa5.56□□□□□ -1.52
VPS13A-208ENST00000423463 ZNF710Q8N1W2 664 aa5.55□□□□□ -1.52
VPS13A-208ENST00000423463 FAM163AQ96GL9 167 aaPredicted RBP5.55□□□□□ -1.52
VPS13A-208ENST00000423463 DPYSL4O14531 572 aa5.54□□□□□ -1.52
VPS13A-208ENST00000423463 DOK7Q18PE1 504 aa5.54□□□□□ -1.52
VPS13A-208ENST00000423463 ST18O60284 1047 aa5.54□□□□□ -1.52
VPS13A-208ENST00000423463 ARSIQ5FYB1 569 aa5.54□□□□□ -1.52
VPS13A-208ENST00000423463 LCE2DQ5TA82 110 aaPredicted RBP5.54□□□□□ -1.52
VPS13A-208ENST00000423463 MARVELD3Q96A59 401 aa5.54□□□□□ -1.52
VPS13A-208ENST00000423463 CAMK2BQ13554 666 aa5.54□□□□□ -1.52
VPS13A-208ENST00000423463 NUDT7P0C024 238 aa5.53□□□□□ -1.52
VPS13A-208ENST00000423463 SNPHO15079 494 aa5.53□□□□□ -1.52
VPS13A-208ENST00000423463 PCDHGA4Q9Y5G9 962 aa5.53□□□□□ -1.52
VPS13A-208ENST00000423463 GPR153Q6NV75 609 aa5.52□□□□□ -1.53
VPS13A-208ENST00000423463 OXER1Q8TDS5 423 aa5.52□□□□□ -1.53
VPS13A-208ENST00000423463 PTCD2Q8WV60 388 aaKnown RBP5.52□□□□□ -1.53
VPS13A-208ENST00000423463 RIMBP2O15034 1052 aa5.52□□□□□ -1.53
VPS13A-208ENST00000423463 SLC34A2O95436 690 aa5.52□□□□□ -1.53
VPS13A-208ENST00000423463 MAP3K9P80192 1104 aa5.51□□□□□ -1.53
VPS13A-208ENST00000423463 P3H3Q8IVL6 736 aa5.49□□□□□ -1.53
VPS13A-208ENST00000423463 EVI5O60447 810 aa5.48□□□□□ -1.53
VPS13A-208ENST00000423463 HOXB1P14653 301 aaPredicted RBP5.48□□□□□ -1.53
VPS13A-208ENST00000423463 EMP3P54852 163 aa5.47□□□□□ -1.53
VPS13A-208ENST00000423463 ZSWIM6Q9HCJ5 1215 aa5.47□□□□□ -1.53
VPS13A-208ENST00000423463 SEMA3EO15041 775 aa5.46□□□□□ -1.53
VPS13A-208ENST00000423463 TBC1D12O60347 775 aa5.46□□□□□ -1.53
VPS13A-208ENST00000423463 PDIA6Q15084 440 aa5.46□□□□□ -1.53
VPS13A-208ENST00000423463 DDX12PQ92771 950 aa5.46□□□□□ -1.53
VPS13A-208ENST00000423463 ARHGEF1Q92888 912 aaKnown RBP5.46□□□□□ -1.53
VPS13A-208ENST00000423463 LHX6Q9UPM6 363 aa5.46□□□□□ -1.53
VPS13A-208ENST00000423463 KDM4FA0A1W2PPD8 638 aa5.46□□□□□ -1.54
VPS13A-208ENST00000423463 FAM205CA6NFA0 338 aa5.46□□□□□ -1.54
VPS13A-208ENST00000423463 MLLT3P42568 568 aaPredicted RBP5.45□□□□□ -1.54
VPS13A-208ENST00000423463 VARS2Q5ST30 1063 aaKnown RBP5.45□□□□□ -1.54
VPS13A-208ENST00000423463 GRXCR2A6NFK2 248 aa5.44□□□□□ -1.54
VPS13A-208ENST00000423463 ARIH1Q9Y4X5 557 aaPredicted RBP5.44□□□□□ -1.54
VPS13A-208ENST00000423463 ERBB3P21860 1342 aa5.44□□□□□ -1.54
