RNA–Protein interactions for RNA: ENST00000406019.1

HMGB1P13-201, Transcript of high mobility group box 1 pseudogene 13, humanhuman

BASIC

Gene HMGB1P13, Length 642 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P13-201ENST00000406019 CFAP44Q96MT7 982 aa12.33□□□□□ -0.44
HMGB1P13-201ENST00000406019 NCKAP5LQ9HCH0 1330 aa12.33□□□□□ -0.44
HMGB1P13-201ENST00000406019 C2orf72A6NCS6 295 aa12.32□□□□□ -0.44
HMGB1P13-201ENST00000406019 CRISPLD2Q9H0B8 497 aa12.32□□□□□ -0.44
HMGB1P13-201ENST00000406019 LCE2DQ5TA82 110 aaPredicted RBP12.3□□□□□ -0.44
HMGB1P13-201ENST00000406019 PLCB2Q00722 1185 aa12.29□□□□□ -0.44
HMGB1P13-201ENST00000406019 HOXB3P14651 431 aaPredicted RBP12.28□□□□□ -0.44
HMGB1P13-201ENST00000406019 GPHNQ9NQX3 736 aaPredicted RBP12.27□□□□□ -0.45
HMGB1P13-201ENST00000406019 MFSD10Q14728 455 aa12.23□□□□□ -0.45
HMGB1P13-201ENST00000406019 SLC24A1O60721 1099 aa12.22□□□□□ -0.45
HMGB1P13-201ENST00000406019 FOXK1P85037 733 aa12.22□□□□□ -0.45
HMGB1P13-201ENST00000406019 TMC2Q8TDI7 906 aa12.22□□□□□ -0.45
HMGB1P13-201ENST00000406019 TSHZ2Q9NRE2 1034 aa12.22□□□□□ -0.45
HMGB1P13-201ENST00000406019 DSG2Q14126 1118 aa12.21□□□□□ -0.45
HMGB1P13-201ENST00000406019 PDE4AP27815 886 aa12.17□□□□□ -0.46
HMGB1P13-201ENST00000406019 SNPHO15079 494 aa12.16□□□□□ -0.46
HMGB1P13-201ENST00000406019 ST18O60284 1047 aa12.15□□□□□ -0.46
HMGB1P13-201ENST00000406019 PLPP6Q8IY26 295 aa12.15□□□□□ -0.46
HMGB1P13-201ENST00000406019 SLC34A2O95436 690 aa12.14□□□□□ -0.47
HMGB1P13-201ENST00000406019 PPP1R15BQ5SWA1 713 aa12.14□□□□□ -0.47
HMGB1P13-201ENST00000406019 LARP6Q9BRS8 491 aaKnown RBP12.14□□□□□ -0.47
HMGB1P13-201ENST00000406019 DOK7Q18PE1 504 aa12.11□□□□□ -0.47
HMGB1P13-201ENST00000406019 DDX27Q96GQ7 796 aaKnown RBP12.11□□□□□ -0.47
HMGB1P13-201ENST00000406019 FAM163AQ96GL9 167 aaPredicted RBP12.1□□□□□ -0.47
HMGB1P13-201ENST00000406019 GPR153Q6NV75 609 aa12.09□□□□□ -0.47
HMGB1P13-201ENST00000406019 CAMK2BQ13554 666 aa12.08□□□□□ -0.48
HMGB1P13-201ENST00000406019 ZSWIM6Q9HCJ5 1215 aa12.08□□□□□ -0.48
HMGB1P13-201ENST00000406019 PTCD2Q8WV60 388 aaKnown RBP12.07□□□□□ -0.48
HMGB1P13-201ENST00000406019 KDM4FA0A1W2PPD8 638 aa12.06□□□□□ -0.48
HMGB1P13-201ENST00000406019 HOXB1P14653 301 aaPredicted RBP12.06□□□□□ -0.48
HMGB1P13-201ENST00000406019 OXER1Q8TDS5 423 aa12.05□□□□□ -0.48
HMGB1P13-201ENST00000406019 EMILIN3Q9NT22 766 aa12.04□□□□□ -0.48
HMGB1P13-201ENST00000406019 PCDHGA4Q9Y5G9 962 aa12.03□□□□□ -0.48
HMGB1P13-201ENST00000406019 KHSRPQ92945 711 aaKnown RBP eCLIP12.02□□□□□ -0.49
HMGB1P13-201ENST00000406019 ARSIQ5FYB1 569 aa12.01□□□□□ -0.49
HMGB1P13-201ENST00000406019 RIMBP2O15034 1052 aa12□□□□□ -0.49
HMGB1P13-201ENST00000406019 ZNF710Q8N1W2 664 aa12□□□□□ -0.49
HMGB1P13-201ENST00000406019 HAP1P54257 671 aaPredicted RBP11.99□□□□□ -0.49
HMGB1P13-201ENST00000406019 MARVELD3Q96A59 401 aa11.98□□□□□ -0.49
HMGB1P13-201ENST00000406019 KDM2AQ9Y2K7 1162 aa11.98□□□□□ -0.49
HMGB1P13-201ENST00000406019 POTEB3A0JP26 581 aa11.96□□□□□ -0.49
HMGB1P13-201ENST00000406019 POTEBQ6S5H4 581 aa11.96□□□□□ -0.49
HMGB1P13-201ENST00000406019 POTEMA6NI47 508 aa11.95□□□□□ -0.5
HMGB1P13-201ENST00000406019 POTEGQ6S5H5 508 aa11.95□□□□□ -0.5
HMGB1P13-201ENST00000406019 UPF1Q92900 1129 aaKnown RBP eCLIP11.94□□□□□ -0.5
HMGB1P13-201ENST00000406019 ARIH1Q9Y4X5 557 aaPredicted RBP11.94□□□□□ -0.5
HMGB1P13-201ENST00000406019 NUDT7P0C024 238 aa11.93□□□□□ -0.5
HMGB1P13-201ENST00000406019 E2F4Q16254 413 aa11.93□□□□□ -0.5
HMGB1P13-201ENST00000406019 EMP3P54852 163 aa11.92□□□□□ -0.5
HMGB1P13-201ENST00000406019 ANO8Q9HCE9 1232 aaPredicted RBP11.89□□□□□ -0.51
HMGB1P13-201ENST00000406019 WDR70Q9NW82 654 aa11.89□□□□□ -0.51
HMGB1P13-201ENST00000406019 DPYSL4O14531 572 aa11.88□□□□□ -0.51
HMGB1P13-201ENST00000406019 KCNV2Q8TDN2 545 aa11.88□□□□□ -0.51
HMGB1P13-201ENST00000406019 ZNF316A6NFI3 1004 aaPredicted RBP11.87□□□□□ -0.51
HMGB1P13-201ENST00000406019 VSIG10Q8N0Z9 540 aa11.87□□□□□ -0.51
HMGB1P13-201ENST00000406019 HS3ST6Q96QI5 342 aa11.87□□□□□ -0.51
HMGB1P13-201ENST00000406019 TBC1D12O60347 775 aa11.86□□□□□ -0.51
HMGB1P13-201ENST00000406019 LHX6Q9UPM6 363 aa11.86□□□□□ -0.51
HMGB1P13-201ENST00000406019 FAM205CA6NFA0 338 aa11.85□□□□□ -0.51
HMGB1P13-201ENST00000406019 EVI5O60447 810 aa11.84□□□□□ -0.51
HMGB1P13-201ENST00000406019 PDIA6Q15084 440 aa11.84□□□□□ -0.51
HMGB1P13-201ENST00000406019 MAP3K9P80192 1104 aa11.82□□□□□ -0.52
HMGB1P13-201ENST00000406019 VARS2Q5ST30 1063 aaKnown RBP11.82□□□□□ -0.52
HMGB1P13-201ENST00000406019 ERBB3P21860 1342 aa11.81□□□□□ -0.52
HMGB1P13-201ENST00000406019 ARHGEF1Q92888 912 aaKnown RBP11.79□□□□□ -0.52
HMGB1P13-201ENST00000406019 PTGER2P43116 358 aa11.77□□□□□ -0.53
HMGB1P13-201ENST00000406019 FOSBP53539 338 aa11.77□□□□□ -0.53
HMGB1P13-201ENST00000406019 SPDYE16A6NNV3 312 aaPredicted RBP11.76□□□□□ -0.53
HMGB1P13-201ENST00000406019 POTEEQ6S8J3 1075 aa11.76□□□□□ -0.53
HMGB1P13-201ENST00000406019 KRTAP3-3Q9BYR6 98 aa11.76□□□□□ -0.53
HMGB1P13-201ENST00000406019 KRTAP3-2Q9BYR7 98 aa11.76□□□□□ -0.53
HMGB1P13-201ENST00000406019 P3H3Q8IVL6 736 aa11.75□□□□□ -0.53
HMGB1P13-201ENST00000406019 CDAN1Q8IWY9 1227 aa11.75□□□□□ -0.53
HMGB1P13-201ENST00000406019 ZNF687Q8N1G0 1237 aa11.75□□□□□ -0.53
HMGB1P13-201ENST00000406019 JPH4Q96JJ6 628 aa11.75□□□□□ -0.53
HMGB1P13-201ENST00000406019 PSDA5PKW4 1024 aaPredicted RBP11.73□□□□□ -0.53
HMGB1P13-201ENST00000406019 PCDHGA10Q9Y5H3 936 aa11.72□□□□□ -0.53
HMGB1P13-201ENST00000406019 PCDH10Q9P2E7 1040 aa11.71□□□□□ -0.53
HMGB1P13-201ENST00000406019 ZNF454Q8N9F8 522 aa11.69□□□□□ -0.54
HMGB1P13-201ENST00000406019 PHF14O94880 888 aa11.68□□□□□ -0.54
HMGB1P13-201ENST00000406019 PRIM1P49642 420 aaKnown RBP11.68□□□□□ -0.54
HMGB1P13-201ENST00000406019 PPP4R3BQ5MIZ7 849 aa11.68□□□□□ -0.54
HMGB1P13-201ENST00000406019 DDX12PQ92771 950 aa11.66□□□□□ -0.54
HMGB1P13-201ENST00000406019 ADAM33Q9BZ11 813 aa11.66□□□□□ -0.54
HMGB1P13-201ENST00000406019 BCL2L12Q9HB09 334 aa11.66□□□□□ -0.54
HMGB1P13-201ENST00000406019 PBX2P40425 430 aa11.64□□□□□ -0.55
HMGB1P13-201ENST00000406019 MLLT3P42568 568 aaPredicted RBP11.64□□□□□ -0.55
HMGB1P13-201ENST00000406019 TYW1BQ6NUM6 668 aa11.63□□□□□ -0.55
HMGB1P13-201ENST00000406019 ZDHHC16Q969W1 377 aa11.63□□□□□ -0.55
HMGB1P13-201ENST00000406019 EPAS1Q99814 870 aa11.63□□□□□ -0.55
HMGB1P13-201ENST00000406019 SEMA3EO15041 775 aa11.62□□□□□ -0.55
HMGB1P13-201ENST00000406019 OSBPP22059 807 aa11.62□□□□□ -0.55
HMGB1P13-201ENST00000406019 AXIN2Q9Y2T1 843 aa11.61□□□□□ -0.55
HMGB1P13-201ENST00000406019 TESPA1A2RU30 521 aaPredicted RBP11.6□□□□□ -0.55
HMGB1P13-201ENST00000406019 FBXW7Q969H0 707 aa11.6□□□□□ -0.55
HMGB1P13-201ENST00000406019 ARHGAP33O14559 1287 aa11.59□□□□□ -0.55
HMGB1P13-201ENST00000406019 PSEN2P49810 448 aa11.59□□□□□ -0.55
HMGB1P13-201ENST00000406019 EN1Q05925 392 aaPredicted RBP11.59□□□□□ -0.55
HMGB1P13-201ENST00000406019 NBR1Q14596 966 aa11.58□□□□□ -0.56
HMGB1P13-201ENST00000406019 DMRTA1Q5VZB9 504 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms