RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 ZFYVE16Q7Z3T8 1539 aa18.87■□□□□ 0.61
SQSTM1-203ENST00000422245 CASKIN1Q8WXD9 1431 aa18.87■□□□□ 0.61
SQSTM1-203ENST00000422245 PCF11O94913 1555 aaKnown RBP18.86■□□□□ 0.61
SQSTM1-203ENST00000422245 CCDC18Q5T9S5 1454 aa18.86■□□□□ 0.61
SQSTM1-203ENST00000422245 SCAPERQ9BY12 1400 aa18.86■□□□□ 0.61
SQSTM1-203ENST00000422245 MADDQ8WXG6 1647 aa18.85■□□□□ 0.61
SQSTM1-203ENST00000422245 EFCAB2Q5VUJ9 269 aa18.85■□□□□ 0.61
SQSTM1-203ENST00000422245 YEATS2Q9ULM3 1422 aa18.83■□□□□ 0.6
SQSTM1-203ENST00000422245 FYCO1Q9BQS8 1478 aa18.82■□□□□ 0.6
SQSTM1-203ENST00000422245 ARHGAP5Q13017 1502 aa18.81■□□□□ 0.6
SQSTM1-203ENST00000422245 RIMS1Q86UR5 1692 aaKnown RBP18.79■□□□□ 0.6
SQSTM1-203ENST00000422245 ZNF518AQ6AHZ1 1483 aa18.78■□□□□ 0.6
SQSTM1-203ENST00000422245 PREX2Q70Z35 1606 aa18.78■□□□□ 0.6
SQSTM1-203ENST00000422245 SIGLEC1Q9BZZ2 1709 aa18.77■□□□□ 0.59
SQSTM1-203ENST00000422245 KDM5CP41229 1560 aa18.76■□□□□ 0.59
SQSTM1-203ENST00000422245 CDC42BPBQ9Y5S2 1711 aa18.76■□□□□ 0.59
SQSTM1-203ENST00000422245 C9orf84Q5VXU9 1444 aa18.75■□□□□ 0.59
SQSTM1-203ENST00000422245 ATP10AO60312 1499 aa18.74■□□□□ 0.59
SQSTM1-203ENST00000422245 FER1L4A9Z1Z3 1794 aa18.72■□□□□ 0.59
SQSTM1-203ENST00000422245 ABCC1P33527 1531 aa18.7■□□□□ 0.58
SQSTM1-203ENST00000422245 CDC42BPAQ5VT25 1732 aa18.7■□□□□ 0.58
SQSTM1-203ENST00000422245 ITSN2Q9NZM3 1697 aa18.69■□□□□ 0.58
SQSTM1-203ENST00000422245 AFAP1Q8N556 730 aa18.68■□□□□ 0.58
SQSTM1-203ENST00000422245 LMTK3Q96Q04 1460 aa18.68■□□□□ 0.58
SQSTM1-203ENST00000422245 ARHGEF12Q9NZN5 1544 aa18.68■□□□□ 0.58
SQSTM1-203ENST00000422245 REREQ9P2R6 1566 aa18.68■□□□□ 0.58
SQSTM1-203ENST00000422245 MLH3Q9UHC1 1453 aa18.67■□□□□ 0.58
SQSTM1-203ENST00000422245 DIP2CQ9Y2E4 1556 aa18.67■□□□□ 0.58
SQSTM1-203ENST00000422245 MLECQ14165 292 aa18.66■□□□□ 0.58
SQSTM1-203ENST00000422245 TRAPPC8Q9Y2L5 1435 aa18.65■□□□□ 0.58
SQSTM1-203ENST00000422245 ABCA6Q8N139 1617 aa18.64■□□□□ 0.57
SQSTM1-203ENST00000422245 MYT1LQ9UL68 1186 aa18.63■□□□□ 0.57
SQSTM1-203ENST00000422245 ILDR1Q86SU0 546 aaPredicted RBP18.62■□□□□ 0.57
SQSTM1-203ENST00000422245 CEP162Q5TB80 1403 aa18.62■□□□□ 0.57
SQSTM1-203ENST00000422245 GPATCH8Q9UKJ3 1502 aaKnown RBP18.61■□□□□ 0.57
SQSTM1-203ENST00000422245 MTUS2Q5JR59 1369 aa18.61■□□□□ 0.57
SQSTM1-203ENST00000422245 SAMD9LQ8IVG5 1584 aa18.6■□□□□ 0.57
SQSTM1-203ENST00000422245 AGLP35573 1532 aa18.59■□□□□ 0.57
SQSTM1-203ENST00000422245 KIDINS220Q9ULH0 1771 aa18.59■□□□□ 0.57
SQSTM1-203ENST00000422245 CCNB3Q8WWL7 1395 aa18.58■□□□□ 0.57
SQSTM1-203ENST00000422245 PLPPR3Q6T4P5 718 aa18.58■□□□□ 0.56
SQSTM1-203ENST00000422245 SYCP2Q9BX26 1530 aa18.58■□□□□ 0.56
SQSTM1-203ENST00000422245 PLEKHH2Q8IVE3 1493 aa18.58■□□□□ 0.56
SQSTM1-203ENST00000422245 EHBP1L1Q8N3D4 1523 aa18.57■□□□□ 0.56
SQSTM1-203ENST00000422245 KIAA1107Q9UPP5 1409 aa18.57■□□□□ 0.56
SQSTM1-203ENST00000422245 CFDP1Q9UEE9 299 aaPredicted RBP18.56■□□□□ 0.56
SQSTM1-203ENST00000422245 ZNF777Q9ULD5 760 aaPredicted RBP18.56■□□□□ 0.56
SQSTM1-203ENST00000422245 PREX1Q8TCU6 1659 aa18.56■□□□□ 0.56
SQSTM1-203ENST00000422245 SPAG9O60271 1321 aaKnown RBP18.52■□□□□ 0.56
SQSTM1-203ENST00000422245 HSPA2P54652 639 aa18.52■□□□□ 0.56
SQSTM1-203ENST00000422245 TIAM1Q13009 1591 aa18.51■□□□□ 0.55
SQSTM1-203ENST00000422245 INO80Q9ULG1 1556 aaPredicted RBP18.51■□□□□ 0.55
SQSTM1-203ENST00000422245 ATP7AQ04656 1500 aa18.51■□□□□ 0.55
SQSTM1-203ENST00000422245 CNTLNQ9NXG0 1405 aa18.49■□□□□ 0.55
SQSTM1-203ENST00000422245 HNRNPMP52272 730 aaKnown RBP eCLIP18.49■□□□□ 0.554e-8■■■■□ 21.3
SQSTM1-203ENST00000422245 C3P01024 1663 aa18.49■□□□□ 0.55
SQSTM1-203ENST00000422245 SETD1BQ9UPS6 1966 aaKnown RBP18.49■□□□□ 0.55
SQSTM1-203ENST00000422245 CEBPAP49715 358 aaPredicted RBP18.48■□□□□ 0.55
SQSTM1-203ENST00000422245 ESF1Q9H501 851 aaKnown RBP18.48■□□□□ 0.55
SQSTM1-203ENST00000422245 UHRF1BP1Q6BDS2 1440 aa18.47■□□□□ 0.55
SQSTM1-203ENST00000422245 PLXNC1O60486 1568 aa18.46■□□□□ 0.55
SQSTM1-203ENST00000422245 MROH2AA6NES4 1674 aa18.45■□□□□ 0.54
SQSTM1-203ENST00000422245 SUPT6HQ7KZ85 1726 aaKnown RBP18.45■□□□□ 0.54
SQSTM1-203ENST00000422245 VPS8Q8N3P4 1428 aa18.44■□□□□ 0.54
SQSTM1-203ENST00000422245 FBXO41Q8TF61 875 aa18.43■□□□□ 0.54
SQSTM1-203ENST00000422245 A2MP01023 1474 aa18.43■□□□□ 0.54
SQSTM1-203ENST00000422245 NCOA2Q15596 1464 aa18.43■□□□□ 0.54
SQSTM1-203ENST00000422245 MBD5Q9P267 1494 aa18.43■□□□□ 0.54
SQSTM1-203ENST00000422245 ADGBQ8N7X0 1667 aa18.43■□□□□ 0.54
SQSTM1-203ENST00000422245 ZNF644Q9H582 1327 aaPredicted RBP18.41■□□□□ 0.54
SQSTM1-203ENST00000422245 RTEL1-TNFRSF6BF6WH68 1400 aa18.4■□□□□ 0.54
SQSTM1-203ENST00000422245 NPATQ14207 1427 aa18.39■□□□□ 0.53
SQSTM1-203ENST00000422245 CCDC141Q6ZP82 1450 aa18.38■□□□□ 0.53
SQSTM1-203ENST00000422245 CAMSAP2Q08AD1 1489 aa18.37■□□□□ 0.53
SQSTM1-203ENST00000422245 STRCQ7RTU9 1775 aa18.37■□□□□ 0.53
SQSTM1-203ENST00000422245 LOC105371045A0A1W2PR82 267 aa18.36■□□□□ 0.53
SQSTM1-203ENST00000422245 CLTCQ00610 1675 aaKnown RBP18.36■□□□□ 0.53
SQSTM1-203ENST00000422245 LRRC9Q6ZRR7 1453 aa18.35■□□□□ 0.53
SQSTM1-203ENST00000422245 DMRT2Q9Y5R5 561 aa18.35■□□□□ 0.53
SQSTM1-203ENST00000422245 ZMYM3Q14202 1370 aa18.34■□□□□ 0.53
SQSTM1-203ENST00000422245 RSPH4AQ5TD94 716 aa18.34■□□□□ 0.53
SQSTM1-203ENST00000422245 MAP3K1Q13233 1512 aa18.33■□□□□ 0.53
SQSTM1-203ENST00000422245 PPP6R1Q9UPN7 881 aa18.33■□□□□ 0.52
SQSTM1-203ENST00000422245 ARHGEF5Q12774 1597 aa18.33■□□□□ 0.52
SQSTM1-203ENST00000422245 DHX29Q7Z478 1369 aaKnown RBP18.32■□□□□ 0.52
SQSTM1-203ENST00000422245 GGT6Q6P531 493 aa18.31■□□□□ 0.52
SQSTM1-203ENST00000422245 FAM135AQ9P2D6 1515 aa18.29■□□□□ 0.52
SQSTM1-203ENST00000422245 ZNF142P52746 1687 aaPredicted RBP18.29■□□□□ 0.52
SQSTM1-203ENST00000422245 MYO3AQ8NEV4 1616 aa18.29■□□□□ 0.52
SQSTM1-203ENST00000422245 PTPRTO14522 1441 aa18.29■□□□□ 0.52
SQSTM1-203ENST00000422245 NCOA1Q15788 1441 aa18.29■□□□□ 0.52
SQSTM1-203ENST00000422245 CERKQ8TCT0 537 aa18.28■□□□□ 0.52
SQSTM1-203ENST00000422245 PTPRKQ15262 1439 aa18.28■□□□□ 0.52
SQSTM1-203ENST00000422245 MYOM3Q5VTT5 1437 aa18.25■□□□□ 0.51
SQSTM1-203ENST00000422245 MIA2Q96PC5 1412 aa18.25■□□□□ 0.51
SQSTM1-203ENST00000422245 CAMSAP1Q5T5Y3 1602 aa18.25■□□□□ 0.51
SQSTM1-203ENST00000422245 CEP170BQ9Y4F5 1589 aaPredicted RBP18.25■□□□□ 0.51
SQSTM1-203ENST00000422245 TSPY4P0CV99 314 aa18.24■□□□□ 0.51
SQSTM1-203ENST00000422245 TSPY10P0CW01 314 aa18.24■□□□□ 0.51
SQSTM1-203ENST00000422245 MAST1Q9Y2H9 1570 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 6.9 ms