VPS13A-208ENST00000423463 POTEB3A0JP26 581 aa5.44□□□□□ -1.54
VPS13A-208ENST00000423463 POTEBQ6S5H4 581 aa5.44□□□□□ -1.54
VPS13A-208ENST00000423463 ZNF316A6NFI3 1004 aaPredicted RBP5.43□□□□□ -1.54
VPS13A-208ENST00000423463 ZNF454Q8N9F8 522 aa5.43□□□□□ -1.54
VPS13A-208ENST00000423463 HS3ST6Q96QI5 342 aa5.43□□□□□ -1.54
VPS13A-208ENST00000423463 POTEMA6NI47 508 aa5.42□□□□□ -1.54
VPS13A-208ENST00000423463 POTEGQ6S5H5 508 aa5.42□□□□□ -1.54
VPS13A-208ENST00000423463 ANO8Q9HCE9 1232 aaPredicted RBP5.41□□□□□ -1.54
VPS13A-208ENST00000423463 PCDHGA10Q9Y5H3 936 aa5.41□□□□□ -1.54
VPS13A-208ENST00000423463 NBR1Q14596 966 aa5.41□□□□□ -1.54
VPS13A-208ENST00000423463 SPDYE16A6NNV3 312 aaPredicted RBP5.4□□□□□ -1.54
VPS13A-208ENST00000423463 PRIM1P49642 420 aaKnown RBP5.4□□□□□ -1.55
VPS13A-208ENST00000423463 RBM33Q96EV2 1170 aaKnown RBP5.4□□□□□ -1.55
VPS13A-208ENST00000423463 FOSBP53539 338 aa5.39□□□□□ -1.55
VPS13A-208ENST00000423463 JPH4Q96JJ6 628 aa5.39□□□□□ -1.55
VPS13A-208ENST00000423463 AXIN2Q9Y2T1 843 aa5.39□□□□□ -1.55
VPS13A-208ENST00000423463 ADAM33Q9BZ11 813 aa5.39□□□□□ -1.55
VPS13A-208ENST00000423463 TESPA1A2RU30 521 aaPredicted RBP5.38□□□□□ -1.55
VPS13A-208ENST00000423463 PTGER2P43116 358 aa5.38□□□□□ -1.55
VPS13A-208ENST00000423463 TSR1Q2NL82 804 aaKnown RBP5.38□□□□□ -1.55
VPS13A-208ENST00000423463 PPP4R3BQ5MIZ7 849 aa5.38□□□□□ -1.55
VPS13A-208ENST00000423463 POTEEQ6S8J3 1075 aa5.38□□□□□ -1.55
VPS13A-208ENST00000423463 MAP3K7O43318 606 aa5.37□□□□□ -1.55
VPS13A-208ENST00000423463 OSBPP22059 807 aa5.37□□□□□ -1.55
VPS13A-208ENST00000423463 PHF14O94880 888 aa5.37□□□□□ -1.55
VPS13A-208ENST00000423463 PSEN2P49810 448 aa5.37□□□□□ -1.55
VPS13A-208ENST00000423463 RBM26Q5T8P6 1007 aaKnown RBP5.37□□□□□ -1.55
VPS13A-208ENST00000423463 ZDHHC16Q969W1 377 aa5.37□□□□□ -1.55
VPS13A-208ENST00000423463 KCNK17Q96T54 332 aa5.36□□□□□ -1.55
VPS13A-208ENST00000423463 CDHR5Q9HBB8 845 aa5.36□□□□□ -1.55
VPS13A-208ENST00000423463 EN1Q05925 392 aaPredicted RBP5.35□□□□□ -1.55
VPS13A-208ENST00000423463 TYW1BQ6NUM6 668 aa5.35□□□□□ -1.55
VPS13A-208ENST00000423463 PSDA5PKW4 1024 aaPredicted RBP5.35□□□□□ -1.55
VPS13A-208ENST00000423463 BCANQ96GW7 911 aa5.35□□□□□ -1.55
VPS13A-208ENST00000423463 CDAN1Q8IWY9 1227 aa5.34□□□□□ -1.55
VPS13A-208ENST00000423463 ZNF687Q8N1G0 1237 aa5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms