RNA–Protein interactions for RNA: ENST00000404484.8

TPM1-208, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-208ENST00000404484 PLCH2O75038 1416 aa31.78■■■□□ 2.68
TPM1-208ENST00000404484 FANCAO15360 1455 aa31.76■■■□□ 2.67
TPM1-208ENST00000404484 RAPGEF3O95398 923 aa31.74■■■□□ 2.67
TPM1-208ENST00000404484 MYOM3Q5VTT5 1437 aa31.73■■■□□ 2.67
TPM1-208ENST00000404484 AKNAQ7Z591 1439 aa31.73■■■□□ 2.67
TPM1-208ENST00000404484 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.71■■■□□ 2.67
TPM1-208ENST00000404484 FGD6Q6ZV73 1430 aa31.71■■■□□ 2.67
TPM1-208ENST00000404484 EFCAB2Q5VUJ9 269 aa31.69■■■□□ 2.66
TPM1-208ENST00000404484 MYO5CQ9NQX4 1742 aa31.64■■■□□ 2.66
TPM1-208ENST00000404484 CFAP74Q9C0B2 1584 aa31.61■■■□□ 2.65
TPM1-208ENST00000404484 MIA2Q96PC5 1412 aa31.61■■■□□ 2.65
TPM1-208ENST00000404484 DENND4BO75064 1496 aaPredicted RBP31.61■■■□□ 2.65
TPM1-208ENST00000404484 FAM50AQ14320 339 aaKnown RBP31.6■■■□□ 2.65
TPM1-208ENST00000404484 ARHGAP5Q13017 1502 aa31.59■■■□□ 2.65
TPM1-208ENST00000404484 SCAPERQ9BY12 1400 aa31.58■■■□□ 2.65
TPM1-208ENST00000404484 ADGRL1O94910 1474 aa31.57■■■□□ 2.64
TPM1-208ENST00000404484 PTPN23Q9H3S7 1636 aa31.56■■■□□ 2.64
TPM1-208ENST00000404484 FRMPD1Q5SYB0 1578 aa31.55■■■□□ 2.64
TPM1-208ENST00000404484 CDC42BPBQ9Y5S2 1711 aa31.54■■■□□ 2.64
TPM1-208ENST00000404484 ITSN2Q9NZM3 1697 aa31.54■■■□□ 2.64
TPM1-208ENST00000404484 GPATCH8Q9UKJ3 1502 aaKnown RBP31.53■■■□□ 2.64
TPM1-208ENST00000404484 TCOF1Q13428 1488 aaKnown RBP31.53■■■□□ 2.64
TPM1-208ENST00000404484 PREX2Q70Z35 1606 aa31.5■■■□□ 2.63
TPM1-208ENST00000404484 KDM4FA0A1W2PPD8 638 aa31.5■■■□□ 2.63
TPM1-208ENST00000404484 CDC42BPAQ5VT25 1732 aa31.49■■■□□ 2.63
TPM1-208ENST00000404484 RICTORQ6R327 1708 aa31.49■■■□□ 2.63
TPM1-208ENST00000404484 CFDP1Q9UEE9 299 aaPredicted RBP31.47■■■□□ 2.63
TPM1-208ENST00000404484 ZNF777Q9ULD5 760 aaPredicted RBP31.47■■■□□ 2.63
TPM1-208ENST00000404484 POGZQ7Z3K3 1410 aa31.46■■■□□ 2.63
TPM1-208ENST00000404484 AFAP1Q8N556 730 aa31.46■■■□□ 2.63
TPM1-208ENST00000404484 ITGAEP38570 1179 aa31.44■■■□□ 2.62
TPM1-208ENST00000404484 HRCP23327 699 aa31.43■■■□□ 2.62
TPM1-208ENST00000404484 AEBP2Q6ZN18 517 aaPredicted RBP31.43■■■□□ 2.62
TPM1-208ENST00000404484 ARHGEF12Q9NZN5 1544 aa31.4■■■□□ 2.62
TPM1-208ENST00000404484 ZMYM4Q5VZL5 1548 aa31.38■■■□□ 2.61
TPM1-208ENST00000404484 ABCC1P33527 1531 aa31.36■■■□□ 2.61
TPM1-208ENST00000404484 ZNF518AQ6AHZ1 1483 aa31.36■■■□□ 2.61
TPM1-208ENST00000404484 YEATS2Q9ULM3 1422 aa31.36■■■□□ 2.61
TPM1-208ENST00000404484 TRAPPC8Q9Y2L5 1435 aa31.36■■■□□ 2.61
TPM1-208ENST00000404484 HNRNPMP52272 730 aaKnown RBP eCLIP31.35■■■□□ 2.61
TPM1-208ENST00000404484 MAGI2Q86UL8 1455 aa31.35■■■□□ 2.61
TPM1-208ENST00000404484 ZNF644Q9H582 1327 aaPredicted RBP31.35■■■□□ 2.61
TPM1-208ENST00000404484 SAMD9LQ8IVG5 1584 aa31.34■■■□□ 2.61
TPM1-208ENST00000404484 ZEB1P37275 1124 aaPredicted RBP31.3■■■□□ 2.6
TPM1-208ENST00000404484 CCER1Q8TC90 406 aaPredicted RBP31.3■■■□□ 2.6
TPM1-208ENST00000404484 ZFYVE16Q7Z3T8 1539 aa31.3■■■□□ 2.6
TPM1-208ENST00000404484 ARHGEF40Q8TER5 1519 aa31.3■■■□□ 2.6
TPM1-208ENST00000404484 CAMSAP2Q08AD1 1489 aa31.29■■■□□ 2.6
TPM1-208ENST00000404484 KIAA1107Q9UPP5 1409 aa31.29■■■□□ 2.6
TPM1-208ENST00000404484 KDM5CP41229 1560 aa31.29■■■□□ 2.6
TPM1-208ENST00000404484 MYT1LQ9UL68 1186 aa31.28■■■□□ 2.6
TPM1-208ENST00000404484 ARID4BQ4LE39 1312 aaPredicted RBP31.28■■■□□ 2.6
TPM1-208ENST00000404484 SETD5Q9C0A6 1442 aa31.27■■■□□ 2.6
TPM1-208ENST00000404484 SYCP2Q9BX26 1530 aa31.26■■■□□ 2.6
TPM1-208ENST00000404484 PLEKHH2Q8IVE3 1493 aa31.26■■■□□ 2.59
TPM1-208ENST00000404484 DNMT1P26358 1616 aaKnown RBP31.26■■■□□ 2.59
TPM1-208ENST00000404484 PTPRKQ15262 1439 aa31.23■■■□□ 2.59
TPM1-208ENST00000404484 MLH3Q9UHC1 1453 aa31.23■■■□□ 2.59
TPM1-208ENST00000404484 DAPK1P53355 1430 aa31.22■■■□□ 2.59
TPM1-208ENST00000404484 ATP10AO60312 1499 aa31.22■■■□□ 2.59
TPM1-208ENST00000404484 HFM1A2PYH4 1435 aa31.2■■■□□ 2.58
TPM1-208ENST00000404484 RAB3GAP2Q9H2M9 1393 aa31.19■■■□□ 2.58
TPM1-208ENST00000404484 MBD5Q9P267 1494 aa31.18■■■□□ 2.58
TPM1-208ENST00000404484 HECW2Q9P2P5 1572 aa31.18■■■□□ 2.58
TPM1-208ENST00000404484 SPAG9O60271 1321 aaKnown RBP31.17■■■□□ 2.58
TPM1-208ENST00000404484 ABCC5O15440 1437 aa31.17■■■□□ 2.58
TPM1-208ENST00000404484 C9orf84Q5VXU9 1444 aa31.15■■■□□ 2.58
TPM1-208ENST00000404484 ROCK1Q13464 1354 aa31.14■■■□□ 2.58
TPM1-208ENST00000404484 SIGLEC1Q9BZZ2 1709 aa31.13■■■□□ 2.57
TPM1-208ENST00000404484 KIDINS220Q9ULH0 1771 aa31.11■■■□□ 2.57
TPM1-208ENST00000404484 ARHGEF5Q12774 1597 aa31.11■■■□□ 2.57
TPM1-208ENST00000404484 DIP2CQ9Y2E4 1556 aa31.11■■■□□ 2.57
TPM1-208ENST00000404484 CROCC2H7BZ55 1655 aa31.11■■■□□ 2.57
TPM1-208ENST00000404484 NAIPQ13075 1403 aa31.09■■■□□ 2.57
TPM1-208ENST00000404484 MLECQ14165 292 aa31.09■■■□□ 2.57
TPM1-208ENST00000404484 GCC2Q8IWJ2 1684 aa31.09■■■□□ 2.57
TPM1-208ENST00000404484 RSPH4AQ5TD94 716 aa31.09■■■□□ 2.57
TPM1-208ENST00000404484 ABCA6Q8N139 1617 aa31.09■■■□□ 2.57
TPM1-208ENST00000404484 BCORL1Q5H9F3 1711 aa31.08■■■□□ 2.57
TPM1-208ENST00000404484 SHANK2Q9UPX8 1470 aa31.08■■■□□ 2.57
TPM1-208ENST00000404484 ADAMTSL3P82987 1691 aa31.07■■■□□ 2.56
TPM1-208ENST00000404484 ADGBQ8N7X0 1667 aa31.05■■■□□ 2.56
TPM1-208ENST00000404484 CHIC2Q9UKJ5 165 aa31.05■■■□□ 2.56
TPM1-208ENST00000404484 CLSPNQ9HAW4 1339 aa31.04■■■□□ 2.56
TPM1-208ENST00000404484 DHX57Q6P158 1386 aaKnown RBP31.04■■■□□ 2.56
TPM1-208ENST00000404484 ATP7AQ04656 1500 aa31.03■■■□□ 2.56
TPM1-208ENST00000404484 ADGRL2O95490 1459 aa31.02■■■□□ 2.56
TPM1-208ENST00000404484 CCDC141Q6ZP82 1450 aa31.02■■■□□ 2.56
TPM1-208ENST00000404484 ACIN1Q9UKV3 1341 aaKnown RBP31.01■■■□□ 2.55
TPM1-208ENST00000404484 REREQ9P2R6 1566 aa31■■■□□ 2.55
TPM1-208ENST00000404484 INO80Q9ULG1 1556 aaPredicted RBP31■■■□□ 2.55
TPM1-208ENST00000404484 RTEL1-TNFRSF6BF6WH68 1400 aa30.99■■■□□ 2.55
TPM1-208ENST00000404484 TSPY4P0CV99 314 aa30.98■■■□□ 2.55
TPM1-208ENST00000404484 TSPY10P0CW01 314 aa30.98■■■□□ 2.55
TPM1-208ENST00000404484 RRP7BPQ9NSQ0 103 aa30.98■■■□□ 2.55
TPM1-208ENST00000404484 MADDQ8WXG6 1647 aa30.96■■■□□ 2.55
TPM1-208ENST00000404484 ANKRD30AQ9BXX3 1397 aa30.96■■■□□ 2.55
TPM1-208ENST00000404484 PTPRMP28827 1452 aa30.96■■■□□ 2.55
TPM1-208ENST00000404484 NCOA1Q15788 1441 aa30.94■■■□□ 2.54
TPM1-208ENST00000404484 AGLP35573 1532 aa30.94■■■□□ 2.54
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms