RNA–Protein interactions for RNA: ENST00000420813.5

MSH6-203, Transcript of mutS homolog 6, humanhuman

TSL 4

Gene MSH6, Length 491 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-203ENST00000420813 POGZQ7Z3K3 1410 aa28.43■■■□□ 2.14
MSH6-203ENST00000420813 ARID4BQ4LE39 1312 aaPredicted RBP28.43■■■□□ 2.14
MSH6-203ENST00000420813 SCAPERQ9BY12 1400 aa28.42■■■□□ 2.14
MSH6-203ENST00000420813 PCF11O94913 1555 aaKnown RBP28.41■■■□□ 2.14
MSH6-203ENST00000420813 CASKIN1Q8WXD9 1431 aa28.4■■■□□ 2.14
MSH6-203ENST00000420813 CCDC18Q5T9S5 1454 aa28.4■■■□□ 2.14
MSH6-203ENST00000420813 EFCAB2Q5VUJ9 269 aa28.39■■■□□ 2.14
MSH6-203ENST00000420813 YEATS2Q9ULM3 1422 aa28.37■■■□□ 2.13
MSH6-203ENST00000420813 SIGLEC1Q9BZZ2 1709 aa28.36■■■□□ 2.13
MSH6-203ENST00000420813 RIMS1Q86UR5 1692 aaKnown RBP28.35■■■□□ 2.13
MSH6-203ENST00000420813 ARHGAP5Q13017 1502 aa28.34■■■□□ 2.13
MSH6-203ENST00000420813 CDC42BPBQ9Y5S2 1711 aa28.33■■■□□ 2.13
MSH6-203ENST00000420813 FYCO1Q9BQS8 1478 aa28.32■■■□□ 2.12
MSH6-203ENST00000420813 PREX2Q70Z35 1606 aa28.29■■■□□ 2.12
MSH6-203ENST00000420813 ZNF518AQ6AHZ1 1483 aa28.29■■■□□ 2.12
MSH6-203ENST00000420813 KDM5CP41229 1560 aa28.28■■■□□ 2.12
MSH6-203ENST00000420813 ATP10AO60312 1499 aa28.26■■■□□ 2.11
MSH6-203ENST00000420813 FER1L4A9Z1Z3 1794 aa28.25■■■□□ 2.11
MSH6-203ENST00000420813 C9orf84Q5VXU9 1444 aa28.24■■■□□ 2.11
MSH6-203ENST00000420813 CDC42BPAQ5VT25 1732 aa28.23■■■□□ 2.11
MSH6-203ENST00000420813 ABCC1P33527 1531 aa28.19■■■□□ 2.1
MSH6-203ENST00000420813 LMTK3Q96Q04 1460 aa28.19■■■□□ 2.1
MSH6-203ENST00000420813 ITSN2Q9NZM3 1697 aa28.19■■■□□ 2.1
MSH6-203ENST00000420813 ARHGEF12Q9NZN5 1544 aa28.18■■■□□ 2.1
MSH6-203ENST00000420813 ILDR1Q86SU0 546 aaPredicted RBP28.16■■■□□ 2.1
MSH6-203ENST00000420813 AFAP1Q8N556 730 aa28.16■■■□□ 2.1
MSH6-203ENST00000420813 REREQ9P2R6 1566 aa28.16■■■□□ 2.1
MSH6-203ENST00000420813 DIP2CQ9Y2E4 1556 aa28.15■■■□□ 2.1
MSH6-203ENST00000420813 MLH3Q9UHC1 1453 aa28.15■■■□□ 2.1
MSH6-203ENST00000420813 MLECQ14165 292 aa28.13■■■□□ 2.09
MSH6-203ENST00000420813 ABCA6Q8N139 1617 aa28.11■■■□□ 2.09
MSH6-203ENST00000420813 TRAPPC8Q9Y2L5 1435 aa28.09■■■□□ 2.09
MSH6-203ENST00000420813 MYT1LQ9UL68 1186 aa28.06■■■□□ 2.08
MSH6-203ENST00000420813 KIDINS220Q9ULH0 1771 aa28.06■■■□□ 2.08
MSH6-203ENST00000420813 SAMD9LQ8IVG5 1584 aa28.05■■■□□ 2.08
MSH6-203ENST00000420813 GPATCH8Q9UKJ3 1502 aaKnown RBP28.05■■■□□ 2.08
MSH6-203ENST00000420813 AGLP35573 1532 aa28.03■■■□□ 2.08
MSH6-203ENST00000420813 PLPPR3Q6T4P5 718 aa28.02■■■□□ 2.08
MSH6-203ENST00000420813 PREX1Q8TCU6 1659 aa28■■■□□ 2.07
MSH6-203ENST00000420813 SYCP2Q9BX26 1530 aa27.99■■■□□ 2.07
MSH6-203ENST00000420813 SETD1BQ9UPS6 1966 aaKnown RBP27.99■■■□□ 2.07
MSH6-203ENST00000420813 MTUS2Q5JR59 1369 aa27.99■■■□□ 2.07
MSH6-203ENST00000420813 CEP162Q5TB80 1403 aa27.98■■■□□ 2.07
MSH6-203ENST00000420813 PLEKHH2Q8IVE3 1493 aa27.96■■■□□ 2.07
MSH6-203ENST00000420813 KIAA1107Q9UPP5 1409 aa27.95■■■□□ 2.07
MSH6-203ENST00000420813 ZNF777Q9ULD5 760 aaPredicted RBP27.95■■■□□ 2.06
MSH6-203ENST00000420813 EHBP1L1Q8N3D4 1523 aa27.95■■■□□ 2.06
MSH6-203ENST00000420813 CCNB3Q8WWL7 1395 aa27.95■■■□□ 2.06
MSH6-203ENST00000420813 HSPA2P54652 639 aa27.94■■■□□ 2.06
MSH6-203ENST00000420813 CFDP1Q9UEE9 299 aaPredicted RBP27.92■■■□□ 2.06
MSH6-203ENST00000420813 C3P01024 1663 aa27.91■■■□□ 2.06
MSH6-203ENST00000420813 TIAM1Q13009 1591 aa27.9■■■□□ 2.06
MSH6-203ENST00000420813 INO80Q9ULG1 1556 aaPredicted RBP27.9■■■□□ 2.06
MSH6-203ENST00000420813 CEBPAP49715 358 aaPredicted RBP27.89■■■□□ 2.06
MSH6-203ENST00000420813 SPAG9O60271 1321 aaKnown RBP27.89■■■□□ 2.05
MSH6-203ENST00000420813 ATP7AQ04656 1500 aa27.88■■■□□ 2.05
MSH6-203ENST00000420813 HNRNPMP52272 730 aaKnown RBP eCLIP27.87■■■□□ 2.05
MSH6-203ENST00000420813 CNTLNQ9NXG0 1405 aa27.84■■■□□ 2.05
MSH6-203ENST00000420813 SUPT6HQ7KZ85 1726 aaKnown RBP27.84■■■□□ 2.05
MSH6-203ENST00000420813 FBXO41Q8TF61 875 aa27.84■■■□□ 2.05
MSH6-203ENST00000420813 ESF1Q9H501 851 aaKnown RBP27.83■■■□□ 2.05
MSH6-203ENST00000420813 MROH2AA6NES4 1674 aa27.83■■■□□ 2.05
MSH6-203ENST00000420813 UHRF1BP1Q6BDS2 1440 aa27.83■■■□□ 2.05
MSH6-203ENST00000420813 PLXNC1O60486 1568 aa27.82■■■□□ 2.04
MSH6-203ENST00000420813 ADGBQ8N7X0 1667 aa27.8■■■□□ 2.04
MSH6-203ENST00000420813 A2MP01023 1474 aa27.77■■■□□ 2.04
MSH6-203ENST00000420813 STRCQ7RTU9 1775 aa27.77■■■□□ 2.04
MSH6-203ENST00000420813 MBD5Q9P267 1494 aa27.76■■■□□ 2.04
MSH6-203ENST00000420813 ZNF644Q9H582 1327 aaPredicted RBP27.73■■■□□ 2.03
MSH6-203ENST00000420813 NCOA2Q15596 1464 aa27.73■■■□□ 2.03
MSH6-203ENST00000420813 RTEL1-TNFRSF6BF6WH68 1400 aa27.71■■■□□ 2.03
MSH6-203ENST00000420813 VPS8Q8N3P4 1428 aa27.71■■■□□ 2.03
MSH6-203ENST00000420813 CLTCQ00610 1675 aaKnown RBP27.71■■■□□ 2.03
MSH6-203ENST00000420813 NPATQ14207 1427 aa27.69■■■□□ 2.02
MSH6-203ENST00000420813 DMRT2Q9Y5R5 561 aa27.67■■■□□ 2.02
MSH6-203ENST00000420813 CAMSAP2Q08AD1 1489 aa27.66■■■□□ 2.02
MSH6-203ENST00000420813 ZMYM3Q14202 1370 aa27.66■■■□□ 2.02
MSH6-203ENST00000420813 CCDC141Q6ZP82 1450 aa27.65■■■□□ 2.02
MSH6-203ENST00000420813 LOC105371045A0A1W2PR82 267 aa27.64■■■□□ 2.02
MSH6-203ENST00000420813 LRRC9Q6ZRR7 1453 aa27.63■■■□□ 2.01
MSH6-203ENST00000420813 RSPH4AQ5TD94 716 aa27.62■■■□□ 2.01
MSH6-203ENST00000420813 PPP6R1Q9UPN7 881 aa27.62■■■□□ 2.01
MSH6-203ENST00000420813 MAP3K1Q13233 1512 aa27.62■■■□□ 2.01
MSH6-203ENST00000420813 CERKQ8TCT0 537 aa27.61■■■□□ 2.01
MSH6-203ENST00000420813 ARHGEF5Q12774 1597 aa27.6■■■□□ 2.01
MSH6-203ENST00000420813 PTPRTO14522 1441 aa27.59■■■□□ 2.01
MSH6-203ENST00000420813 GGT6Q6P531 493 aa27.59■■■□□ 2.01
MSH6-203ENST00000420813 DHX29Q7Z478 1369 aaKnown RBP27.59■■■□□ 2.01
MSH6-203ENST00000420813 ZNF142P52746 1687 aaPredicted RBP27.59■■■□□ 2.01
MSH6-203ENST00000420813 MYO3AQ8NEV4 1616 aa27.57■■■□□ 2
MSH6-203ENST00000420813 NCOA1Q15788 1441 aa27.57■■■□□ 2
MSH6-203ENST00000420813 PTPRKQ15262 1439 aa27.55■■■□□ 2
MSH6-203ENST00000420813 FAM135AQ9P2D6 1515 aa27.54■■■□□ 2
MSH6-203ENST00000420813 CAMSAP1Q5T5Y3 1602 aa27.53■■■□□ 2
MSH6-203ENST00000420813 CEP170BQ9Y4F5 1589 aaPredicted RBP27.5■■□□□ 1.99
MSH6-203ENST00000420813 MAST1Q9Y2H9 1570 aa27.48■■□□□ 1.99
MSH6-203ENST00000420813 KDM5DQ9BY66 1539 aa27.47■■□□□ 1.99
MSH6-203ENST00000420813 TSPY4P0CV99 314 aa27.47■■□□□ 1.99
MSH6-203ENST00000420813 TSPY10P0CW01 314 aa27.47■■□□□ 1.99
MSH6-203ENST00000420813 KIF3BO15066 747 aa27.46■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms