RNA–Protein interactions for RNA: ENST00000407422.7

SMARCB1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,643 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-204ENST00000407422 ARHGAP5Q13017 1502 aa31.18■■■□□ 2.58
SMARCB1-204ENST00000407422 ADAMTSL3P82987 1691 aa31.18■■■□□ 2.58
SMARCB1-204ENST00000407422 ARID4BQ4LE39 1312 aaPredicted RBP31.17■■■□□ 2.58
SMARCB1-204ENST00000407422 YEATS2Q9ULM3 1422 aa31.16■■■□□ 2.58
SMARCB1-204ENST00000407422 CDC42BPBQ9Y5S2 1711 aa31.16■■■□□ 2.58
SMARCB1-204ENST00000407422 BCORL1Q5H9F3 1711 aa31.15■■■□□ 2.58
SMARCB1-204ENST00000407422 ZFYVE16Q7Z3T8 1539 aa31.15■■■□□ 2.58
SMARCB1-204ENST00000407422 MAGI2Q86UL8 1455 aa31.12■■■□□ 2.57
SMARCB1-204ENST00000407422 SIGLEC1Q9BZZ2 1709 aa31.1■■■□□ 2.57
SMARCB1-204ENST00000407422 PREX2Q70Z35 1606 aa31.1■■■□□ 2.57
SMARCB1-204ENST00000407422 CEP162Q5TB80 1403 aa31.1■■■□□ 2.57
SMARCB1-204ENST00000407422 MADDQ8WXG6 1647 aa31.07■■■□□ 2.56
SMARCB1-204ENST00000407422 CDC42BPAQ5VT25 1732 aa31.07■■■□□ 2.56
SMARCB1-204ENST00000407422 HECW2Q9P2P5 1572 aa31.07■■■□□ 2.56
SMARCB1-204ENST00000407422 PTPRMP28827 1452 aa31.06■■■□□ 2.56
SMARCB1-204ENST00000407422 AFAP1Q8N556 730 aa31.04■■■□□ 2.56
SMARCB1-204ENST00000407422 ZNF518AQ6AHZ1 1483 aa31.04■■■□□ 2.56
SMARCB1-204ENST00000407422 LOC105371045A0A1W2PR82 267 aa31.02■■■□□ 2.56
SMARCB1-204ENST00000407422 KDM5CP41229 1560 aa31■■■□□ 2.55
SMARCB1-204ENST00000407422 ABCC1P33527 1531 aa30.98■■■□□ 2.55
SMARCB1-204ENST00000407422 ARHGEF12Q9NZN5 1544 aa30.98■■■□□ 2.55
SMARCB1-204ENST00000407422 ATP10AO60312 1499 aa30.97■■■□□ 2.55
SMARCB1-204ENST00000407422 RIMS1Q86UR5 1692 aaKnown RBP30.97■■■□□ 2.55
SMARCB1-204ENST00000407422 GPATCH8Q9UKJ3 1502 aaKnown RBP30.95■■■□□ 2.55
SMARCB1-204ENST00000407422 ITSN2Q9NZM3 1697 aa30.95■■■□□ 2.55
SMARCB1-204ENST00000407422 TRAPPC8Q9Y2L5 1435 aa30.95■■■□□ 2.54
SMARCB1-204ENST00000407422 MTUS2Q5JR59 1369 aa30.94■■■□□ 2.54
SMARCB1-204ENST00000407422 C9orf84Q5VXU9 1444 aa30.93■■■□□ 2.54
SMARCB1-204ENST00000407422 MLECQ14165 292 aa30.93■■■□□ 2.54
SMARCB1-204ENST00000407422 ZNF777Q9ULD5 760 aaPredicted RBP30.91■■■□□ 2.54
SMARCB1-204ENST00000407422 MYT1LQ9UL68 1186 aa30.91■■■□□ 2.54
SMARCB1-204ENST00000407422 SAMD9LQ8IVG5 1584 aa30.89■■■□□ 2.54
SMARCB1-204ENST00000407422 DIP2CQ9Y2E4 1556 aa30.88■■■□□ 2.53
SMARCB1-204ENST00000407422 MLH3Q9UHC1 1453 aa30.87■■■□□ 2.53
SMARCB1-204ENST00000407422 CCNB3Q8WWL7 1395 aa30.86■■■□□ 2.53
SMARCB1-204ENST00000407422 ABCA6Q8N139 1617 aa30.85■■■□□ 2.53
SMARCB1-204ENST00000407422 FER1L4A9Z1Z3 1794 aa30.85■■■□□ 2.53
SMARCB1-204ENST00000407422 EHBP1L1Q8N3D4 1523 aa30.84■■■□□ 2.53
SMARCB1-204ENST00000407422 SYCP2Q9BX26 1530 aa30.83■■■□□ 2.53
SMARCB1-204ENST00000407422 PLPPR3Q6T4P5 718 aa30.83■■■□□ 2.53
SMARCB1-204ENST00000407422 CFDP1Q9UEE9 299 aaPredicted RBP30.83■■■□□ 2.53
SMARCB1-204ENST00000407422 KIDINS220Q9ULH0 1771 aa30.81■■■□□ 2.52
SMARCB1-204ENST00000407422 HNRNPMP52272 730 aaKnown RBP eCLIP30.8■■■□□ 2.52
SMARCB1-204ENST00000407422 TIAM1Q13009 1591 aa30.79■■■□□ 2.52
SMARCB1-204ENST00000407422 REREQ9P2R6 1566 aa30.78■■■□□ 2.52
SMARCB1-204ENST00000407422 VPS8Q8N3P4 1428 aa30.75■■■□□ 2.51
SMARCB1-204ENST00000407422 KIAA1107Q9UPP5 1409 aa30.74■■■□□ 2.51
SMARCB1-204ENST00000407422 LMTK3Q96Q04 1460 aa30.73■■■□□ 2.51
SMARCB1-204ENST00000407422 PLEKHH2Q8IVE3 1493 aa30.72■■■□□ 2.51
SMARCB1-204ENST00000407422 ZNF644Q9H582 1327 aaPredicted RBP30.71■■■□□ 2.51
SMARCB1-204ENST00000407422 SPAG9O60271 1321 aaKnown RBP30.7■■■□□ 2.5
SMARCB1-204ENST00000407422 SUPT6HQ7KZ85 1726 aaKnown RBP30.68■■■□□ 2.5
SMARCB1-204ENST00000407422 AGLP35573 1532 aa30.68■■■□□ 2.5
SMARCB1-204ENST00000407422 NCOA2Q15596 1464 aa30.68■■■□□ 2.5
SMARCB1-204ENST00000407422 CEBPAP49715 358 aaPredicted RBP30.65■■■□□ 2.5
SMARCB1-204ENST00000407422 ATP7AQ04656 1500 aa30.65■■■□□ 2.5
SMARCB1-204ENST00000407422 INO80Q9ULG1 1556 aaPredicted RBP30.64■■■□□ 2.5
SMARCB1-204ENST00000407422 MBD5Q9P267 1494 aa30.62■■■□□ 2.49
SMARCB1-204ENST00000407422 LRRC9Q6ZRR7 1453 aa30.6■■■□□ 2.49
SMARCB1-204ENST00000407422 HSPA2P54652 639 aa30.59■■■□□ 2.49
SMARCB1-204ENST00000407422 KANK4Q5T7N3 995 aaPredicted RBP30.55■■■□□ 2.48
SMARCB1-204ENST00000407422 C3P01024 1663 aa30.54■■■□□ 2.48
SMARCB1-204ENST00000407422 CAMSAP2Q08AD1 1489 aa30.53■■■□□ 2.48
SMARCB1-204ENST00000407422 PLXNC1O60486 1568 aa30.53■■■□□ 2.48
SMARCB1-204ENST00000407422 A2MP01023 1474 aa30.53■■■□□ 2.48
SMARCB1-204ENST00000407422 MAP3K1Q13233 1512 aa30.52■■■□□ 2.48
SMARCB1-204ENST00000407422 PREX1Q8TCU6 1659 aa30.52■■■□□ 2.48
SMARCB1-204ENST00000407422 ESF1Q9H501 851 aaKnown RBP30.51■■■□□ 2.48
SMARCB1-204ENST00000407422 ADGBQ8N7X0 1667 aa30.49■■■□□ 2.47
SMARCB1-204ENST00000407422 SETD1BQ9UPS6 1966 aaKnown RBP30.48■■■□□ 2.47
SMARCB1-204ENST00000407422 ILDR1Q86SU0 546 aaPredicted RBP30.47■■■□□ 2.47
SMARCB1-204ENST00000407422 RTEL1-TNFRSF6BF6WH68 1400 aa30.46■■■□□ 2.47
SMARCB1-204ENST00000407422 CCDC141Q6ZP82 1450 aa30.46■■■□□ 2.47
SMARCB1-204ENST00000407422 CNTLNQ9NXG0 1405 aa30.45■■■□□ 2.46
SMARCB1-204ENST00000407422 MROH2AA6NES4 1674 aa30.4■■■□□ 2.46
SMARCB1-204ENST00000407422 UHRF1BP1Q6BDS2 1440 aa30.4■■■□□ 2.46
SMARCB1-204ENST00000407422 RSPH4AQ5TD94 716 aa30.4■■■□□ 2.46
SMARCB1-204ENST00000407422 GGT6Q6P531 493 aa30.4■■■□□ 2.46
SMARCB1-204ENST00000407422 CLTCQ00610 1675 aaKnown RBP30.39■■■□□ 2.46
SMARCB1-204ENST00000407422 ARHGEF5Q12774 1597 aa30.39■■■□□ 2.46
SMARCB1-204ENST00000407422 ZMYM3Q14202 1370 aa30.37■■■□□ 2.45
SMARCB1-204ENST00000407422 DHX29Q7Z478 1369 aaKnown RBP30.36■■■□□ 2.45
SMARCB1-204ENST00000407422 MYOM3Q5VTT5 1437 aa30.36■■■□□ 2.45
SMARCB1-204ENST00000407422 APLP2Q06481 763 aa30.34■■■□□ 2.45
SMARCB1-204ENST00000407422 MIA2Q96PC5 1412 aa30.31■■■□□ 2.44
SMARCB1-204ENST00000407422 TSPY4P0CV99 314 aa30.31■■■□□ 2.44
SMARCB1-204ENST00000407422 TSPY10P0CW01 314 aa30.31■■■□□ 2.44
SMARCB1-204ENST00000407422 STRCQ7RTU9 1775 aa30.29■■■□□ 2.44
SMARCB1-204ENST00000407422 KIF3BO15066 747 aa30.28■■■□□ 2.44
SMARCB1-204ENST00000407422 NPATQ14207 1427 aa30.28■■■□□ 2.44
SMARCB1-204ENST00000407422 PPP6R1Q9UPN7 881 aa30.26■■■□□ 2.44
SMARCB1-204ENST00000407422 MAST1Q9Y2H9 1570 aa30.24■■■□□ 2.43
SMARCB1-204ENST00000407422 PTPRKQ15262 1439 aa30.22■■■□□ 2.43
SMARCB1-204ENST00000407422 PTPN23Q9H3S7 1636 aa30.18■■■□□ 2.42
SMARCB1-204ENST00000407422 MYO3AQ8NEV4 1616 aa30.16■■■□□ 2.42
SMARCB1-204ENST00000407422 KDM5DQ9BY66 1539 aa30.14■■■□□ 2.42
SMARCB1-204ENST00000407422 FBXO41Q8TF61 875 aa30.14■■■□□ 2.41
SMARCB1-204ENST00000407422 FGD6Q6ZV73 1430 aa30.13■■■□□ 2.41
SMARCB1-204ENST00000407422 DMRT2Q9Y5R5 561 aa30.13■■■□□ 2.41
SMARCB1-204ENST00000407422 WASHC2CQ9Y4E1 1318 aa30.12■■■□□ 2.41
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms